View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2744_low_10 (Length: 260)

Name: NF2744_low_10
Description: NF2744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2744_low_10
NF2744_low_10
[»] chr8 (17 HSPs)
chr8 (1-236)||(4736851-4737082)
chr8 (21-236)||(4726295-4726508)
chr8 (1-236)||(4689127-4689356)
chr8 (38-236)||(4681496-4681681)
chr8 (136-238)||(4776432-4776535)
chr8 (171-236)||(4889866-4889931)
chr8 (168-229)||(4703790-4703851)
chr8 (135-238)||(4913365-4913469)
chr8 (141-238)||(21439303-21439401)
chr8 (163-236)||(4924888-4924961)
chr8 (144-236)||(10446871-10446964)
chr8 (141-236)||(4745857-4745953)
chr8 (168-236)||(4996433-4996501)
chr8 (136-223)||(10452532-10452620)
chr8 (169-236)||(4715148-4715215)
chr8 (173-238)||(4904415-4904480)
chr8 (1-97)||(38513520-38513616)
[»] chr1 (2 HSPs)
chr1 (41-100)||(37000724-37000783)
chr1 (38-84)||(39235980-39236026)
[»] chr7 (1 HSPs)
chr7 (41-85)||(3478857-3478901)
[»] chr3 (2 HSPs)
chr3 (64-102)||(34265659-34265697)
chr3 (39-100)||(21777980-21778041)
[»] chr2 (1 HSPs)
chr2 (38-91)||(10954621-10954674)
[»] chr5 (1 HSPs)
chr5 (34-102)||(39971084-39971152)
[»] chr4 (2 HSPs)
chr4 (39-99)||(6381057-6381117)
chr4 (64-100)||(21942999-21943035)


Alignment Details
Target: chr8 (Bit Score: 158; Significance: 4e-84; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 4737082 - 4736851
Alignment:
Q  1 tagtttatgttttcatcatcgtattctttagaaattacagaaaaagatataagataattaggtgtatgttagtaaagaaataattcatgcaattgaaaat 100  Q
    ||||||||||||||||||| || ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  4737082 tagtttatgttttcatcatagttttctttacaaattacagaaaaatatataagataattaggtgtatgttagtaaagaaataattcatgcaattataaat 4736983  T
Q  101 ataccaagaggatactatatttaaggacggaagaggaggtagtatgtttttcaattaaacaaagggttagcttaccatcatcctgttgagtttctgattg 200  Q
    ||| |||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||      
T  4736982 ata-caagaggatactatatttaaggacg---gaggaggtagtatgtttttcaattaaacaaagggctagcttaccatcatcttgttgagtttctgatat 4736887  T
Q  201 tgagaagtcttttactttataaacctcaaaggcatt 236  Q
    |||||||||| ||  ||||||||||||||| |||||    
T  4736886 tgagaagtctctttgtttataaacctcaaaagcatt 4736851  T

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Target: chr8; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 21 - 236
Target Start/End: Complemental strand, 4726508 - 4726295
Alignment:
Q  21 gtattctttagaaattacagaaaaagatataagataattaggtgtatgttagtaaagaaataattcatgcaattgaaaatataccaa-gaggatactata 119  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||| ||||||||||| ||| ||||||||||||    
T  4726508 gtattctttacaaattacagaaaaaaatataagataattaggtgtatgttagtaaaggtataattcatgcagttgaaaatatatcaaagaggatactata 4726409  T
Q  120 tttaaggacggaagaggaggtagtatgtttttcaattaaacaaagggttagcttaccatcatcctgttgagtttctgattgtgagaagtcttttacttta 219  Q
    |||||||||| |   |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| || ||||||||||||| ||||    
T  4726408 tttaaggacgaa---ggaggtagtatgtttttcaattaaacaaagggctagcttaccatcaccctgttgagtttctgaatgcgagaagtcttttagttta 4726312  T
Q  220 taaacctcaaaggcatt 236  Q
    || ||||||||||||||    
T  4726311 tatacctcaaaggcatt 4726295  T

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Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 4689356 - 4689127
Alignment:
Q  1 tagtttatgttttcatcatcgtattctttagaaattacagaaaaagatataagataattaggtgtatgttagtaaaga--aataattcatgcaattgaaa 98  Q
    |||||||||||||||||||  ||||| ||  | ||  ||||||||| | ||||||||||||    ||||||||||| |  ||||||| ||||| ||||||    
T  4689356 tagtttatgttttcatcataatattcattgcagatagcagaaaaagttctaagataattag----atgttagtaaaaaataataattaatgcagttgaaa 4689261  T
Q  99 atataccaagaggatactatatttaaggacggaagaggaggtagtatgtttttcaattaaac-aaagggttagcttaccatcatcctgttgagtttctga 197  Q
    ||| | ||||||||| | ||||||| ||     |||| |||||||||||||||||| ||||| |||||| | ||||||||||||| |||| |||||||||    
T  4689260 atagatcaagaggattcaatatttatgg-----agagaaggtagtatgtttttcaaataaactaaagggattgcttaccatcatcttgttcagtttctga 4689166  T
Q  198 ttgtgagaagtcttttactttataaacctcaaaggcatt 236  Q
    ||||| ||||||  ||||||||||||||||| |||||||    
T  4689165 ttgtgggaagtccattactttataaacctcataggcatt 4689127  T

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Target: chr8; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 38 - 236
Target Start/End: Complemental strand, 4681681 - 4681496
Alignment:
Q  38 cagaaaaagatataagataattaggtgtatgttagtaaagaaataattcatgcaattgaaaatataccaagaggatactatatttaaggacggaagagga 137  Q
    ||||||||||| ||||||||||| | ||||||| |||||||||||||| ||||| ||||||| ||| ||||||||| || ||||||           |||    
T  4681681 cagaaaaagatgtaagataattaagggtatgttggtaaagaaataattaatgcagttgaaaacatatcaagaggatcctctattta-----------gga 4681593  T
Q  138 ggtagtatgtttttcaattaaacaaagggttagcttaccatcatcctgttgagtttctgattgtgagaagtcttttactttataaacctcaaaggcatt 236  Q
    ||||||||| |||| || || || || |  | ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||    
T  4681592 ggtagtatgcttttaaactacactaaag--tcgcttaccatcatcctgttgagtttctgattgtgagaaattttttactttataaacctcaacggcatt 4681496  T

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Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 136 - 238
Target Start/End: Original strand, 4776432 - 4776535
Alignment:
Q  136 gaggtagtatgtttttcaattaaac-aaagggttagcttaccatcatcctgttgagtttctgattgtgagaagtcttttactttataaacctcaaaggca 234  Q
    ||||||||||||||||||| ||||| ||||   |||||||||||||||||||||||||||| ||||||||||||||||| |  |||||| ||||||||||    
T  4776432 gaggtagtatgtttttcaaataaactaaagtcctagcttaccatcatcctgttgagtttctaattgtgagaagtcttttgccatataaatctcaaaggca 4776531  T
Q  235 ttta 238  Q
    ||||    
T  4776532 ttta 4776535  T

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Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 171 - 236
Target Start/End: Original strand, 4889866 - 4889931
Alignment:
Q  171 cttaccatcatcctgttgagtttctgattgtgagaagtcttttactttataaacctcaaaggcatt 236  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4889866 cttaccatcatcctgatgagtttctgattgtgagaagtcttttactttataaatctcaaaggcatt 4889931  T

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Target: chr8; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 4703851 - 4703790
Alignment:
Q  168 tagcttaccatcatcctgttgagtttctgattgtgagaagtcttttactttataaacctcaa 229  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  4703851 tagcttaccatcatcctgatgagtttctgactgtgagaagtcttttactttataaacctcaa 4703790  T

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Target: chr8; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 135 - 238
Target Start/End: Original strand, 4913365 - 4913469
Alignment:
Q  135 ggaggtagtatgtttttcaattaaac-aaagggttagcttaccatcatcctgttgagtttctgattgtgagaagtcttttactttataaacctcaaaggc 233  Q
    |||||||| ||||||||||  ||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||    | |||| |||||||||    
T  4913365 ggaggtagaatgtttttcagataaactaaagggccagcttaccatcatcctgttgagtttctgattgtgagaagtcttttgacatgtaaatctcaaaggc 4913464  T
Q  234 attta 238  Q
    |||||    
T  4913465 attta 4913469  T

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Target: chr8; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 141 - 238
Target Start/End: Original strand, 21439303 - 21439401
Alignment:
Q  141 agtatgtttttcaattaaac-aaagggttagcttaccatcatcctgttgagtttctgattgtgagaagtcttttactttataaacctcaaaggcattta 238  Q
    |||||||||||||| ||||| |||| |  ||||||||||||||||||||||||||||||||||||||| ||||| |  |||||| |||||| |||||||    
T  21439303 agtatgtttttcaaataaactaaagagccagcttaccatcatcctgttgagtttctgattgtgagaagacttttcccatataaatctcaaatgcattta 21439401  T

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Target: chr8; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 163 - 236
Target Start/End: Original strand, 4924888 - 4924961
Alignment:
Q  163 agggttagcttaccatcatcctgttgagtttctgattgtgagaagtcttttactttataaacctcaaaggcatt 236  Q
    |||| ||||||||||||||| ||||||||||||| |||| |||| | ||||||||||||||||||| |||||||    
T  4924888 agggctagcttaccatcatcttgttgagtttctggttgtaagaattgttttactttataaacctcataggcatt 4924961  T

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Target: chr8; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 144 - 236
Target Start/End: Complemental strand, 10446964 - 10446871
Alignment:
Q  144 atgtttttcaattaaac-aaagggttagcttaccatcatcctgttgagtttctgattgtgagaagtcttttactttataaacctcaaaggcatt 236  Q
    ||||||||||| ||||| |||||| | ||||||||||||| |||| ||||||||  |||||||||||||||||||||||||  |||| ||||||    
T  10446964 atgtttttcaaataaactaaagggcttgcttaccatcatcttgtttagtttctggctgtgagaagtcttttactttataaatttcaatggcatt 10446871  T

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Target: chr8; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 141 - 236
Target Start/End: Complemental strand, 4745953 - 4745857
Alignment:
Q  141 agtatgtttttcaattaaacaaa-gggttagcttaccatcatcctgttgagtttctgattgtgagaagtcttttactttataaacctcaaaggcatt 236  Q
    |||||||||||||| ||||| || ||| ||||||| ||||||| |||||||||||||||| |||||||||| |||  | |||||||||| |||||||    
T  4745953 agtatgtttttcaaataaactaatgggctagcttatcatcatcttgttgagtttctgattttgagaagtctcttagctaataaacctcataggcatt 4745857  T

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Target: chr8; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 4996501 - 4996433
Alignment:
Q  168 tagcttaccatcatcctgttgagtttctgattgtgagaagtcttttactttataaacctcaaaggcatt 236  Q
    |||||||||||||||| | | |||||||||||||||||||| ||||||||||||||  |||||||||||    
T  4996501 tagcttaccatcatcccgatcagtttctgattgtgagaagttttttactttataaatttcaaaggcatt 4996433  T

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Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 223
Target Start/End: Complemental strand, 10452620 - 10452532
Alignment:
Q  136 gaggtagtatgtttttcaattaaac-aaagggttagcttaccatcatcctgttgagtttctgattgtgagaagtcttttactttataaa 223  Q
    |||||| |||||||||||| ||||| |||||| |  |||||||||||| ||||  ||||||| || |||||||||||||||||||||||    
T  10452620 gaggtaatatgtttttcaaataaactaaagggcttacttaccatcatcttgttctgtttctggttttgagaagtcttttactttataaa 10452532  T

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Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 236
Target Start/End: Complemental strand, 4715215 - 4715148
Alignment:
Q  169 agcttaccatcatcctgttgagtttctgattgtgagaagtcttttactttataaacctcaaaggcatt 236  Q
    ||||||||||||||||| ||||||||  |||| |||||   ||||||||||||||||||| |||||||    
T  4715215 agcttaccatcatcctgatgagtttccaattgcgagaaaagttttactttataaacctcataggcatt 4715148  T

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Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 238
Target Start/End: Original strand, 4904415 - 4904480
Alignment:
Q  173 taccatcatcctgttgagtttctgattgtgagaagtcttttactttataaacctcaaaggcattta 238  Q
    |||||||||| || | |||||||||||||  |||||||||| | || |||| ||||||||||||||    
T  4904415 taccatcatcttgatcagtttctgattgtatgaagtcttttgccttgtaaatctcaaaggcattta 4904480  T

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Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 38513520 - 38513616
Alignment:
Q  1 tagtttatgttttcatcatcgtattctttagaaattacagaaaaagatataagataattaggtgtatgttagtaaagaaataattcatgcaattgaa 97  Q
    ||||| ||||||||||||  |||||  | ||| ||| ||||||||||| ||| || |||  | ||||||| |||||||||||||| ||||| |||||    
T  38513520 tagttaatgttttcatcaaggtatttatcagagattgcagaaaaagatgtaacattatttagagtatgttggtaaagaaataattaatgcagttgaa 38513616  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 100
Target Start/End: Complemental strand, 37000783 - 37000724
Alignment:
Q  41 aaaaagatataagataattaggtgtatgttagtaaagaaataattcatgcaattgaaaat 100  Q
    |||||||| ||| ||||||||| ||||||| |||||||||||||| ||||| ||||||||    
T  37000783 aaaaagatgtaaaataattaggggtatgtttgtaaagaaataattaatgcacttgaaaat 37000724  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 84
Target Start/End: Original strand, 39235980 - 39236026
Alignment:
Q  38 cagaaaaagatataagataattaggtgtatgttagtaaagaaataat 84  Q
    ||||||||||| ||| ||||||||| ||||||| |||||||||||||    
T  39235980 cagaaaaagatgtaatataattaggagtatgttggtaaagaaataat 39236026  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 3478857 - 3478901
Alignment:
Q  41 aaaaagatataagataattaggtgtatgttagtaaagaaataatt 85  Q
    |||||||||||| |||| |||| ||||||||||||||||||||||    
T  3478857 aaaaagatataaaataaataggggtatgttagtaaagaaataatt 3478901  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 102
Target Start/End: Original strand, 34265659 - 34265697
Alignment:
Q  64 gtatgttagtaaagaaataattcatgcaattgaaaatat 102  Q
    |||||||||||||||||||||| ||| ||||||||||||    
T  34265659 gtatgttagtaaagaaataattaatgtaattgaaaatat 34265697  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 21777980 - 21778041
Alignment:
Q  39 agaaaaagatataagataattaggtgtatgttagtaaagaaataattcatgcaattgaaaat 100  Q
    ||||||||||  || ||||||||  |||||||||||||||||||||| ||| | ||||||||    
T  21777980 agaaaaagatgcaacataattagaggtatgttagtaaagaaataattaatgaagttgaaaat 21778041  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 91
Target Start/End: Original strand, 10954621 - 10954674
Alignment:
Q  38 cagaaaaagatataagataattaggtgtatgttagtaaagaaataattcatgca 91  Q
    ||||||||||| |||  |||||||| ||||||| |||||||||||||| |||||    
T  10954621 cagaaaaagatgtaatttaattaggcgtatgttggtaaagaaataattaatgca 10954674  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 39971152 - 39971084
Alignment:
Q  34 attacagaaaaagatataagataattaggtgtatgttagtaaagaaataattcatgcaattgaaaatat 102  Q
    |||| ||||||||||  || ||||||| | ||||||| |||||||||||||| ||| | ||||||||||    
T  39971152 attaaagaaaaagatgcaaaataattaagggtatgttggtaaagaaataattaatgtacttgaaaatat 39971084  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 6381117 - 6381057
Alignment:
Q  39 agaaaaagatataagataattaggtgtatgttagtaaagaaataattcatgcaattgaaaa 99  Q
    |||||||||| ||| |||| || | ||||||||||||||||||| || |||||||| ||||    
T  6381117 agaaaaagatgtaaaataaatacgagtatgttagtaaagaaatagtttatgcaattaaaaa 6381057  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 21943035 - 21942999
Alignment:
Q  64 gtatgttagtaaagaaataattcatgcaattgaaaat 100  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  21943035 gtatgttagtaaagaaataattaatgcacttgaaaat 21942999  T

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