View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2744_low_2 (Length: 658)
Name: NF2744_low_2
Description: NF2744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2744_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 605; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 18 - 638
Target Start/End: Original strand, 25934018 - 25934638
Alignment:
| Q |
18 |
gaatcctaaggtcaagatgcaggagaaagaagaagaagaggttgtggtgcttaagagaagtagtagcagttgtgttgatataaaaagacatggtttttgg |
117 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25934018 |
gaattctaaggtcaagatgcaggagaaagaagaagaagaggttgtggtgcttaagagaagtagtagcagttgtgttgatataaaaagacatggtttttgg |
25934117 |
T |
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| Q |
118 |
agaattgggaagctatttaggaagaataagaagaacaaggattgtggaagaagtgttggtgggtttgatgagaagaatgagatgtgggtggttgatcatc |
217 |
Q |
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| T |
25934118 |
agaattgggaagctatttaggaagaataagaagaacaaggattgtggtagaagtgttggtgggtttgatgagaagaatgagatgtgggtggttgatcatc |
25934217 |
T |
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| Q |
218 |
atggaggtgtgtcaagatcaagatctctgtgcagtttcaggggtggagctatatttggatctgaagatggtggtgattcagttttatcaggtgctagaag |
317 |
Q |
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| T |
25934218 |
atggaggtgtgtcaagatcaagatctctgtgcagtttcaggggtggagctatatttggatctgaagatggtggtgattcagttttatcaggtgctagaag |
25934317 |
T |
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| Q |
318 |
ctctatttctgcagctagaagttcaggtgtgaatggtggtttgatgctagaatctggtaggagaagtggttacagtgaagctgaaccaagaagaagtgat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25934318 |
ctctatttctgcagctagaagttcaggtgtgaatggtggtttgatgttagaatcaggtaggagaagtggttacagtgaagctgaaccaagaagaagtgat |
25934417 |
T |
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| Q |
418 |
ttcttctatgaatatgaaaatggtagaaagagtggtgtaatggaaattgatggaagcagctacaataggcgtgtgttttcactaagagagagtgatttta |
517 |
Q |
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| T |
25934418 |
ttcttctatgaatatgaaaatggtagaaagagtggtgtaatggaaattgatggaagcagctacaataggcgtgtgttttcactaagagagagtgatttta |
25934517 |
T |
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| Q |
518 |
aaggcatggatgagtctagttttattgatttaaagcttgattattcatctgaattaaaaatggcagatacactctcagcttttggaagcataagaggtgg |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25934518 |
aaggcatggatgagtctagttttattgatttaaagcttgattattcatctgaattaaaaatggcagatacactctcagcttttggaagcataagaggtgg |
25934617 |
T |
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| Q |
618 |
aaatttcatgacacatgatgc |
638 |
Q |
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| T |
25934618 |
aaatttcatgacacatgatgc |
25934638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 372 - 566
Target Start/End: Complemental strand, 16704111 - 16703920
Alignment:
| Q |
372 |
tggtaggagaagtggttacagtgaagctgaaccaagaagaagtgatttcttctatgaatatgaaaatggtagaaagagtggtgtaatggaaattgatgga |
471 |
Q |
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| T |
16704111 |
tggtaggagaagtggttatagtgaagctgaaccaagaagaagtgatttcttctatgaatatgaaaatggtaggaagagtggtgttatggaaattgatgga |
16704012 |
T |
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| Q |
472 |
agcagctacaataggcgtgtgttttcactaagagagagtgattttaaaggcatggatgagtctagttttattgatttaaagcttgattattcatc |
566 |
Q |
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| T |
16704011 |
---agctacaacaggcgtctgttttcactaagagagagtgattttaaaggcatggatgaatctcgttttattgatttgaagcttgattattcatc |
16703920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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