View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2744_low_3 (Length: 504)
Name: NF2744_low_3
Description: NF2744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2744_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 401; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 11 - 489
Target Start/End: Complemental strand, 29145140 - 29144657
Alignment:
| Q |
11 |
cacagaacaaaaagggaagtgaagtgcatgggaaagagtaccata---cttaggtagattaatgaaataatttgcaaataaaatatagaattgaaaatga |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
29145140 |
cacagaacaaaaagggaagtgaagtgcatgggaaagagtactatatatactaggtagattaatgaaacaatttgcaaataaaatatagaattgaaaatga |
29145041 |
T |
|
| Q |
108 |
aatacctttcaaaatagagtgcaaaaggagcaacacaaatagcagcaacaatgtgtcgataagcaatgagtgcaaaaatgtaagtcccttgaaccaaaat |
207 |
Q |
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| T |
29145040 |
attacctttcaaaatagagtgcaaaaggagcaacacaaatagcagcaacaatatgtcgataagcaatgagtgcaaaaatgtaagtcccttgaaccaaaat |
29144941 |
T |
|
| Q |
208 |
gactcttgatagaagttgcatcccagttgcaaatatttgcactaataacatactaagaagtgcttgtgatgatttgaaccattccttcatactttcaatt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29144940 |
gactcttgatagaagttgcatcccagttgcaaatatttgcactaataacatactaagaagtgcttgtgatgatttgaaccattccttcatactttcaatt |
29144841 |
T |
|
| Q |
308 |
ctctctgtgtttcccatgtttcttaacctatctttgtgatctc-taaggnnnnnnntggaaaattattgttatgagaagagtgacaaaaactatatgtgc |
406 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29144840 |
ctctctgtgtttcccatgtttcttaacttatctttgtgatctcttaaggaaaaaaatggaaaattattgttatgagaagagtgacaaaaactatatgtgc |
29144741 |
T |
|
| Q |
407 |
tgtgctcaactcaactcaagaaattaagaggtc-aatataagatcgaggccataattatttggcttggtatttgaatagttttg |
489 |
Q |
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| T |
29144740 |
tgtgctcagctcaactcaagaaattaagaggtcaaatataagatcgaggccataattatttggcttggtatttgaatagttttg |
29144657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 11 - 332
Target Start/End: Original strand, 29226833 - 29227157
Alignment:
| Q |
11 |
cacagaacaaaaagggaagtgaagtgcatgggaaagagtaccata---cttaggtagattaatgaaataatttgcaaataaaatatagaattgaaaatga |
107 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
29226833 |
cacagaacaaaaagggaagtaaagtgcatgggaaagagtactatatatactaggtagattaatgcaacaatttgcaaataaaatatagaattgaaaatga |
29226932 |
T |
|
| Q |
108 |
aatacctttcaaaatagagtgcaaaaggagcaacacaaatagcagcaacaatgtgtcgataagcaatgagtgcaaaaatgtaagtcccttgaaccaaaat |
207 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29226933 |
attacctttcaaaatagagtgcaaaaggagcaacacaaatagcagcaacaatatgtcgataagcaatgagtgcaaaaatgtaagtcccttgaaccaaaat |
29227032 |
T |
|
| Q |
208 |
gactcttgatagaagttgcatcccagttgcaaatatttgcactaataacatactaagaagtgcttgtgatgatttgaaccattccttcatactttcaatt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29227033 |
gactcttgatagaagttgcatcccagttgcaaatatttgcactaataacatactaagaagtgcttgtgatgatttgaaccattccttcatactttcaatt |
29227132 |
T |
|
| Q |
308 |
ctctctgtgtttcccatgtttctta |
332 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
29227133 |
ctctctgtgtttcccatgtttctta |
29227157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 158
Target Start/End: Original strand, 38852433 - 38852486
Alignment:
| Q |
105 |
tgaaatacctttcaaaatagagtgcaaaaggagcaacacaaatagcagcaacaa |
158 |
Q |
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|||| |||||||||||||| | ||| ||||| |||||||||| ||||||||||| |
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| T |
38852433 |
tgaattacctttcaaaatatattgctaaaggtgcaacacaaacagcagcaacaa |
38852486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 5e-54; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 111 - 318
Target Start/End: Original strand, 5306809 - 5307016
Alignment:
| Q |
111 |
acctttcaaaatagagtgcaaaaggagcaacacaaatagcagcaacaatgtgtcgataagcaatgagtgcaaaaatgtaagtcccttgaaccaaaatgac |
210 |
Q |
| |
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||||||||||||| |||||||| || || ||||||| |||||||||||| |||||||| ||| |||||||||||||| |||| || |||||||| ||||| |
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| T |
5306809 |
acctttcaaaataaagtgcaaagggggcgacacaaacagcagcaacaatttgtcgatatgcattgagtgcaaaaatgaaagtgccctgaaccaagatgac |
5306908 |
T |
|
| Q |
211 |
tcttgatagaagttgcatcccagttgcaaatatttgcactaataacatactaagaagtgcttgtgatgatttgaaccattccttcatactttcaattctc |
310 |
Q |
| |
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||||||| |||||| ||||||||| |||||||||||||||||||||| |||||||| ||||| || || |||||||||| |||||||||| | ||||| |
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| T |
5306909 |
ccttgataaaagttgtatcccagttccaaatatttgcactaataacatgctaagaagagcttgggaagagatgaaccattctttcatactttgagttctc |
5307008 |
T |
|
| Q |
311 |
tctgtgtt |
318 |
Q |
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|||||||| |
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|
| T |
5307009 |
tctgtgtt |
5307016 |
T |
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