View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2744_low_4 (Length: 438)
Name: NF2744_low_4
Description: NF2744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2744_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-128; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 51357745 - 51358045
Alignment:
| Q |
1 |
aatacataacgatttgcatcataatctagtgatggtgatacagacggactcacacgacacttgaagtttcaccatattgaagttannnnnnnnnggataa |
100 |
Q |
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| T |
51357745 |
aatacataacgatttgcatcataatctagtgatggtgatacagagggactcacacgacacttgaagtttcaccatattgaagttttttttttttggataa |
51357844 |
T |
|
| Q |
101 |
ccttaaaatgcacactatgaattctaatatctctacttcccgtcatagacttgtatacatgaatattataactcatatatttgnnnnnnnattaattatt |
200 |
Q |
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| T |
51357845 |
ccttaaaatgcacactatgaattctaatatctctacttcccgtcatagacttgtatacatgaatattataactcatatatttgtttttttattaattatt |
51357944 |
T |
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| Q |
201 |
gtaagattaaataactctccactccctttaaagataatgatatgacaactctttcccttcatgttttaaaacacagacaatcctccttttaaagatgctg |
300 |
Q |
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| T |
51357945 |
gtaagattaaataactctccactccctttaaagataatgatattgcaactcttttccttcatgttttaaaacacagacaatcctccttttaaagatgctg |
51358044 |
T |
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| Q |
301 |
a |
301 |
Q |
| |
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| |
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| T |
51358045 |
a |
51358045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 358 - 418
Target Start/End: Original strand, 51358137 - 51358197
Alignment:
| Q |
358 |
ccaaaatgacatttattgtccaattcatctatcggnnnnnnnggccatcaaaggagtagta |
418 |
Q |
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| T |
51358137 |
ccaaaatgacatttattgtccaattcatctatcggtttttttggccatcaaaggagtagta |
51358197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 34656907 - 34656972
Alignment:
| Q |
17 |
catcataatctagtgatggtgatacagacggactcacacgacact-tgaagtttcaccatattgaa |
81 |
Q |
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||||| || ||||||||||||||| ||| |||||||| ||| | | |||||||||||||||||||| |
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| T |
34656907 |
catcagaaactagtgatggtgatagagagggactcacccgatattgtgaagtttcaccatattgaa |
34656972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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