View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2744_low_6 (Length: 338)
Name: NF2744_low_6
Description: NF2744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2744_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 20 - 304
Target Start/End: Original strand, 7300063 - 7300347
Alignment:
| Q |
20 |
acatggatgttaaatagaagcaaattggttccattacatcccaagtaagctcccaaaaggtgagtctcattaatactgctgttttcaccataacgaaacc |
119 |
Q |
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| T |
7300063 |
acatggatgttaaatagaagcaaatgggttccattacatcccaagtaagctcccaaaaggtgagtctcattaatactgctgttttcaccataatgaaacc |
7300162 |
T |
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| Q |
120 |
caaacctccccaaagttcacgatcaaccaaggcttcggcttcttcatctatggccaacttctttttctccatttcttcatattcttttcttactgaatct |
219 |
Q |
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| T |
7300163 |
caaacctccccaaagttcacgatcaaccaaggcttcggcttcttcatctatggccaacttctttttctccatttcttcatattcttttcttactgaatct |
7300262 |
T |
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| Q |
220 |
gacacctttattcccggtgtaggaagcagactttggagtgttttggctacctgtatcacaaaattttacagagtttgggtaaatc |
304 |
Q |
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| T |
7300263 |
gacacctttattcccggtgtaggaagcagactttggagtgttttggctacctgtatcacaaaattttacagagtttgggtaaatc |
7300347 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 89
Target Start/End: Original strand, 6698566 - 6698610
Alignment:
| Q |
45 |
tggttccattacatcccaagtaagctcccaaaaggtgagtctcat |
89 |
Q |
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| T |
6698566 |
tggttccataacatcccaacttagctcccaaaatgtgagtctcat |
6698610 |
T |
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