View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2744_low_7 (Length: 314)
Name: NF2744_low_7
Description: NF2744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2744_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 53478814 - 53478517
Alignment:
| Q |
1 |
aatgaagggccctcccccatttccatcagacactaaattaagtccatgatggtgcccttcatgatgcaccaaatttggaagatccttagcctcttcttca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53478814 |
aatgaagggccctcccccatttccatcagacactaaattaagtccatgatggtgcccttcatgatgcaccaaatttggaagatccttagcctcttcttca |
53478715 |
T |
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| Q |
101 |
agttgtttctctagctgctccacttttgaagcagtgaaagggtaagcattttcttggtacaaatttattaagtttcttccatgtattgttattgttttac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53478714 |
agttgtttctctagctgctccacttttgaagcagtgaaagggtaagcattttcttggtacaaatttattaagtttcttccatgtattgttattgttttac |
53478615 |
T |
|
| Q |
201 |
catcaggacctataattaccaaacaaggtatcccttgtacatcaaagtgtcttgcaaggttctttatctctgggtcaccaaaaggtagtgctaaccaa |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53478614 |
catcaggacctataattaccaaacaaggtatcccttgtacatcaaagtgtcttgcaaggttctttatctctgggtcaccaaaaggtagtgctaaccaa |
53478517 |
T |
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