View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2744_low_9 (Length: 260)
Name: NF2744_low_9
Description: NF2744
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2744_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 17 - 243
Target Start/End: Complemental strand, 10606609 - 10606383
Alignment:
| Q |
17 |
agatgaaacaatgatctacagtttatgatgactctgtgaggctttattgtggaagaacagctgctgagtatgttttacagaaatgaaagaaactaagggt |
116 |
Q |
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| T |
10606609 |
agatgaaacaatgatctacagtttatgatgactctgtgaggctttattgtagaagaacagttgctgagtatgttttatagaaatgaaagaaactaagggt |
10606510 |
T |
|
| Q |
117 |
gctaacgtgaaaaaacagaagcatagaccagcttgggtgtagaagcaagtcattaaaataagataattaattttattannnnnnnaagcttgacctgttt |
216 |
Q |
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||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
10606509 |
gctaacgtgaaaaaacagaagcatagaccggcttaggtgtagaagcaagtcattaaaataagataattaattttattatttttttaagcttgacctgttt |
10606410 |
T |
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| Q |
217 |
taactgccatctgtctagtaaaatgag |
243 |
Q |
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||| |||||||| |||||||||||||| |
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| T |
10606409 |
taattgccatctctctagtaaaatgag |
10606383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 42638424 - 42638201
Alignment:
| Q |
17 |
agatgaaacaatgatctacagtttatgatgactctgtgaggctttattgtggaagaaca-gctgctgagtatgttttacagaaatgaaagaaactaaggg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
42638424 |
agatgaaacaatgatctacagtttatgatgactctgtgaggctttattgtgggagaacatgctgctgagtatgttttacataaatgaaagaaactaaggg |
42638325 |
T |
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| Q |
116 |
tgctaacgtgaaaaaacagaagcatagaccagcttgggtgtagaagcaagtcattaaaataagataattaattttattannnnnnnaagcttgacctgtt |
215 |
Q |
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| T |
42638324 |
tcctaacgtgaaaaaacagaagcatagaccagcttgggtgtagaagcaagtcattaaaataagataattaattttattatttttttaagcttgacctgtt |
42638225 |
T |
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| Q |
216 |
ttaactgccatctgtctagtaaaa |
239 |
Q |
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||||| ||||||| |||| ||||| |
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| T |
42638224 |
ttaacggccatctatctaataaaa |
42638201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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