View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2745_high_3 (Length: 533)
Name: NF2745_high_3
Description: NF2745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2745_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 236 - 521
Target Start/End: Original strand, 8265701 - 8266001
Alignment:
| Q |
236 |
gggggtgatgtttatcaacatgttttcctttcaaattgaccttcatgtcagttttatcttcttttgtccctctctccataatctcatcccatataatgtc |
335 |
Q |
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| T |
8265701 |
gggggtaatgtttatcaacatgttttcctttcaaattgaccttcatgtcagttttatcttcttttgtccctctctccataatctcctcccatatcatgtc |
8265800 |
T |
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| Q |
336 |
acatatctaggaaatatggtcttttatcttgataaactccatgatatagttccttgggaaattagtaaacaataaacatcaacataaatcct-------- |
427 |
Q |
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| T |
8265801 |
acaaatctaggaaatatggtcttttatcttgataaacaccatgatatagttccttgggaaattagtaaacaataaacatcaacataaatcctccacccaa |
8265900 |
T |
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| Q |
428 |
--------caaagtgtttttatattgttgttaatttaaaatgcannnnnnnatcatgcataacaaaatttgagaaaattacaaatttaaagaaattgtat |
519 |
Q |
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| T |
8265901 |
cacataccctaagtgtttttatattgttgttaatttaaaatgca-ttttttatcatgcataacaaaatttgagaaaattataaatttaaagaaattgtat |
8265999 |
T |
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| Q |
520 |
gt |
521 |
Q |
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| T |
8266000 |
gt |
8266001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 2 - 192
Target Start/End: Original strand, 8264361 - 8264535
Alignment:
| Q |
2 |
taagttgttaacttcatatcaccccaccatgtcctccacaaccctataagaatgtgccttcaaacatgttatggacnnnnnnnnnnnnnnnnnnnngagg |
101 |
Q |
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| T |
8264361 |
taagttgttaacttcatatcaccccaccatgtcctccacaaccctataagaatgtgccttcaaacatgttatggac----ttttttttttttttttgagg |
8264456 |
T |
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| Q |
102 |
aaacatgttatggactttgtatactatattttacccgtatgatagtgttgaggggaaaattataatgttacaatttgattgtccatcggtt |
192 |
Q |
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| T |
8264457 |
aaacatgttatggactttgtatactatattttac------------tttgaggggaaaattataatattacaatttgattgtccatcggtt |
8264535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 475 - 514
Target Start/End: Complemental strand, 20861193 - 20861154
Alignment:
| Q |
475 |
tgcataacaaaatttgagaaaattacaaatttaaagaaat |
514 |
Q |
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| T |
20861193 |
tgcataacaaattttaagaaaattacaaatttaaagaaat |
20861154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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