View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2745_high_4 (Length: 502)

Name: NF2745_high_4
Description: NF2745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2745_high_4
NF2745_high_4
[»] chr8 (10 HSPs)
chr8 (1-491)||(13410089-13410580)
chr8 (117-172)||(2091788-2091843)
chr8 (180-238)||(26215435-26215493)
chr8 (119-169)||(27645932-27645982)
chr8 (174-220)||(35453690-35453736)
chr8 (179-220)||(2699263-2699304)
chr8 (117-158)||(4281585-4281626)
chr8 (174-223)||(42237489-42237538)
chr8 (174-238)||(4558737-4558801)
chr8 (182-266)||(12224974-12225058)
[»] chr3 (10 HSPs)
chr3 (125-217)||(49586934-49587026)
chr3 (174-236)||(25183055-25183117)
chr3 (174-266)||(20192673-20192765)
chr3 (179-268)||(53736185-53736278)
chr3 (175-237)||(1395611-1395673)
chr3 (127-169)||(27792900-27792942)
chr3 (174-232)||(37689451-37689509)
chr3 (177-238)||(27792811-27792872)
chr3 (117-190)||(36200103-36200176)
chr3 (174-238)||(30669037-30669101)
[»] chr2 (9 HSPs)
chr2 (128-238)||(37033983-37034091)
chr2 (174-238)||(18962105-18962169)
chr2 (174-238)||(28902016-28902080)
chr2 (118-183)||(1939323-1939388)
chr2 (175-220)||(37292415-37292460)
chr2 (125-169)||(16867767-16867811)
chr2 (176-238)||(17952770-17952832)
chr2 (174-238)||(31740026-31740091)
chr2 (117-150)||(45314915-45314948)
[»] chr4 (14 HSPs)
chr4 (174-238)||(30338659-30338723)
chr4 (137-217)||(5131260-5131342)
chr4 (137-183)||(23819103-23819149)
chr4 (117-159)||(28232583-28232625)
chr4 (145-238)||(19422357-19422450)
chr4 (117-182)||(27123342-27123407)
chr4 (201-238)||(32066503-32066540)
chr4 (125-217)||(35743264-35743354)
chr4 (174-235)||(54325104-54325165)
chr4 (174-238)||(21593079-21593142)
chr4 (137-165)||(23967010-23967038)
chr4 (174-238)||(24193524-24193588)
chr4 (117-169)||(46110231-46110283)
chr4 (143-183)||(51808889-51808929)
[»] chr6 (12 HSPs)
chr6 (174-217)||(1402956-1402999)
chr6 (177-238)||(7713964-7714025)
chr6 (174-238)||(30522507-30522571)
chr6 (117-184)||(27909628-27909695)
chr6 (125-178)||(821444-821497)
chr6 (174-223)||(2027473-2027522)
chr6 (117-182)||(2460141-2460206)
chr6 (136-169)||(34404117-34404150)
chr6 (182-238)||(323895-323951)
chr6 (125-173)||(6536971-6537019)
chr6 (117-169)||(7931716-7931768)
chr6 (174-238)||(10452427-10452491)
[»] chr5 (6 HSPs)
chr5 (179-238)||(37063146-37063205)
chr5 (125-169)||(33533537-33533581)
chr5 (174-238)||(35135729-35135793)
chr5 (136-183)||(20028499-20028546)
chr5 (138-183)||(11684428-11684473)
chr5 (174-238)||(19177418-19177482)
[»] chr1 (13 HSPs)
chr1 (136-182)||(625587-625633)
chr1 (125-183)||(47917250-47917308)
chr1 (174-220)||(52286635-52286681)
chr1 (187-236)||(9507080-9507129)
chr1 (143-215)||(23373328-23373398)
chr1 (174-238)||(4256109-4256173)
chr1 (174-238)||(17420142-17420206)
chr1 (117-159)||(3223705-3223747)
chr1 (179-217)||(30815707-30815745)
chr1 (121-159)||(33722395-33722433)
chr1 (174-223)||(4363699-4363748)
chr1 (127-180)||(18403196-18403249)
chr1 (136-190)||(49557150-49557208)
[»] chr7 (8 HSPs)
chr7 (174-238)||(31002700-31002764)
chr7 (186-233)||(40687606-40687653)
chr7 (117-172)||(45859517-45859571)
chr7 (174-223)||(6630554-6630603)
chr7 (174-215)||(40689053-40689094)
chr7 (174-238)||(1413145-1413209)
chr7 (178-238)||(1417203-1417263)
chr7 (143-183)||(12792709-12792749)


Alignment Details
Target: chr8 (Bit Score: 411; Significance: 0; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 491
Target Start/End: Original strand, 13410089 - 13410580
Alignment:
Q  1 tgataggacttaggagtagaagactctagactcgtacatgtttgggttaacttatttcatttttctattgacataagtatttacgagacattttaagaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13410089 tgataggacttaggagtagaagactctagactcgtacatgtttgggttaacttatttgatttttctattgacataagtatttacgagacattttaagaga 13410188  T
Q  101 gcatatagaaacaaacaaacaacatatgacatatttataagttgttttcaacttatttctgtaagctcttcagtatagcttatatgaaaatagtttaaca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13410189 gcatatagaaacaaacaaacaacatatgacatatttataagttgtttttaacttatttctgtaagctcttcagtatagcttatatgaaaatagtttaaca 13410288  T
Q  201 ttattttaacttttgttgtaaaagtagtttatacataatggattaattgagttgtttatccaaacaagaccatttattgctaattgaaataaatctgggg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||||||| | |    
T  13410289 ttattttaacttttgttgtaaaagtagtttatacataatggattaattaagttgtttatccaaacaagaccatgtattgctaattggaataaatctagag 13410388  T
Q  301 gagattta-nnnnnnnaatctattttctctgatcaaagactctcaaacctaatcttcttttaaagaaaattgagatctttattccttaggagttaggact 399  Q
    ||||||||        ||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  13410389 gagatttattttttttaatctattttctccgatcaaagaccctcaaacctaatcttctcttaaagaaaattgagatctttattccttaggagttaggact 13410488  T
Q  400 caagaccatcatgtgttggtaagtaaatataaaaactttcatgaaaagaatatgctacctagaaatatatgcatatattattaaatataaaa 491  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  13410489 caagaccatcatgtgttggtaaataaatataaaaactttcatgaaaagaatatgctacctagaaaaatatgcatatatttttaaatataaaa 13410580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 172
Target Start/End: Complemental strand, 2091843 - 2091788
Alignment:
Q  117 aaacaacatatgacatatttataagttgttttcaacttatttctgtaagctcttca 172  Q
    ||||||| ||||| ||||  |||||||||||||||||||||||| || ||||||||    
T  2091843 aaacaacttatgatatatccataagttgttttcaacttatttctatatgctcttca 2091788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 238
Target Start/End: Complemental strand, 26215493 - 26215435
Alignment:
Q  180 ttatatgaaaatagtttaacattattttaacttttgttgtaaaagtagtttatacataa 238  Q
    ||||| |||||||||||||| |||||||| |||||||| || || ||| ||||||||||    
T  26215493 ttatacgaaaatagtttaactttattttatcttttgttatagaaatagcttatacataa 26215435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 119 - 169
Target Start/End: Complemental strand, 27645982 - 27645932
Alignment:
Q  119 acaacatatgacatatttataagttgttttcaacttatttctgtaagctct 169  Q
    ||||| |||||||||| |||||| | |||||||||||||||| ||||||||    
T  27645982 acaacttatgacatatctataagctattttcaacttatttctataagctct 27645932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 220
Target Start/End: Original strand, 35453690 - 35453736
Alignment:
Q  174 tatagcttatatgaaaatagtttaacattattttaacttttgttgta 220  Q
    |||| ||||||||||| ||||||||| |||||||| |||||||||||    
T  35453690 tataacttatatgaaactagtttaactttattttatcttttgttgta 35453736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 220
Target Start/End: Complemental strand, 2699304 - 2699263
Alignment:
Q  179 cttatatgaaaatagtttaacattattttaacttttgttgta 220  Q
    ||||||||||||||||||||| ||||||||  ||||||||||    
T  2699304 cttatatgaaaatagtttaactttattttatattttgttgta 2699263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 158
Target Start/End: Complemental strand, 4281626 - 4281585
Alignment:
Q  117 aaacaacatatgacatatttataagttgttttcaacttattt 158  Q
    |||||||||||||||| || |||||||||||||| |||||||    
T  4281626 aaacaacatatgacatgttcataagttgttttcatcttattt 4281585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 42237489 - 42237538
Alignment:
Q  174 tatagcttatatgaaaatagtttaacattattttaacttttgttgtaaaa 223  Q
    ||||||||||||||||| | |||||| |||||||| |||||||| |||||    
T  42237489 tatagcttatatgaaaacaatttaactttattttatcttttgttataaaa 42237538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 4558801 - 4558737
Alignment:
Q  174 tatagcttatatgaaaatagtttaacattattttaacttttgttgtaaaagtagtttatacataa 238  Q
    |||||| |||||||||||| |||||| |||||||| ||||| || || || ||| ||||||||||    
T  4558801 tatagcatatatgaaaataatttaactttattttatcttttattatagaaatagcttatacataa 4558737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 182 - 266
Target Start/End: Original strand, 12224974 - 12225058
Alignment:
Q  182 atatgaaaatagtttaacattattttaacttttgttgtaaaagtagtttatacataatggattaattgagttgtttatccaaaca 266  Q
    ||||||||||||||| || |||||||| |||||||  || || ||  ||||||||||    |||||| |||||||||||||||||    
T  12224974 atatgaaaatagtttgactttattttatcttttgtcttagaaataacttatacataagctcttaattaagttgtttatccaaaca 12225058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 125 - 217
Target Start/End: Original strand, 49586934 - 49587026
Alignment:
Q  125 tatgacatatttataagttgttttcaacttatttctgtaagctcttcagtatagcttatatgaaaatagtttaacattattttaacttttgtt 217  Q
    ||||||||||  ||||||||||||||  |||||||| ||| |||| ||  |||||||||||||||| ||||| || |||||||| ||||||||    
T  49586934 tatgacatatccataagttgttttcagtttatttctttaatctctccaagatagcttatatgaaaacagtttgactttattttatcttttgtt 49587026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 25183055 - 25183117
Alignment:
Q  174 tatagcttatatgaaaatagtttaacattattttaacttttgttgtaaaagtagtttatacat 236  Q
    ||||||| |||||||||||| ||||| |||||| | |||||||| ||||| ||||||||||||    
T  25183055 tatagctcatatgaaaatagcttaactttatttaatcttttgttataaaaatagtttatacat 25183117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 266
Target Start/End: Original strand, 20192673 - 20192765
Alignment:
Q  174 tatagcttatatgaaaatagtttaacattattttaacttttgttgtaaaagtagtttatacataatggattaattgagttgtttatccaaaca 266  Q
    ||||| |||||||||||  |||| || |||||||| |||||||| || || ||| ||||||||||    ||||||||| ||||||||||||||    
T  20192673 tatagattatatgaaaactgtttgactttattttatcttttgttatataaatagcttatacataagcacttaattgagctgtttatccaaaca 20192765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 268
Target Start/End: Original strand, 53736185 - 53736278
Alignment:
Q  179 cttatatgaaaatagtttaacattattttaacttttgttgtaaaagtagtttatacataa----tggattaattgagttgtttatccaaacaag 268  Q
    |||||||||||||||||| ||||||||||| |||||||| || || ||  | |||| |||    | |||||||| |||||||||||||||||||    
T  53736185 cttatatgaaaatagtttgacattattttatcttttgttatagaaataactcatacgtaagcacttgattaattaagttgtttatccaaacaag 53736278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 1395673 - 1395611
Alignment:
Q  175 atagcttatatgaaaatagtttaacattattttaacttttgttgtaaaagtagtttatacata 237  Q
    |||||||||||||||||| ||| || |||||||| |||||||| || || ||| |||||||||    
T  1395673 atagcttatatgaaaataatttgactttattttatcttttgttatagaaatagcttatacata 1395611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 169
Target Start/End: Complemental strand, 27792942 - 27792900
Alignment:
Q  127 tgacatatttataagttgttttcaacttatttctgtaagctct 169  Q
    ||||| |||||||||||||||||| ||||||||| ||||||||    
T  27792942 tgacaaatttataagttgttttcagcttatttctataagctct 27792900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 232
Target Start/End: Original strand, 37689451 - 37689509
Alignment:
Q  174 tatagcttatatgaaaatagtttaacattattttaacttttgttgtaaaagtagtttat 232  Q
    ||||||||||||||||||| |||||| ||| |||| |||||||| ||||| ||| ||||    
T  37689451 tatagcttatatgaaaataatttaactttactttatcttttgttataaaaatagcttat 37689509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 27792872 - 27792811
Alignment:
Q  177 agcttatatgaaaatagtttaacattattttaacttttgttgtaaaagtagtttatacataa 238  Q
    |||||||||||||||||||| || |||||||| |||||||| |  || ||| ||||||||||    
T  27792872 agcttatatgaaaatagtttgaccttattttatcttttgtttttgaaatagcttatacataa 27792811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 190
Target Start/End: Complemental strand, 36200176 - 36200103
Alignment:
Q  117 aaacaacatatgacatatttataagttgttttcaacttatttctgtaagctcttcagtatagcttatatgaaaa 190  Q
    ||||||| |||||||| |  |||||||||||||| ||||||||  | |||||| ||| |||||||||| |||||    
T  36200176 aaacaacttatgacatgtccataagttgttttcagcttatttccatgagctctacaggatagcttataagaaaa 36200103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 30669037 - 30669101
Alignment:
Q  174 tatagcttatatgaaaatagtttaacattattttaacttttgttgtaaaagtagtttatacataa 238  Q
    ||||| ||||| ||||| | || |||||||||||| |||||||| ||||| ||| ||||||||||    
T  30669037 tatagtttataagaaaaaaattcaacattattttatcttttgttataaaaatagcttatacataa 30669101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 128 - 238
Target Start/End: Complemental strand, 37034091 - 37033983
Alignment:
Q  128 gacatatttataagttgttttcaacttatttctgtaagctcttcagtatagcttatatgaaaatagtttaacattattttaacttttgttgtaaaagtag 227  Q
    ||||| ||||||| ||||||||||||||||||| |||||||| ||  ||| ||  ||||||||| |||| || |||||||| ||||| || || || |||    
T  37034091 gacatgtttataaattgttttcaacttatttctataagctctccataatatct--tatgaaaatcgtttgactttattttatctttttttatagaaatag 37033994  T
Q  228 tttatacataa 238  Q
    |||||||||||    
T  37033993 tttatacataa 37033983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 18962105 - 18962169
Alignment:
Q  174 tatagcttatatgaaaatagtttaacattattttaacttttgttgtaaaagtagtttatacataa 238  Q
    ||||||||||||||||| |||||||| |||||||| |||||||| ||||| ||| | ||||||||    
T  18962105 tatagcttatatgaaaacagtttaactttattttatcttttgttataaaaatagctaatacataa 18962169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 28902080 - 28902016
Alignment:
Q  174 tatagcttatatgaaaatagtttaacattattttaacttttgttgtaaaagtagtttatacataa 238  Q
    ||||||||||||||||| |||||||  |||||||||||| |||| ||||| ||| ||||||||||    
T  28902080 tatagcttatatgaaaacagtttaattttattttaacttatgttataaaaatagcttatacataa 28902016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 118 - 183
Target Start/End: Original strand, 1939323 - 1939388
Alignment:
Q  118 aacaacatatgacatatttataagttgttttcaacttatttctgtaagctcttcagtatagcttat 183  Q
    |||||| |||||||| |  ||||| |||||||||||||||||  |||||||| |||||||||||||    
T  1939323 aacaacttatgacatgtccataagctgttttcaacttatttccataagctctccagtatagcttat 1939388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 37292415 - 37292460
Alignment:
Q  175 atagcttatatgaaaatagtttaacattattttaacttttgttgta 220  Q
    |||||||||||||||||||||| || |||||||| |||||||||||    
T  37292415 atagcttatatgaaaatagttttactttattttatcttttgttgta 37292460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 169
Target Start/End: Complemental strand, 16867811 - 16867767
Alignment:
Q  125 tatgacatatttataagttgttttcaacttatttctgtaagctct 169  Q
    ||||||||||| |||||||||||||||||||||||  ||||||||    
T  16867811 tatgacatattcataagttgttttcaacttatttccataagctct 16867767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 176 - 238
Target Start/End: Original strand, 17952770 - 17952832
Alignment:
Q  176 tagcttatatgaaaatagtttaacattattttaacttttgttgtaaaagtagtttatacataa 238  Q
    ||||||||||||||||||||| || |||||||| |||||||| || || ||| ||||| ||||    
T  17952770 tagcttatatgaaaatagtttgactttattttatcttttgttatagaaatagcttatatataa 17952832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 31740026 - 31740091
Alignment:
Q  174 tatagcttatatgaaaatagtttaacattattttaacttttgttgtaaaagtag-tttatacataa 238  Q
    ||||||||||||||||||||||| || |||||||| |||| ||| || || ||| |||||||||||    
T  31740026 tatagcttatatgaaaatagtttgactttattttatctttagttatagaaatagctttatacataa 31740091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 150
Target Start/End: Complemental strand, 45314948 - 45314915
Alignment:
Q  117 aaacaacatatgacatatttataagttgttttca 150  Q
    ||||||| ||||||||||||||||||||||||||    
T  45314948 aaacaacttatgacatatttataagttgttttca 45314915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 30338659 - 30338723
Alignment:
Q  174 tatagcttatatgaaaatagtttaacattattttaacttttgttgtaaaagtagtttatacataa 238  Q
    ||||||||||||||||| |||||||| ||||| || |||||||| || || ||||||||||||||    
T  30338659 tatagcttatatgaaaacagtttaactttattctatcttttgttatagaaatagtttatacataa 30338723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 217
Target Start/End: Original strand, 5131260 - 5131342
Alignment:
Q  137 ataagttgttttcaacttatttctgtaagctcttcagtatagc--ttatatgaaaatagtttaacattattttaacttttgtt 217  Q
    |||||||||||||| ||||||||  |||||||| ||| |||||  ||| ||||||| | |||||| |||||||| ||||||||    
T  5131260 ataagttgttttcagcttatttccataagctctccaggatagcttttacatgaaaacattttaactttattttatcttttgtt 5131342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 23819149 - 23819103
Alignment:
Q  137 ataagttgttttcaacttatttctgtaagctcttcagtatagcttat 183  Q
    |||||||||||||| ||||||||| |||||||||||  |||||||||    
T  23819149 ataagttgttttcatcttatttctataagctcttcaagatagcttat 23819103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 159
Target Start/End: Complemental strand, 28232625 - 28232583
Alignment:
Q  117 aaacaacatatgacatatttataagttgttttcaacttatttc 159  Q
    ||||||| |||||| ||||||||||||||||||| ||||||||    
T  28232625 aaacaacttatgacttatttataagttgttttcatcttatttc 28232583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 238
Target Start/End: Complemental strand, 19422450 - 19422357
Alignment:
Q  145 ttttcaacttatttctgtaagctcttcagtatagcttatatgaaaatagtttaacattattttaacttttgttgtaaaagtagtttatacataa 238  Q
    |||||||||||||||  |||||||| ||| |||| |||||||||||  |||| || ||||| || |||||||| || || ||  ||||||||||    
T  19422450 ttttcaacttatttccataagctctccaggatagtttatatgaaaaatgtttgactttattatatcttttgttatagaaataacttatacataa 19422357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 182
Target Start/End: Original strand, 27123342 - 27123407
Alignment:
Q  117 aaacaacatatgacatatttataagttgttttcaacttatttctgtaagctcttcagtatagctta 182  Q
    ||||||| |||||||| | | ||||||||||||||||||||||  |||||||| ||  ||||||||    
T  27123342 aaacaacttatgacatgtctttaagttgttttcaacttatttccataagctctccataatagctta 27123407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 32066503 - 32066540
Alignment:
Q  201 ttattttaacttttgttgtaaaagtagtttatacataa 238  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  32066503 ttattttatcttttgttataaaagtagtttatacataa 32066540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 217
Target Start/End: Complemental strand, 35743354 - 35743264
Alignment:
Q  125 tatgacatatttataagttgttttcaacttatttctgtaagctcttcagtatagcttatatgaaaatagtttaacattattttaacttttgtt 217  Q
    |||||||| |||||||||||||| |||||||||||  ||| |||||||  ||||  | ||||||| ||||||  | |||||||| ||||||||    
T  35743354 tatgacatgtttataagttgtttccaacttatttccataaactcttcatgatag--tttatgaaagtagtttgcctttattttatcttttgtt 35743264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 54325104 - 54325165
Alignment:
Q  174 tatagcttatatgaaaatagtttaacattattttaacttttgttgtaaaagtagtttataca 235  Q
    ||||||||||||||||| ||||| || |||||||| |||||||  || || |||||||||||    
T  54325104 tatagcttatatgaaaacagtttgactttattttatcttttgtaatagaaatagtttataca 54325165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 21593079 - 21593142
Alignment:
Q  174 tatagcttatatgaaaatagtttaacattattttaacttttgttgtaaaagtagtttatacataa 238  Q
    |||||||||||||||||||| || || |||||||| |||| ||| || || ||||||||||||||    
T  21593079 tatagcttatatgaaaatag-ttgactttattttatctttagttatagaaatagtttatacataa 21593142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 137 - 165
Target Start/End: Original strand, 23967010 - 23967038
Alignment:
Q  137 ataagttgttttcaacttatttctgtaag 165  Q
    |||||||||||||||||||||||||||||    
T  23967010 ataagttgttttcaacttatttctgtaag 23967038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 24193588 - 24193524
Alignment:
Q  174 tatagcttatatgaaaatagtttaacattattttaacttttgttgtaaaagtagtttatacataa 238  Q
    |||| |||||||||||||||||||||  | |||||  ||||||||||||| ||  ||||||||||    
T  24193588 tataacttatatgaaaatagtttaactctgttttatattttgttgtaaaaataacttatacataa 24193524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 46110283 - 46110231
Alignment:
Q  117 aaacaacatatgacatatttataagttgttttcaacttatttctgtaagctct 169  Q
    ||||||| ||||| ||| | |||||||||||||| ||||||||| ||||||||    
T  46110283 aaacaacttatgatatactcataagttgttttcagcttatttctataagctct 46110231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 51808889 - 51808929
Alignment:
Q  143 tgttttcaacttatttctgtaagctcttcagtatagcttat 183  Q
    |||||||||||||||||| |||||||| ||| |||||||||    
T  51808889 tgttttcaacttatttctataagctctccaggatagcttat 51808929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 174 - 217
Target Start/End: Complemental strand, 1402999 - 1402956
Alignment:
Q  174 tatagcttatatgaaaatagtttaacattattttaacttttgtt 217  Q
    |||||||||||||||||||||||||| |||||||| ||||||||    
T  1402999 tatagcttatatgaaaatagtttaactttattttatcttttgtt 1402956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 7714025 - 7713964
Alignment:
Q  177 agcttatatgaaaatagtttaacattattttaacttttgttgtaaaagtagtttatacataa 238  Q
    |||||||||||||| | ||| || |||||||| |||||||| | ||||||||||||||||||    
T  7714025 agcttatatgaaaacaatttgactttattttatcttttgttatgaaagtagtttatacataa 7713964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 30522507 - 30522571
Alignment:
Q  174 tatagcttatatgaaaatagtttaacattattttaacttttgttgtaaaagtagtttatacataa 238  Q
    ||||||||||||||||||||||| || ||||||||| ||||||| |  |||||  ||||||||||    
T  30522507 tatagcttatatgaaaatagtttcactttattttaaattttgttttggaagtatcttatacataa 30522571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 184
Target Start/End: Original strand, 27909628 - 27909695
Alignment:
Q  117 aaacaacatatgacatatttataagttgttttcaacttatttctgtaagctcttcagtatagcttata 184  Q
    |||||| ||||||||| |  |||||||||||||| ||||||||  |||||||| ||||| ||||||||    
T  27909628 aaacaatatatgacatgtccataagttgttttcagcttatttccataagctctccagtaaagcttata 27909695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 178
Target Start/End: Complemental strand, 821497 - 821444
Alignment:
Q  125 tatgacatatttataagttgttttcaacttatttctgtaagctcttcagtatag 178  Q
    |||||||| || |||||| ||||||| ||||||||| ||| |||||||||||||    
T  821497 tatgacatgttcataagtcgttttcagcttatttctataacctcttcagtatag 821444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 2027473 - 2027522
Alignment:
Q  174 tatagcttatatgaaaatagtttaacattattttaacttttgttgtaaaa 223  Q
    ||||| ||||||||||||||||| || |||||||| |||||||| |||||    
T  2027473 tataggttatatgaaaatagtttgactttattttatcttttgttataaaa 2027522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 182
Target Start/End: Original strand, 2460141 - 2460206
Alignment:
Q  117 aaacaacatatgacatatttataagttgttttcaacttatttctgtaagctcttcagtatagctta 182  Q
    ||||||| |||||||| | | ||||||||||||||||||||||  |||||||| ||  ||||||||    
T  2460141 aaacaacttatgacatgtctttaagttgttttcaacttatttccataagctctccataatagctta 2460206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 169
Target Start/End: Complemental strand, 34404150 - 34404117
Alignment:
Q  136 tataagttgttttcaacttatttctgtaagctct 169  Q
    ||||||||||||||||||||||||| ||||||||    
T  34404150 tataagttgttttcaacttatttctataagctct 34404117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 323951 - 323895
Alignment:
Q  182 atatgaaaatagtttaacattattttaacttttgttgtaaaagtagtttatacataa 238  Q
    ||||||||| ||||| |  || ||||||||||||||||| |||||| ||||||||||    
T  323951 atatgaaaacagtttgaatttgttttaacttttgttgtagaagtagcttatacataa 323895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 6537019 - 6536971
Alignment:
Q  125 tatgacatatttataagttgttttcaacttatttctgtaagctcttcag 173  Q
    |||||||| || |||||||||||||| ||||||||  ||||||||||||    
T  6537019 tatgacatgttcataagttgttttcagcttatttccataagctcttcag 6536971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 7931716 - 7931768
Alignment:
Q  117 aaacaacatatgacatatttataagttgttttcaacttatttctgtaagctct 169  Q
    ||||||| |||||||| ||  ||||||||||||| |||||||| |||||||||    
T  7931716 aaacaacttatgacatgttcttaagttgttttcagcttatttccgtaagctct 7931768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 10452427 - 10452491
Alignment:
Q  174 tatagcttatatgaaaatagtttaacattattttaacttttgttgtaaaagtagtttatacataa 238  Q
    ||||||||||||||||||||||| |  ||||||||  ||||||| || || ||| ||||||||||    
T  10452427 tatagcttatatgaaaatagtttgattttattttatattttgttatagaaatagcttatacataa 10452491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 37063146 - 37063205
Alignment:
Q  179 cttatatgaaaatagtttaacattattttaacttttgttgtaaaagtagtttatacataa 238  Q
    |||||||||||||||||| || |||||||| |||||||| || || ||||||||||||||    
T  37063146 cttatatgaaaatagtttgactttattttatcttttgttatagaaatagtttatacataa 37063205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 33533537 - 33533581
Alignment:
Q  125 tatgacatatttataagttgttttcaacttatttctgtaagctct 169  Q
    ||||||||||| |||||||||||||||||||||||  ||||||||    
T  33533537 tatgacatattcataagttgttttcaacttatttccataagctct 33533581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 35135729 - 35135793
Alignment:
Q  174 tatagcttatatgaaaatagtttaacattattttaacttttgttgtaaaagtagtttatacataa 238  Q
    ||||||||||||||||||||||| || |||||||| |||||||| || || ||  ||||||||||    
T  35135729 tatagcttatatgaaaatagtttgactttattttatcttttgttatagaaatatcttatacataa 35135793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 183
Target Start/End: Original strand, 20028499 - 20028546
Alignment:
Q  136 tataagttgttttcaacttatttctgtaagctcttcagtatagcttat 183  Q
    ||||||||||||||| ||||||||| |||||||||||  |||||||||    
T  20028499 tataagttgttttcagcttatttctataagctcttcataatagcttat 20028546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 183
Target Start/End: Complemental strand, 11684473 - 11684428
Alignment:
Q  138 taagttgttttcaacttatttctgtaagctcttcagtatagcttat 183  Q
    |||| ||||||||||||||||| ||||||||| ||| |||||||||    
T  11684473 taagctgttttcaacttatttccgtaagctctccagcatagcttat 11684428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 19177482 - 19177418
Alignment:
Q  174 tatagcttatatgaaaatagtttaacattattttaacttttgttgtaaaagtagtttatacataa 238  Q
    ||||||||||||||||| ||||  || | |||||| ||| ||||||| || ||||||||||||||    
T  19177482 tatagcttatatgaaaacagttagacttaattttatcttctgttgtagaaatagtttatacataa 19177418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 625633 - 625587
Alignment:
Q  136 tataagttgttttcaacttatttctgtaagctcttcagtatagctta 182  Q
    ||||||||||||||||||||||||| |||||||||||| ||| ||||    
T  625633 tataagttgttttcaacttatttctataagctcttcagaatatctta 625587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 183
Target Start/End: Complemental strand, 47917308 - 47917250
Alignment:
Q  125 tatgacatatttataagttgttttcaacttatttctgtaagctcttcagtatagcttat 183  Q
    |||||||| || |||||||||||||||||||||||| ||| || ||| |||||||||||    
T  47917308 tatgacatgttcataagttgttttcaacttatttctttaaacttttcggtatagcttat 47917250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 220
Target Start/End: Complemental strand, 52286681 - 52286635
Alignment:
Q  174 tatagcttatatgaaaatagtttaacattattttaacttttgttgta 220  Q
    |||||||||||||||||| ||||||| |||||||| |||||||||||    
T  52286681 tatagcttatatgaaaattgtttaactttattttatcttttgttgta 52286635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 187 - 236
Target Start/End: Original strand, 9507080 - 9507129
Alignment:
Q  187 aaaatagtttaacattattttaacttttgttgtaaaagtagtttatacat 236  Q
    ||||||||||||||||||||||||||||||| || || ||| ||||||||    
T  9507080 aaaatagtttaacattattttaacttttgttatagaaatagcttatacat 9507129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 143 - 215
Target Start/End: Original strand, 23373328 - 23373398
Alignment:
Q  143 tgttttcaacttatttctgtaagctcttcagtatagcttatatgaaaatagtttaacattattttaacttttg 215  Q
    |||||||| |||||||||||||||||||||| ||||||  |||||||| || || || |||||||| ||||||    
T  23373328 tgttttcagcttatttctgtaagctcttcaggatagct--tatgaaaacagattgactttattttatcttttg 23373398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 4256109 - 4256173
Alignment:
Q  174 tatagcttatatgaaaatagtttaacattattttaacttttgttgtaaaagtagtttatacataa 238  Q
    ||||||||||| ||||||| |||||| ||||| || ||||||||||| || ||| ||||||||||    
T  4256109 tatagcttatacgaaaataatttaactttattgtatcttttgttgtagaaatagcttatacataa 4256173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 17420206 - 17420142
Alignment:
Q  174 tatagcttatatgaaaatagtttaacattattttaacttttgttgtaaaagtagtttatacataa 238  Q
    |||||||||||||||||| |||  || |||||||| ||||| || ||||| ||||||||||||||    
T  17420206 tatagcttatatgaaaattgttcgactttattttatcttttcttataaaaatagtttatacataa 17420142  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 159
Target Start/End: Complemental strand, 3223747 - 3223705
Alignment:
Q  117 aaacaacatatgacatatttataagttgttttcaacttatttc 159  Q
    ||||||| |||||||| ||||||||||||||||| ||||||||    
T  3223747 aaacaacttatgacatgtttataagttgttttcagcttatttc 3223705  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 217
Target Start/End: Original strand, 30815707 - 30815745
Alignment:
Q  179 cttatatgaaaatagtttaacattattttaacttttgtt 217  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  30815707 cttatatgaaaatagtttaactttattttatcttttgtt 30815745  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 159
Target Start/End: Original strand, 33722395 - 33722433
Alignment:
Q  121 aacatatgacatatttataagttgttttcaacttatttc 159  Q
    |||||||||||||| ||||||||||||||| ||||||||    
T  33722395 aacatatgacatatctataagttgttttcagcttatttc 33722433  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 4363699 - 4363748
Alignment:
Q  174 tatagcttatatgaaaatagtttaacattattttaacttttgttgtaaaa 223  Q
    ||||||||||||||||| ||||| ||||||||| | |||||||| |||||    
T  4363699 tatagcttatatgaaaacagtttgacattatttaatcttttgttataaaa 4363748  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 18403196 - 18403249
Alignment:
Q  127 tgacatatttataagttgttttcaacttatttctgtaagctcttcagtatagct 180  Q
    |||||| ||||||| ||||| ||||||||||| |||||||||| ||| ||||||    
T  18403196 tgacatgtttataaattgttctcaacttatttttgtaagctctccagaatagct 18403249  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 190
Target Start/End: Complemental strand, 49557208 - 49557150
Alignment:
Q  136 tataagttgttttcaacttatttctgta----agctcttcagtatagcttatatgaaaa 190  Q
    ||||||||||||||| ||||||||| ||    |||||||||| ||||||||||||||||    
T  49557208 tataagttgttttcagcttatttctataagctagctcttcaggatagcttatatgaaaa 49557150  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 31002764 - 31002700
Alignment:
Q  174 tatagcttatatgaaaatagtttaacattattttaacttttgttgtaaaagtagtttatacataa 238  Q
    ||||||||||||||||||| ||| || |||||||| ||||||| ||  || ||||||||||||||    
T  31002764 tatagcttatatgaaaatattttgactttattttatcttttgtggttgaaatagtttatacataa 31002700  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 233
Target Start/End: Original strand, 40687606 - 40687653
Alignment:
Q  186 gaaaatagtttaacattattttaacttttgttgtaaaagtagtttata 233  Q
    |||||||| ||||||||||||||||||||||| || || |||||||||    
T  40687606 gaaaatagattaacattattttaacttttgttatagaaatagtttata 40687653  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 172
Target Start/End: Original strand, 45859517 - 45859571
Alignment:
Q  117 aaacaacatatgacatatttataagttgttttcaacttatttctgtaagctcttca 172  Q
    |||||||||||||||| || ||| |||||||||| ||||||||| |||||||||||    
T  45859517 aaacaacatatgacatgttcata-gttgttttcagcttatttctataagctcttca 45859571  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 6630603 - 6630554
Alignment:
Q  174 tatagcttatatgaaaatagtttaacattattttaacttttgttgtaaaa 223  Q
    |||| ||| ||||| ||||||||||| |||||||| ||||||||||||||    
T  6630603 tataccttgtatgataatagtttaactttattttatcttttgttgtaaaa 6630554  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 40689053 - 40689094
Alignment:
Q  174 tatagcttatatgaaaatagtttaacattattttaacttttg 215  Q
    ||||||||||||||||||| |||||| |||||||| ||||||    
T  40689053 tatagcttatatgaaaataatttaactttattttatcttttg 40689094  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 1413145 - 1413209
Alignment:
Q  174 tatagcttatatgaaaatagtttaacattattttaacttttgttgtaaaagtagtttatacataa 238  Q
    ||||| ||||||||||| |||| ||| |||||||| |||||||| | ||| ||||||| ||||||    
T  1413145 tatagattatatgaaaaaagttcaactttattttaccttttgttattaaaatagtttagacataa 1413209  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 1417263 - 1417203
Alignment:
Q  178 gcttatatgaaaatagtttaacattattttaacttttgttgtaaaagtagtttatacataa 238  Q
    ||||||||||||| | ||| || |||||||| |||||||| || || ||||||||||||||    
T  1417263 gcttatatgaaaacaatttgactttattttatcttttgttatataaatagtttatacataa 1417203  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 12792709 - 12792749
Alignment:
Q  143 tgttttcaacttatttctgtaagctcttcagtatagcttat 183  Q
    |||||||| |||||||| ||||||||||||| |||||||||    
T  12792709 tgttttcagcttatttccgtaagctcttcagaatagcttat 12792749  T

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