View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2745_high_6 (Length: 371)

Name: NF2745_high_6
Description: NF2745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2745_high_6
NF2745_high_6
[»] chr4 (4 HSPs)
chr4 (1-356)||(4115314-4115670)
chr4 (4-128)||(15131508-15131634)
chr4 (5-136)||(53999981-54000114)
chr4 (3-58)||(25234299-25234354)
[»] chr3 (4 HSPs)
chr3 (5-128)||(39341215-39341340)
chr3 (8-83)||(54028612-54028687)
chr3 (2-93)||(7938118-7938211)
chr3 (1-47)||(54437905-54437951)
[»] chr6 (4 HSPs)
chr6 (2-128)||(32047190-32047318)
chr6 (76-128)||(23577167-23577219)
chr6 (75-130)||(32342614-32342669)
chr6 (11-59)||(26236596-26236644)
[»] chr5 (5 HSPs)
chr5 (24-126)||(39730261-39730363)
chr5 (4-130)||(7113547-7113675)
chr5 (75-133)||(2243322-2243380)
chr5 (75-130)||(14138559-14138614)
chr5 (4-128)||(40483698-40483823)
[»] chr2 (3 HSPs)
chr2 (29-122)||(2909844-2909939)
chr2 (1-130)||(16576262-16576392)
chr2 (75-128)||(38576943-38576996)
[»] chr1 (4 HSPs)
chr1 (76-130)||(10775177-10775231)
chr1 (75-130)||(46080985-46081040)
chr1 (77-130)||(52432675-52432728)
chr1 (75-123)||(3231979-3232027)
[»] chr7 (5 HSPs)
chr7 (24-125)||(23944095-23944198)
chr7 (75-130)||(32138892-32138947)
chr7 (18-58)||(27651288-27651328)
chr7 (8-136)||(34891541-34891671)
chr7 (76-130)||(31152738-31152792)
[»] chr8 (4 HSPs)
chr8 (75-133)||(35574646-35574704)
chr8 (75-136)||(32166641-32166702)
chr8 (77-130)||(6630547-6630600)
chr8 (5-58)||(35574743-35574796)


Alignment Details
Target: chr4 (Bit Score: 273; Significance: 1e-152; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 4115314 - 4115670
Alignment:
Q  1 ccccttgatgaattaaggg-taatttacccctaatgataaataagattcaattttggaataaggtaaacggagatcatgttgaatgaatgagatggagaa 99  Q
    ||||||||||||||| ||| | |  |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  4115314 ccccttgatgaattagggggtgaactacccctaatgataaataagattcaattttggaacaagataaacggagatcatgttgaatgaatgagatggagaa 4115413  T
Q  100 gtttcatgttcttaagatgaaaatggtaattaatagtnnnnnnnnnnnnccatatcggtgagctagatttttctatgaatgtgatatattgtcatatcac 199  Q
    |||||||||||||||||| ||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4115414 gtttcatgttcttaagataaaaatggtaattaatagtaaaaagaaaaaaccatatcggtgagctagatttttctatgaatgtgatatattgtcatatcac 4115513  T
Q  200 aagaacatgatatattgttgcctgagttcaagtctacagtttctcacttctcagcacttagttataatgatatccacacaaagagacgacggcaccttgt 299  Q
    |||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4115514 aagaacatgatatattgttgcccgaattcaaatctacagtttctcacttctcagcacttagttataatgatatccacacaaagagacgacggcaccttgt 4115613  T
Q  300 caattggtgtgttgggtttatctttattgtcaatgtgttagtattttcactttagtc 356  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4115614 caattggtgtgttgggtttatctttattgtcaatgtgttagtattttcactttagtc 4115670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 128
Target Start/End: Original strand, 15131508 - 15131634
Alignment:
Q  4 cttgatgaattaagggtaatttacccctaatgataaataagattcaattttggaataaggtaaacggagat--catgttgaatgaatgagatggagaagt 101  Q
    ||||||||||||||||| |||||| |||||| | |||||||||| ||||||  ||  | |||||  |||||  |||| |||||||| |||||| |||| |    
T  15131508 cttgatgaattaagggtgatttactcctaataagaaataagatttaatttttaaacgaagtaaatagagatcacatgctgaatgaaggagatgaagaaat 15131607  T
Q  102 ttcatgttcttaagatgaaaatggtaa 128  Q
    || |||||||| |||| ||||||||||    
T  15131608 ttgatgttcttgagataaaaatggtaa 15131634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 5 - 136
Target Start/End: Original strand, 53999981 - 54000114
Alignment:
Q  5 ttgatgaattaagggtaatttacccctaatgataaataagattcaattttggaataaggtaaacggagat--catgttgaatgaatgagatggagaagtt 102  Q
    |||||||||||  ||||||||| |||||| ||||||||||||| ||||||  ||  | ||||| ||||||  |||||||||| |||| |||| |    ||    
T  53999981 ttgatgaattagaggtaatttagccctaaagataaataagatttaattttaaaacgaagtaaatggagatcacatgttgaataaatgtgatgaatttttt 54000080  T
Q  103 tcatgttcttaagatgaaaatggtaattaatagt 136  Q
    | |||||||| ||||||||||||||||| |||||    
T  54000081 tgatgttcttgagatgaaaatggtaattgatagt 54000114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 25234299 - 25234354
Alignment:
Q  3 ccttgatgaattaagggtaatttacccctaatgataaataagattcaattttggaa 58  Q
    ||||||||||||| |||||||||||| || |||| ||||| ||||| |||||||||    
T  25234299 ccttgatgaattacgggtaatttaccgctcatgacaaatacgattcgattttggaa 25234354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 5 - 128
Target Start/End: Complemental strand, 39341340 - 39341215
Alignment:
Q  5 ttgatgaattaagggtaatttacccctaatgataaataagattcaattttggaataaggtaaacggaga--tcatgttgaatgaatgagatggagaagtt 102  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||| |||  | ||||| |||||  |||||||||||||| |||||| | |||||    
T  39341340 ttgatgaattaggggtaatttacctctaatgataaataagattcaattttagaacgaagtaaatggagatctcatgttgaatgaaggagatgaaaaagtt 39341241  T
Q  103 tcatgttcttaagatgaaaatggtaa 128  Q
    | || |||||||||||||||||||||    
T  39341240 tgatattcttaagatgaaaatggtaa 39341215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 54028687 - 54028612
Alignment:
Q  8 atgaattaagggtaatttacccctaatgataaataagattcaattttggaataaggtaaacggagatcatgttgaa 83  Q
    ||||||| ||||||||||| ||||||||||||||| ||||||||| || ||| | | | | |||||||||||||||    
T  54028687 atgaattgagggtaatttatccctaatgataaatatgattcaattatgaaatgaaggagatggagatcatgttgaa 54028612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 93
Target Start/End: Complemental strand, 7938211 - 7938118
Alignment:
Q  2 cccttgatgaattaagggtaatttacccctaatgataaataagattcaattttggaataaggtaaacggagat--catgttgaatgaatgagat 93  Q
    |||||||||||||  | ||||||||||| |||||||||||||||||| ||| | ||  || | ||||||||||  ||||||||||||| |||||    
T  7938211 cccttgatgaattgcgtgtaatttacccttaatgataaataagattcgattctagagcaaagaaaacggagatcgcatgttgaatgaaggagat 7938118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 54437951 - 54437905
Alignment:
Q  1 ccccttgatgaattaagggtaatttacccctaatgataaataagatt 47  Q
    ||||||| ||||||| |||||||||||| ||||||||||||| ||||    
T  54437951 ccccttgttgaattaggggtaatttacctctaatgataaatatgatt 54437905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 2 - 128
Target Start/End: Complemental strand, 32047318 - 32047190
Alignment:
Q  2 cccttgatgaattaagggtaatttacccctaatgataaataagattcaattttggaataaggtaaacggagatc--atgttgaatgaatgagatggagaa 99  Q
    ||||||||||||| ||| ||||||||| |||||||||| || ||||||||| |||||| | | | ||| | |||  ||||||||||||||||||| ||||    
T  32047318 cccttgatgaattgaggataatttacctctaatgataagtaggattcaattatggaatgaagaagacgaatatcatatgttgaatgaatgagatgaagaa 32047219  T
Q  100 gtttcatgttcttaagatgaaaatggtaa 128  Q
    |||| |||||||| |||||||||||||||    
T  32047218 gtttgatgttcttgagatgaaaatggtaa 32047190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 23577219 - 23577167
Alignment:
Q  76 atgttgaatgaatgagatggagaagtttcatgttcttaagatgaaaatggtaa 128  Q
    |||||||||||| ||||||||||||| | ||||| || |||||||||||||||    
T  23577219 atgttgaatgaaggagatggagaagtatgatgtttttgagatgaaaatggtaa 23577167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 75 - 130
Target Start/End: Complemental strand, 32342669 - 32342614
Alignment:
Q  75 catgttgaatgaatgagatggagaagtttcatgttcttaagatgaaaatggtaatt 130  Q
    |||||||||||||||||||| | |||||| ||||| || ||||||||||| |||||    
T  32342669 catgttgaatgaatgagatgaaaaagtttgatgtttttgagatgaaaatgataatt 32342614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 26236596 - 26236644
Alignment:
Q  11 aattaagggtaatttacccctaatgataaataagattcaattttggaat 59  Q
    ||||| |||||||||| | ||||||||||||| ||||||||||| ||||    
T  26236596 aattacgggtaatttatctctaatgataaatatgattcaattttagaat 26236644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 24 - 126
Target Start/End: Original strand, 39730261 - 39730363
Alignment:
Q  24 ttacccctaatgataaataagattcaattttggaataaggtaaacggagatcatgttgaatgaatgagatggagaagtttcatgttcttaagatgaaaat 123  Q
    ||||||||||| ||||||||||||||||||| ||| || ||||| | |||||||||| |||||| |||||| | |||||| |||||||| ||||||||||    
T  39730261 ttacccctaatcataaataagattcaattttagaacaaagtaaatgaagatcatgttaaatgaaagagatgaaaaagtttgatgttcttgagatgaaaat 39730360  T
Q  124 ggt 126  Q
    |||    
T  39730361 ggt 39730363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 130
Target Start/End: Original strand, 7113547 - 7113675
Alignment:
Q  4 cttgatgaattaagggtaatttacccctaatgataaataagattcaattttggaataaggtaaacggagat--catgttgaatgaatgagatggagaagt 101  Q
    |||| ||||||| | ||||||||| ||||||||||||||||||| ||||||||||  | ||||| | | ||  || ||||||||||||||||| ||||||    
T  7113547 cttgttgaattaggtgtaatttactcctaatgataaataagatttaattttggaacgatgtaaatgaaaatcacacgttgaatgaatgagatgaagaagt 7113646  T
Q  102 ttcatgttcttaagatgaaaatggtaatt 130  Q
    || || ||||| ||||||||||| |||||    
T  7113647 ttaatattcttgagatgaaaatgataatt 7113675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 133
Target Start/End: Original strand, 2243322 - 2243380
Alignment:
Q  75 catgttgaatgaatgagatggagaagtttcatgttcttaagatgaaaatggtaattaat 133  Q
    ||||||||||||| || ||| |||||||| |||||||| ||||||||||||||| ||||    
T  2243322 catgttgaatgaaggatatgaagaagtttgatgttcttgagatgaaaatggtaactaat 2243380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 75 - 130
Target Start/End: Complemental strand, 14138614 - 14138559
Alignment:
Q  75 catgttgaatgaatgagatggagaagtttcatgttcttaagatgaaaatggtaatt 130  Q
    ||||||||||||| ||||||   |||||| || |||||||||||||||||||||||    
T  14138614 catgttgaatgaaagagatgagaaagtttgatattcttaagatgaaaatggtaatt 14138559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 128
Target Start/End: Complemental strand, 40483823 - 40483698
Alignment:
Q  4 cttgatgaattaagggtaatttacccctaatgataaataagattcaattttggaataaggtaaacggagat--catgttgaatgaatgagatggagaagt 101  Q
    ||||||||||| ||||||| ||||||| |||||||| || ||||| |||||||||  |   | | | ||||  |||||||||||| ||||||| ||||||    
T  40483823 cttgatgaattgagggtaaattacccccaatgataagtatgattcgattttggaacgaatgagatgaagatcacatgttgaatgagtgagatgaagaagt 40483724  T
Q  102 ttcatgttcttaagatgaaaatggtaa 128  Q
    || ||||| || |||||||||| ||||    
T  40483723 ttgatgtt-tttagatgaaaatagtaa 40483698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 122
Target Start/End: Complemental strand, 2909939 - 2909844
Alignment:
Q  29 cctaatgataaataagattcaattttggaataaggtaaacggagat--catgttgaatgaatgagatggagaagtttcatgttcttaagatgaaaa 122  Q
    |||||||||||||||||||||||||| |||| | ||||| | ||||  ||||||||||||| |||||| |||||||| ||||| |||| |||||||    
T  2909939 cctaatgataaataagattcaattttagaatgaagtaaatgtagattacatgttgaatgaaggagatgaagaagtttgatgtttttaaaatgaaaa 2909844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 16576392 - 16576262
Alignment:
Q  1 ccccttgatgaattaagggtaatttacccctaatgataaataagattcaattttggaataaggtaaacggagatca--tgttgaatgaatgagatggaga 98  Q
    ||||||||||||||  || |||||||||||||||||||| || ||||| ||| |||||  |   | | ||||||||  ||||||||||| |||||| |||    
T  16576392 ccccttgatgaattg-ggttaatttacccctaatgataagtatgattcgattctggaacgaatgagaaggagatcacatgttgaatgaaggagatgaaga 16576294  T
Q  99 agtttcatgttcttaagatgaaaatggtaatt 130  Q
    ||||| |||||||| ||| |||||||||||||    
T  16576293 agtttgatgttcttgagaggaaaatggtaatt 16576262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 128
Target Start/End: Original strand, 38576943 - 38576996
Alignment:
Q  75 catgttgaatgaatgagatggagaagtttcatgttcttaagatgaaaatggtaa 128  Q
    ||||||||||||| |||||| |||| ||| |||||||| |||||||||||||||    
T  38576943 catgttgaatgaaagagatgaagaactttaatgttctttagatgaaaatggtaa 38576996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 76 - 130
Target Start/End: Complemental strand, 10775231 - 10775177
Alignment:
Q  76 atgttgaatgaatgagatggagaagtttcatgttcttaagatgaaaatggtaatt 130  Q
    |||||||| ||| |||||| |||||||| ||||||||||||||||||||||||||    
T  10775231 atgttgaacgaaagagatgaagaagtttgatgttcttaagatgaaaatggtaatt 10775177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 130
Target Start/End: Complemental strand, 46081040 - 46080985
Alignment:
Q  75 catgttgaatgaatgagatggagaagtttcatgttcttaagatgaaaatggtaatt 130  Q
    |||||||| |||| |||||| |||||||| |||||||| |||||||||||||||||    
T  46081040 catgttgagtgaaggagatgaagaagtttaatgttcttgagatgaaaatggtaatt 46080985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 77 - 130
Target Start/End: Complemental strand, 52432728 - 52432675
Alignment:
Q  77 tgttgaatgaatgagatggagaagtttcatgttcttaagatgaaaatggtaatt 130  Q
    |||| |||||| |||||| |||||||| |||||||| |||||||||||||||||    
T  52432728 tgttaaatgaaggagatgaagaagtttaatgttcttgagatgaaaatggtaatt 52432675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 3232027 - 3231979
Alignment:
Q  75 catgttgaatgaatgagatggagaagtttcatgttcttaagatgaaaat 123  Q
    |||||||||||||||| ||| ||||||||  ||||||| ||||||||||    
T  3232027 catgttgaatgaatgacatgaagaagtttgttgttcttgagatgaaaat 3231979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 23944198 - 23944095
Alignment:
Q  24 ttacccctaatgataaataagattcaattttggaataaggtaaacggagatca--tgttgaatgaatgagatggagaagtttcatgttcttaagatgaaa 121  Q
    |||||||| ||||||| || ||||| ||| |||||||| | | | ||| ||||  ||||||||||| |||| | |||||||| |||||||||||||||||    
T  23944198 ttacccctgatgataagtatgattcgattctggaataaaggagatggaaatcacatgttgaatgaaagagaagaagaagtttgatgttcttaagatgaaa 23944099  T
Q  122 atgg 125  Q
    ||||    
T  23944098 atgg 23944095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 130
Target Start/End: Original strand, 32138892 - 32138947
Alignment:
Q  75 catgttgaatgaatgagatggagaagtttcatgttcttaagatgaaaatggtaatt 130  Q
    ||||||||| ||| |||||| |||| ||| ||||||||||||||||||||||||||    
T  32138892 catgttgaacgaaggagatgaagaattttgatgttcttaagatgaaaatggtaatt 32138947  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 27651288 - 27651328
Alignment:
Q  18 ggtaatttacccctaatgataaataagattcaattttggaa 58  Q
    ||||||||| ||||||||| |||||||||||||||||||||    
T  27651288 ggtaatttatccctaatgaaaaataagattcaattttggaa 27651328  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 136
Target Start/End: Complemental strand, 34891671 - 34891541
Alignment:
Q  8 atgaattaagggtaatttacccctaatgataaataagattcaattttggaataaggtaaacggagat--catgttgaatgaatgagatggagaagtttca 105  Q
    |||||||| |||||||||||    ||| | |||||||||||||||||  ||  | | ||| ||||||  ||||||||||||| |||||| |||| ||| |    
T  34891671 atgaattaggggtaatttactatcaataacaaataagattcaattttataacgaagcaaatggagatcacatgttgaatgaaggagatgaagaaatttga 34891572  T
Q  106 tgttcttaagatgaaaatggtaattaatagt 136  Q
    ||||||| |||| |||||| ||| |||||||    
T  34891571 tgttcttgagatcaaaatgataactaatagt 34891541  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 130
Target Start/End: Original strand, 31152738 - 31152792
Alignment:
Q  76 atgttgaatgaatgagatggagaagtttcatgttcttaagatgaaaatggtaatt 130  Q
    |||||||||||| || ||| ||||| || ||||| ||||||||||||||||||||    
T  31152738 atgttgaatgaaagaaatgaagaagattgatgtttttaagatgaaaatggtaatt 31152792  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 133
Target Start/End: Original strand, 35574646 - 35574704
Alignment:
Q  75 catgttgaatgaatgagatggagaagtttcatgttcttaagatgaaaatggtaattaat 133  Q
    |||||||||||||||||||| | || ||| ||||||||||||||||||| |||| ||||    
T  35574646 catgttgaatgaatgagatgaaaaaatttgatgttcttaagatgaaaatcgtaactaat 35574704  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 136
Target Start/End: Original strand, 32166641 - 32166702
Alignment:
Q  75 catgttgaatgaatgagatggagaagtttcatgttcttaagatgaaaatggtaattaatagt 136  Q
    |||||||||| || |||||| |||||||| |||||||| ||||||||||| ||||| |||||    
T  32166641 catgttgaataaaggagatgaagaagtttgatgttcttgagatgaaaatgataattgatagt 32166702  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 130
Target Start/End: Original strand, 6630547 - 6630600
Alignment:
Q  77 tgttgaatgaatgagatggagaagtttcatgttcttaagatgaaaatggtaatt 130  Q
    |||| |||||| |||||| |||| ||| ||| ||||||||||||||||||||||    
T  6630547 tgttaaatgaaggagatgaagaaatttaatgatcttaagatgaaaatggtaatt 6630600  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 35574743 - 35574796
Alignment:
Q  5 ttgatgaattaagggtaatttacccctaatgataaataagattcaattttggaa 58  Q
    |||||||||| ||||||||||||| ||||||| || || ||||| |||||||||    
T  35574743 ttgatgaattgagggtaatttaccgctaatgacaactatgattcgattttggaa 35574796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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