View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2745_low_2 (Length: 625)
Name: NF2745_low_2
Description: NF2745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2745_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 203 - 605
Target Start/End: Complemental strand, 8264121 - 8263719
Alignment:
| Q |
203 |
aattataaagattattttatacacacaaccaaacaaacaaatatttacatatctttatcgnnnnnnnnnnnnnnnncatgcaggcatagatagtagctca |
302 |
Q |
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| T |
8264121 |
aattataaagattattttataaacacaaccaaacaaacaaatatttacatatctttatcgtttttcttttatttttcatgcaggcatagatagtagctca |
8264022 |
T |
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| Q |
303 |
tccttcaatcctatatgctttttggagtagtacactaagaacccgcaattgagaaacatagtcattttttaagtgtagtcgctttgatctaagaagagat |
402 |
Q |
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| T |
8264021 |
tccctcaatcctatatgctttttgtagtagtactctaagaacccgcaattgaaaaacatagtcattttttaagtgtaatcgctttgatctaagaagagat |
8263922 |
T |
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| Q |
403 |
cattgttagaagttcaaagtactctatacatcatcttagaagttgaatgcacgaaaaatcaaacaagaaaatgactagttagctaattacatggctattc |
502 |
Q |
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| T |
8263921 |
cattgttagaagttcaaagtactctatacatcaatttagaagttgaatgcacgaaaaatcaaacaagaaaatgactagttagctaattacatggctattc |
8263822 |
T |
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| Q |
503 |
ggctaagaagaaaatttctcacgacgacaacgaagtcaatttttaatgaactgtcgattacaaaggattaacgatgtaaaatatatttactgaaagtgta |
602 |
Q |
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| T |
8263821 |
ggctaagaagaaaatttctcacgacgacaacgaagtcaatttttaatgaattgtcgattacaaaggattaacgatgtaaaatatatttactgaaagtgta |
8263722 |
T |
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| Q |
603 |
tgt |
605 |
Q |
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| T |
8263721 |
tgt |
8263719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 109 - 186
Target Start/End: Complemental strand, 8264268 - 8264191
Alignment:
| Q |
109 |
gaacattgtgcatcacaacattaatgttgataactaatattagccacaatcttatcttatataatgtaatacttatag |
186 |
Q |
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| T |
8264268 |
gaacactgtgcctcacaacattaatgttgataactaatattagccacaatcttatcttatgtaatgtaatacttatag |
8264191 |
T |
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