View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2745_low_3 (Length: 590)
Name: NF2745_low_3
Description: NF2745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2745_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 20 - 580
Target Start/End: Original strand, 41344882 - 41345442
Alignment:
| Q |
20 |
catgcttctcaaacttccatacagagatttcctcgtcgcaacagctacataagatggctccattgaaaattcgacctgttatcggtttttccccatcatg |
119 |
Q |
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| T |
41344882 |
catgcttctcaaacttccatacagagatttcctcgtcgcaacagctacataagatggctccattgaaaattcgacctgttatcggtttttccccatcatg |
41344981 |
T |
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| Q |
120 |
gtaacgcacctgggtcccttcatcaatttccttgcaagctgtcaaccatgctaggatggnnnnnnnataatgttttattgttggttgacgcaataatggt |
219 |
Q |
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| T |
41344982 |
gtaacgcacctgggtcccttcatcaatttccttgcaagctgtcaaccatgctaggatggtttttttattatgttttattgttggttgacgcggtaatggt |
41345081 |
T |
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| Q |
220 |
tcgggaattgatgatgaagttgtttccatcgtcaaactatgttcttgattattatttatttctggaacatcaatatctgttacattcattgatgcattcc |
319 |
Q |
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| T |
41345082 |
tcgggaattgatgatgaagttgtttccatcgtcaaactatgttcctgattattatttatttctggaacatcaatatctgttacattcattgatgcattcc |
41345181 |
T |
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| Q |
320 |
ccgcagttgcgcttggagtttcatgttcctgattatgacttgtttgttgaacattgcttgtttcgttcattgacgatggagctgtttctattggcaaact |
419 |
Q |
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| T |
41345182 |
ccgcagttgcgcttggagtttcatgttcctgattatgacttgtttgttgaacattgcttgtttcgttcattgatgatggagctgtttctattggcaaact |
41345281 |
T |
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| Q |
420 |
ctggtcaggattaatactcgtttccggaacaatggttgctatttcattcactgataatggagttgtttccattaccatattacccatttcggatcttggt |
519 |
Q |
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| T |
41345282 |
ctggtcaggattaatactcgtttccggaacaatggttgctatttcattcactgataatggagttgtttccattatcatattacccatttcggatcttggt |
41345381 |
T |
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| Q |
520 |
ctacgagaagatcgatatcgtggacgacgctgtttttccctttttgcttctaaccattcat |
580 |
Q |
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| T |
41345382 |
ctacgagaagatcgatatcgtggacgacgctgtttttccctttttgcttctaaccattcat |
41345442 |
T |
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