View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2745_low_6 (Length: 389)

Name: NF2745_low_6
Description: NF2745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2745_low_6
NF2745_low_6
[»] chr1 (20 HSPs)
chr1 (1-371)||(6368394-6368776)
chr1 (1-372)||(6421901-6422273)
chr1 (2-151)||(6373519-6373671)
chr1 (5-230)||(6382734-6382959)
chr1 (83-230)||(6360944-6361088)
chr1 (85-214)||(6416295-6416421)
chr1 (96-217)||(6400244-6400362)
chr1 (240-372)||(6381518-6381649)
chr1 (96-215)||(6404868-6404983)
chr1 (1-83)||(6337236-6337318)
chr1 (85-194)||(6391880-6391986)
chr1 (103-214)||(6337056-6337164)
chr1 (2-83)||(6361142-6361223)
chr1 (293-372)||(6360177-6360256)
chr1 (302-373)||(6429063-6429134)
chr1 (2-58)||(6350327-6350383)
chr1 (4-60)||(6405020-6405076)
chr1 (163-218)||(6350118-6350173)
chr1 (4-60)||(6400399-6400455)
chr1 (4-60)||(6416449-6416505)
[»] chr3 (1 HSPs)
chr3 (67-125)||(5335968-5336024)


Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 6368776 - 6368394
Alignment:
Q  1 gattattttaacaaaatatggaacagaggaagaaaatgattgtactatcttttcctcatcatttcttgataa------------ctttgacagtgctgcc 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||    
T  6368776 gattattttaacaaaatatggaacagaggaagaaaatgattgtactatcttttcctcatcatttcttgataattttcttgataactttgacagtgctgcc 6368677  T
Q  89 tctgtgcggaattgaacaattcaatcatgagttttaagaaaaaaggataggctctggcataaaaatataagaaattgaatacaaaatactcattccttga 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6368676 tctgtgcggaattgaacaattcaatcatgagttttaagaaaaaaggataggctctggcataaaaatataagaaattgaatacaaaatactcattccttga 6368577  T
Q  189 caagtatcagtttgcaagggaagatcagatcaattttaataccaaaagttaaagaaattaaagagaaactgagaatcgcaaatggaatgtgagtgtttat 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6368576 caagtatcagtttgcaagggaagatcagatcaattttaataccaaaagttaaagaaattaaagagaaactgagaatcgcaaatggaatgtgagtgtttat 6368477  T
Q  289 ttatgataaatccctactacccaaagagcaatcctctacacagagaaaacaaacaattctctgaccaaacaagacaatgattc 371  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6368476 ttatgataaatccctactacccaaagagcaatcctctacacagagaaaacaaacaattctctgaccaaacaagacaatgattc 6368394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 6422273 - 6421901
Alignment:
Q  1 gattattttaacaaaatatggaacagaggaagaaaatgattgtactatcttttcctcatcatttcttga---taactttgacagtgctgcctctgtgcgg 97  Q
    ||||||||||||||||||||||| ||  || | |||||| ||  ||| ||||| |||||| |||  |||   |||| ||||| |||| |||||||||  |    
T  6422273 gattattttaacaaaatatggaaaagttgaggtaaatgactgggctaactttttctcatcctttgctgacgataaccttgactgtgccgcctctgtg--g 6422176  T
Q  98 aattgaacaattcaatcatgagttttaagaaaaaaggataggctctggcataaaaatataagaaattgaatacaaaatactcattccttgacaagtatca 197  Q
    |||||||||||||||||||||||||||| | ||||||||| |||||||||||||  |||| ||| |||| | |||||||||| ||| |||||||||||||    
T  6422175 aattgaacaattcaatcatgagttttaa-ataaaaggataagctctggcataaa--tatacgaatttgagtgcaaaatactctttctttgacaagtatca 6422079  T
Q  198 gtttgcaa-------gggaagatcagatcaattttaataccaaaagttaaagaaattaaagagaaactgagaatcgcaaatggaatgtgagtgtttattt 290  Q
    |||||| |       ||||||||| ||| | || ||||| || |||      ||||||||||||||| | |||| |||||||||||||||||||||||||    
T  6422078 gtttgctacttgctagggaagatcggatgagttataataacagaagc-----aaattaaagagaaaccgggaattgcaaatggaatgtgagtgtttattt 6421984  T
Q  291 -atgataaatccctactacccaaagagcaatcctctacacagagaaaacaaacaattctctgaccaaacaagacaatgattct 372  Q
     | ||||||||||||| |||||||||||||| |||||||||| ||||| |  ||||||| || |||||||| |||||||||||    
T  6421983 gacgataaatccctacaacccaaagagcaatgctctacacagtgaaaagactcaattctatggccaaacaaaacaatgattct 6421901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 2 - 151
Target Start/End: Complemental strand, 6373671 - 6373519
Alignment:
Q  2 attattttaacaaaatatggaacagaggaagaaaatgattgtactatcttttcctcatcatttcttgataactttgacagtgctgcctctgtgcggaatt 101  Q
    |||||||||||||||||||||| |||||| | || ||||||| ||||||||| |||||| ||||||||| |||||||||||||||||||||||  |||||    
T  6373671 attattttaacaaaatatggaaaagaggaggtaactgattgtgctatctttttctcatcctttcttgatgactttgacagtgctgcctctgtg--gaatt 6373574  T
Q  102 gaacaattcaatcatgagtttt-----aagaaaaaaggataggctctggcataaa 151  Q
    ||||||||||||||||||||||     || ||||||||||||| |||||||||||    
T  6373573 gaacaattcaatcatgagtttttttttaaaaaaaaaggataggttctggcataaa 6373519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 5 - 230
Target Start/End: Complemental strand, 6382959 - 6382734
Alignment:
Q  5 attttaacaaaatatggaacagaggaagaaaatgattgtactatcttttcctcatcatt---tcttgataactttgacagtgctgcctctgtgcggaatt 101  Q
    |||||||||||||| |||| |||||| | ||||||||   ||||||||| |||| |||    |  |||||||||||||||||||||||||||| ||||||    
T  6382959 attttaacaaaataaggaaaagaggaggtaaatgattcggctatctttttctcagcatgcgatgatgataactttgacagtgctgcctctgtgtggaatt 6382860  T
Q  102 gaacaattcaatcatgagttttaagaaaaaaggataggctctggcataaaaatataagaaattgaatacaaaatactcattccttgacaagtatcagttt 201  Q
    ||||| |||||||||||||||||| | ||||  ||  ||| ||||||  ||||||||| | |||||| |||||||||| ||||| |||||||||||||||    
T  6382859 gaacagttcaatcatgagttttaa-ataaaataatgagctttggcat--aaatataaggatttgaatgcaaaatactctttcctagacaagtatcagttt 6382763  T
Q  202 gcaagggaagatcagatcaattttaatac 230  Q
    || | |||||||||||| | |||||||||    
T  6382762 gctatggaagatcagatgagttttaatac 6382734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 83 - 230
Target Start/End: Complemental strand, 6361088 - 6360944
Alignment:
Q  83 gctgcctctgtgcggaattgaacaattcaatcatgagttttaagaaaaaaggataggctctggcataaaaatataagaaattgaatacaaaatactcatt 182  Q
    |||||||||||| ||||||||||| |||||||||||||||||| | ||||||| ||||| |||||||||  |||||| | |||||| |||||||||| ||    
T  6361088 gctgcctctgtgaggaattgaacagttcaatcatgagttttaa-ataaaaggacaggctttggcataaa--tataaggatttgaatgcaaaatactcttt 6360992  T
Q  183 ccttgacaagtatcagtttgcaagggaagatcagatcaattttaatac 230  Q
    ||| ||||||||||||||||| ||||||||||| || | |||||||||    
T  6360991 cctagacaagtatcagtttgctagggaagatcaaatgagttttaatac 6360944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 85 - 214
Target Start/End: Complemental strand, 6416421 - 6416295
Alignment:
Q  85 tgcctctgtgcggaattgaacaattcaatcatgagttttaagaaaaaaggataggctctggcataaaaatataagaaattgaatacaaaatactcattcc 184  Q
    |||||||||  |||||||||||||| ||||||||||||||| | ||||||||| |||||| ||||||  |||||| | |||||| |||||||||| |||     
T  6416421 tgcctctgtaaggaattgaacaatttaatcatgagttttaa-ataaaaggataagctctgacataaa--tataaggatttgaatgcaaaatactctttct 6416325  T
Q  185 ttgacaagtatcagtttgcaagggaagatc 214  Q
    | ||||||||||||||||| ||||||||||    
T  6416324 tagacaagtatcagtttgctagggaagatc 6416295  T

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Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 96 - 217
Target Start/End: Complemental strand, 6400362 - 6400244
Alignment:
Q  96 ggaattgaacaattcaatcatgagttttaagaaaaaaggataggctctggcataaaaatataagaaattgaatacaaaatactcattccttgacaagtat 195  Q
    ||||||||||| |||||||||||||||||| | || |||||| || ||||||||||  |||||| | |||||| |||||||||| || ||||| ||||||    
T  6400362 ggaattgaacagttcaatcatgagttttaa-ataagaggataagccctggcataaa--tataaggatttgaatgcaaaatactcttttcttgaaaagtat 6400266  T
Q  196 cagtttgcaagggaagatcaga 217  Q
    |||||||| |||||||||||||    
T  6400265 cagtttgctagggaagatcaga 6400244  T

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Target: chr1; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 240 - 372
Target Start/End: Complemental strand, 6381649 - 6381518
Alignment:
Q  240 aagaaattaaagagaaactgagaatcgcaaatggaatgtgagtgtttatttatgataaatccctactacccaaagagcaatcctctacacagagaaaaca 339  Q
    ||||||| |||||||| |  |||||  |||||| ||||||||||||||||  |||||||||||||  | | | |||||||| ||||||||||||||||||    
T  6381649 aagaaatcaaagagaatcctagaattacaaatgaaatgtgagtgtttattggtgataaatccctaacaac-acagagcaatgctctacacagagaaaaca 6381551  T
Q  340 aacaattctctgaccaaacaagacaatgattct 372  Q
      ||||||||||||||||||| | |||||||||    
T  6381550 cgcaattctctgaccaaacaaaataatgattct 6381518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 96 - 215
Target Start/End: Complemental strand, 6404983 - 6404868
Alignment:
Q  96 ggaattgaacaattcaatcatgagttttaagaaaaaaggataggctctggcataaaaatataagaaattgaatacaaaatactcattccttgacaagtat 195  Q
    ||||||||||| ||||||||||||||| || ||||  ||||| ||||||||||||   |||||| | |||||| |||||||| | ||||| |||||||||    
T  6404983 ggaattgaacagttcaatcatgagtttaaataaaa--ggataagctctggcataag--tataaggatttgaatgcaaaataccctttcctagacaagtat 6404888  T
Q  196 cagtttgcaagggaagatca 215  Q
    |||||||| |||||||||||    
T  6404887 cagtttgctagggaagatca 6404868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 6337318 - 6337236
Alignment:
Q  1 gattattttaacaaaatatggaacagaggaagaaaatgattgtactatcttttcctcatcatttcttgataactttgacagtg 83  Q
    ||||||||||||||||||||||| |||||| | |||||||||  ||||||||| |||||||| |  |||||||||||| ||||    
T  6337318 gattattttaacaaaatatggaaaagaggacgtaaatgattgggctatctttttctcatcatgtgctgataactttgatagtg 6337236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 194
Target Start/End: Complemental strand, 6391986 - 6391880
Alignment:
Q  85 tgcctctgtgcggaattgaacaattcaatcatgagttttaagaaaaaaggataggctctggcataaaaatataagaaattgaatacaaaatactcattcc 184  Q
    |||||||||| ||||||||||| |||||||||||||||||| | | ||||||| ||||||||||  ||||||||| | || ||| |||||||||| |||     
T  6391986 tgcctctgtgtggaattgaacagttcaatcatgagttttaa-atataaggataagctctggcat--aaatataaggatttaaatgcaaaatactctttcg 6391890  T
Q  185 ttgacaagta 194  Q
    | ||||||||    
T  6391889 tagacaagta 6391880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 103 - 214
Target Start/End: Complemental strand, 6337164 - 6337056
Alignment:
Q  103 aacaattcaatcatgagttttaagaaaaaaggataggctctggcataaaaatataagaaattgaatacaaaatactcattccttgacaagtatcagtttg 202  Q
    ||||||||||||||||||||||| | |||| |||| ||||||| |||||  |||||| | |||||| ||||||||||  | || |||||||||||||||     
T  6337164 aacaattcaatcatgagttttaa-ataaaatgataagctctggaataaa--tataaggatttgaatgcaaaatactctatactagacaagtatcagtttt 6337068  T
Q  203 caagggaagatc 214  Q
    | ||||||||||    
T  6337067 ctagggaagatc 6337056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 6361223 - 6361142
Alignment:
Q  2 attattttaacaaaatatggaacagaggaagaaaatgattgtactatcttttcctcatcatttcttgataactttgacagtg 83  Q
    |||||||||||||||||||||| |||||| | |||||||||  |||||| || |||| ||| |  |||||||||||||||||    
T  6361223 attattttaacaaaatatggaaaagaggaggtaaatgattgggctatctctttctcagcatgtggtgataactttgacagtg 6361142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 293 - 372
Target Start/End: Complemental strand, 6360256 - 6360177
Alignment:
Q  293 gataaatccctactacccaaagagcaatcctctacacagagaaaacaaacaattctctgaccaaacaagacaatgattct 372  Q
    |||||| |||||||||||||| |||||| ||||||| ||||||||||  ||||| | ||||| | ||| |||||||||||    
T  6360256 gataaacccctactacccaaatagcaatgctctacaaagagaaaacacgcaattatttgacctagcaaaacaatgattct 6360177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 302 - 373
Target Start/End: Complemental strand, 6429134 - 6429063
Alignment:
Q  302 ctactacccaaagagcaatcctctacacagagaaaacaaacaattctctgaccaaacaagacaatgattctg 373  Q
    ||||| ||| ||||||||| |||||| || |||||||| ||||||||||| | |||||| ||||||||||||    
T  6429134 ctactgcccgaagagcaatgctctacgcaaagaaaacacacaattctctggcaaaacaaaacaatgattctg 6429063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 6350383 - 6350327
Alignment:
Q  2 attattttaacaaaatatggaacagaggaagaaaatgattgtactatcttttcctca 58  Q
    ||||||||||||||||||||||  ||||| |||||||| ||  ||||||||||||||    
T  6350383 attattttaacaaaatatggaaatgaggaggaaaatgactgggctatcttttcctca 6350327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 6405076 - 6405020
Alignment:
Q  4 tattttaacaaaatatggaacagaggaagaaaatgattgtactatcttttcctcatc 60  Q
    |||||||||||||||||||| ||| |||| |||||||||  ||||||||| ||||||    
T  6405076 tattttaacaaaatatggaaaagaagaagtaaatgattgggctatctttttctcatc 6405020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 163 - 218
Target Start/End: Complemental strand, 6350173 - 6350118
Alignment:
Q  163 ttgaatacaaaatactcattccttgacaagtatcagtttgcaagggaagatcagat 218  Q
    |||||| |||||||||  | ||| ||||||||||||||||| ||||||||||||||    
T  6350173 ttgaatgcaaaatacttttccctagacaagtatcagtttgctagggaagatcagat 6350118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 6400455 - 6400399
Alignment:
Q  4 tattttaacaaaatatggaacagaggaagaaaatgattgtactatcttttcctcatc 60  Q
    |||||||||||||||||||| |||||| | ||||||||   ||||||||| ||||||    
T  6400455 tattttaacaaaatatggaaaagaggaggtaaatgattcggctatctttttctcatc 6400399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 6416505 - 6416449
Alignment:
Q  4 tattttaacaaaatatggaacagaggaagaaaatgattgtactatcttttcctcatc 60  Q
    |||||||||||||||||||| |||||| | |||||||||  || |||||| ||||||    
T  6416505 tattttaacaaaatatggaaaagaggaggtaaatgattgggctgtctttttctcatc 6416449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 67 - 125
Target Start/End: Complemental strand, 5336024 - 5335968
Alignment:
Q  67 tgataactttgacagtgctgcctctgtgcggaattgaacaattcaatcatgagttttaa 125  Q
    ||||||||||| |||||||||||||||  ||||| ||||| |||| |||||||||||||    
T  5336024 tgataactttgtcagtgctgcctctgt--ggaatcgaacagttcactcatgagttttaa 5335968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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