View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2745_low_8 (Length: 238)
Name: NF2745_low_8
Description: NF2745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2745_low_8 |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 28894645 - 28894865
Alignment:
| Q |
18 |
tgaattataagatcatgaagagatttttgaggtgattcaatttgagagaatatggaaactatctctggttcataacttggaccattaagaaactcgagaa |
117 |
Q |
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| T |
28894645 |
tgaattataagatcatgaagagatttttgaggtgattcaatttgagagaatatggaaactatctctggttcataacttggaccattaagaaactcgagaa |
28894744 |
T |
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| Q |
118 |
gatcttcgccatcaatgcgaagtatcacaattggatcacgtttgagtcctgcagccatgcccaacagaatgtctgaaagaacctctttgaactcggtctt |
217 |
Q |
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| T |
28894745 |
gatcttcgccatcaatgcgaagtatcacaattggatcacgtttgagtccagcagccatgcccaacagaatgtctgagagaacctctttgaactcagtctt |
28894844 |
T |
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| Q |
218 |
gctcaccttttcttgctttcc |
238 |
Q |
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| T |
28894845 |
gctcactttttcttgctttcc |
28894865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 89 - 238
Target Start/End: Complemental strand, 55098038 - 55097889
Alignment:
| Q |
89 |
ataacttggaccattaagaaactcgagaagatcttcgccatcaatgcgaagtatcacaattggatcacgtttgagtcctgcagccatgcccaacagaatg |
188 |
Q |
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| T |
55098038 |
ataacttggaccattaacaaactcaagaagatcttccccgtccatgcggagtataacaattgggtctcgcttcaatccagcagccatgcctaatagaatg |
55097939 |
T |
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| Q |
189 |
tctgaaagaacctctttgaactcggtcttgctcaccttttcttgctttcc |
238 |
Q |
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| T |
55097938 |
tctgagagaacctctttgaactcactcttgctcactttttcttgctttcc |
55097889 |
T |
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