View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2746_high_1 (Length: 905)
Name: NF2746_high_1
Description: NF2746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2746_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 429; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 19 - 586
Target Start/End: Complemental strand, 3221888 - 3221320
Alignment:
| Q |
19 |
cctactagtgagatatattagcttccatgcagcaacaattatgttaaaacttttacccggacccggttcaataattttcaatggttggtggaatttaaag |
118 |
Q |
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| T |
3221888 |
cctactagtgagatatattagcttccatgcagcaacaattatgttaaaacttttacccggacccggttcaataattttcaatggttggtggaatttaaag |
3221789 |
T |
|
| Q |
119 |
gaaattttaaaacatggatcctttttgtttgaatatgttgtctataattcgttgatcaaaactaatgaaaaataaaattgtgttggtgaactt-gaagtt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3221788 |
gaaattttaaaacatggatcctttttgtttgaatatgtagtctataattcgttgatcaaaactaatgaaaaataaaattgtgttggtgaacttggaagtt |
3221689 |
T |
|
| Q |
218 |
aaagctttagtaatctaacccttagatggacgggcagtgcatatcccttacatttgtcgtaattaaatcaaatttttggtataattttccccattcatac |
317 |
Q |
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| T |
3221688 |
aaagctttagtaacctaatccttagatggacggacattgcatatcccttacatttgtcataattaaatcaaatttttggtataattttccccattcatgc |
3221589 |
T |
|
| Q |
318 |
tattctaa-ttttattatttcaattcatgatgcatcataaacttttcaactcttaaattgtagtgctatgttatatacgataag-nnnnnnnnnctagct |
415 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
3221588 |
tattctaatttttattatttcaattcatgatgcatcataaacttttcaactcttaaattgtagtgctctgttatatacgataagataaaaaaaattagct |
3221489 |
T |
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| Q |
416 |
agagaaatgatgagcgattcaaactgatcaaatccaatccaaatgacgagtgtttcaaatcaaagaattatgtaactaactagagagagaatctaaaaga |
515 |
Q |
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| T |
3221488 |
agagaaatgacgagcgttttaaactgatcaaatccaattcaaatgacgagtgtttcaaactaaagaattatgtaagtaactagagagagaatgtaaaaga |
3221389 |
T |
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| Q |
516 |
tgcaactaaattatatttctatgtatattgaattacaattcatgaaggtctcttgcatatatagcactgag |
586 |
Q |
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| T |
3221388 |
tgcaacttaattatatttctatg--tattgaattacaattgatgaaggtctcttgcttatatagcactgag |
3221320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 309; E-Value: 1e-173
Query Start/End: Original strand, 477 - 868
Target Start/End: Complemental strand, 3214720 - 3214331
Alignment:
| Q |
477 |
aaagaattatgtaactaactagagagagaatctaaaagatgcaactaaattatatttctatgtatattgaattacaattcatgaaggtctcttgcatata |
576 |
Q |
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| T |
3214720 |
aaagaattttgtaactaactagagagagaatgtaaaagatgcaactgaattatatttctatgtat--tgaattacaattgatgaaggtctcttgcttata |
3214623 |
T |
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| Q |
577 |
tagcactgagatccttacctactatagcaggttacaatagtgacatgtgtcagttagttacagttgcatcttaatggatctaaataagcctaatagttct |
676 |
Q |
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| T |
3214622 |
tagcactgagatccttacctgctatagcaggttacaatagtgacatgtgttagttagttacaactgtatcttaatggatctaactaagcctaatacttct |
3214523 |
T |
|
| Q |
677 |
tatactctaatacaaactgatcaaatccaatccaacaaaaaagcgggtctgaacaaaaggcaatgatctacctactatattatggacacgctctagaggc |
776 |
Q |
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| | |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3214522 |
tttgctctaatacaaactaatcaaatccaatccaacaagaaagcgggtctgaacaaaaggcaatgatctaccgactatattatggacacgctctagaggc |
3214423 |
T |
|
| Q |
777 |
acatgtaagcaagtcttgagacggaatcaggaccgtatgatgataatcacatcatgatttataagcaattgcctcgaatgatagttgctcaa |
868 |
Q |
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| T |
3214422 |
acatgtaagcaagtcttgagacggaatcaggaccgtatgatgataatcacatcatgatttataagcaattgcctcgaatgatagttgttcaa |
3214331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 580 - 688
Target Start/End: Complemental strand, 3220048 - 3219940
Alignment:
| Q |
580 |
cactgagatccttacctactatagcaggttacaatagtgacatgtgtcagttagttacagttgcatcttaatggatctaaataagcctaatagttcttat |
679 |
Q |
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||||||||||||||||| |||||||||||| |||||||||||||||| ||||| ||||||||| |||||||| ||||||| ||||||||||||||||||| |
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| T |
3220048 |
cactgagatccttacctgctatagcaggttgcaatagtgacatgtgttagttaattacagttgtatcttaatagatctaactaagcctaatagttcttat |
3219949 |
T |
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| Q |
680 |
actctaata |
688 |
Q |
| |
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||||||||| |
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| T |
3219948 |
actctaata |
3219940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 865 - 895
Target Start/End: Complemental strand, 3214269 - 3214239
Alignment:
| Q |
865 |
tcaaaatacatacacattccctacacttcat |
895 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
3214269 |
tcaaaatacatacacattccctacacttcat |
3214239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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