View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2746_high_10 (Length: 412)
Name: NF2746_high_10
Description: NF2746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2746_high_10 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 15 - 394
Target Start/End: Original strand, 40735500 - 40735875
Alignment:
| Q |
15 |
cttattttatatagcaaagtacatgtgatatatcagtgacat--ctcatacctaatttaaaataatgagatgttcttccgcccatttatattatatagca |
112 |
Q |
| |
|
||||| |||||| |||||||||| |||||||| ||||| || |||||||||||||||||||||||||||||| ||| ||||||||||||| | |
|
|
| T |
40735500 |
cttatattatatgtcaaagtacatctgatatataagtgaaatgactcatacctaatttaaaataatgagatgttggtcc------ttatattatatagga |
40735593 |
T |
|
| Q |
113 |
aactacatgcgcatgtgatatatctgtgagatgattcatctctactttaagatgatgtgatgttgatcagcccacttatatgattgctctttaagttaat |
212 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||| |||| |||| |||||||||||||||||||||||| ||| ||||||||||| |||| |||||||| |
|
|
| T |
40735594 |
aagtacatgcg-atgtgatatatctgtgagatgactcatatctaatttaagatgatgtgatgttgatcaatccatttatatgattgttctt-aagttaat |
40735691 |
T |
|
| Q |
213 |
atgatgatccgcacctcactcatcatggtgttaaatt--gggagcagccttaccacaagaaatgcaagtatgccaacttgtgtgattttacttgtcttaa |
310 |
Q |
| |
|
| || ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40735692 |
acgaagatccacacctcactcatcatggtgttaaattatgggagcagccttaccacaagaaatgcaagtatgccaacttgtgtgattttacttgtcttaa |
40735791 |
T |
|
| Q |
311 |
attttattttcaactcatcatatattcctatcttcatatgttactatgcatggttacactgactgattattcatgtgtcgttct |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
40735792 |
attttattttcaactcatcatatattcctatcttcatatgttactatgcatagttacactgactgattattcatgtgtcgttct |
40735875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 40735416 - 40735475
Alignment:
| Q |
15 |
cttattttatatagcaaagtacatgtgatatatcagtgacat--ctcatacctaatttaa |
72 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||| ||||| || |||| ||||||||||| |
|
|
| T |
40735416 |
cttatattatacagcaaagtacatgtgatatataagtgagatgactcagacctaatttaa |
40735475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University