View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2746_high_12 (Length: 403)

Name: NF2746_high_12
Description: NF2746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2746_high_12
NF2746_high_12
[»] chr7 (7 HSPs)
chr7 (87-387)||(25418575-25418875)
chr7 (87-387)||(47232829-47233128)
chr7 (87-195)||(39066113-39066221)
chr7 (176-374)||(47932323-47932531)
chr7 (332-368)||(25418859-25418895)
chr7 (332-368)||(47233112-47233148)
chr7 (332-368)||(44394479-44394515)
[»] chr6 (6 HSPs)
chr6 (87-387)||(13432453-13432753)
chr6 (98-387)||(18883386-18883685)
chr6 (212-367)||(26720500-26720663)
chr6 (332-368)||(13432737-13432773)
chr6 (332-368)||(18883366-18883402)
chr6 (335-368)||(16711407-16711440)
[»] chr4 (14 HSPs)
chr4 (87-387)||(2504000-2504300)
chr4 (87-385)||(46093142-46093439)
chr4 (88-368)||(53829550-53829830)
chr4 (87-368)||(21631814-21632095)
chr4 (87-387)||(34736824-34737117)
chr4 (87-368)||(21803712-21803985)
chr4 (100-387)||(20037085-20037380)
chr4 (183-372)||(2499847-2500045)
chr4 (178-374)||(43944131-43944337)
chr4 (100-143)||(2499804-2499847)
chr4 (332-368)||(2504284-2504320)
chr4 (332-368)||(5431528-5431564)
chr4 (332-368)||(46093120-46093156)
chr4 (332-362)||(34737101-34737131)
[»] chr3 (8 HSPs)
chr3 (87-387)||(52350568-52350868)
chr3 (87-387)||(48267079-48267379)
chr3 (89-387)||(35871177-35871475)
chr3 (176-374)||(54945125-54945333)
chr3 (179-374)||(5883768-5883973)
chr3 (332-368)||(35871157-35871193)
chr3 (332-368)||(48267059-48267095)
chr3 (332-368)||(52350548-52350584)
[»] chr2 (11 HSPs)
chr2 (87-387)||(7573091-7573391)
chr2 (87-387)||(16667686-16667986)
chr2 (87-387)||(41645707-41646007)
chr2 (89-387)||(43564953-43565249)
chr2 (89-387)||(29456162-29456457)
chr2 (332-368)||(7573375-7573411)
chr2 (332-368)||(16667970-16668006)
chr2 (332-366)||(29456144-29456178)
chr2 (332-366)||(43564935-43564969)
chr2 (332-368)||(5968165-5968201)
chr2 (332-366)||(41645991-41646025)
[»] chr1 (8 HSPs)
chr1 (87-387)||(13787071-13787371)
chr1 (87-387)||(25806771-25807071)
chr1 (87-387)||(22911655-22911955)
chr1 (98-387)||(39624275-39624574)
chr1 (332-368)||(13787051-13787087)
chr1 (332-368)||(25807055-25807091)
chr1 (332-368)||(22911939-22911975)
chr1 (332-368)||(39624255-39624291)
[»] chr8 (8 HSPs)
chr8 (87-387)||(28843757-28844057)
chr8 (98-381)||(918005-918288)
chr8 (87-368)||(10187167-10187448)
chr8 (87-368)||(4139097-4139378)
chr8 (332-368)||(28843737-28843773)
chr8 (332-368)||(11427456-11427492)
chr8 (332-368)||(918278-918314)
chr8 (332-368)||(20172768-20172804)
[»] chr5 (6 HSPs)
chr5 (87-385)||(36991885-36992182)
chr5 (87-387)||(21604134-21604436)
chr5 (87-387)||(37300919-37301219)
chr5 (332-368)||(21604420-21604456)
chr5 (332-368)||(36991863-36991899)
chr5 (332-362)||(37301203-37301233)
[»] scaffold0182 (1 HSPs)
scaffold0182 (176-374)||(8223-8430)


Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 87 - 387
Target Start/End: Original strand, 25418575 - 25418875
Alignment:
Q  87 ggcaataatgccatttaattatccttaaaataaagtaataataaaacttccccaaaagaatgtgagtatagttagacaatttcataagatgcacccaaat 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25418575 ggcaataatgccatttaattatccttaaaataaagtaataataaaacttccccaaaagaatgtgagtatagttagacaatttcataagatgcacccaaat 25418674  T
Q  187 ttactcttaattgtaggaaactcaattgatggaaagtatgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacataatt 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25418675 ttactcttaattgtaggaaactcaattgatggaaagtatgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacataatt 25418774  T
Q  287 ttgactctccaatttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctaggccttgaatagatgtgtgc 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25418775 ttgactctccaatttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctaggccttgaatagatgtgtgc 25418874  T
Q  387 t 387  Q
    |    
T  25418875 t 25418875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 87 - 387
Target Start/End: Original strand, 47232829 - 47233128
Alignment:
Q  87 ggcaataatgccatttaattatccttaaaataaagtaataataaaacttccccaaaagaatgtgagtatagttagacaatttcataagatgcacccaaat 186  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47232829 ggcaataatgtcatttaattatccttaaaataaagtaataataaaacttccccaaaagaatgtgagtatagttagacaatttcataagatgcacccaaat 47232928  T
Q  187 ttactcttaattgtaggaaactcaattgatggaaagtatgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacataatt 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||    
T  47232929 ttactcttaattgtaggaaactcaattgatggaaagtatgaaggtcaccaaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacatgatt 47233028  T
Q  287 ttgactctccaatttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctaggccttgaatagatgtgtgc 386  Q
    |||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47233029 ttgactctccaa-ttcacgaaggtcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctaggccttgaatagatgtgtgc 47233127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 87 - 195
Target Start/End: Original strand, 39066113 - 39066221
Alignment:
Q  87 ggcaataatgccatttaattatccttaaaataaagtaataataaaacttccccaaaagaatgtgagtatagttagacaatttcataagatgcacccaaat 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39066113 ggcaataatgccatttaattatccttaaaataaagtaataataaaacttccccaaaagaatgtgagtatagttagacaatttcataagatgcacccaaat 39066212  T
Q  187 ttactctta 195  Q
    |||||||||    
T  39066213 ttactctta 39066221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 176 - 374
Target Start/End: Original strand, 47932323 - 47932531
Alignment:
Q  176 tgcacccaaatttactcttaattgtaggaaactcaattgatggaaagtatgaaggtcagccaattccatgatcaaaggttaaatttccatgt-------- 267  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||  |||||||||| |||| ||||||||||||||||            
T  47932323 tgcacccaaatttactcttaattttaagaaactcaattgatggaaagtatgaatgtcaatcaattccatggtcaagggttaaatttccatgttgccgcgt 47932422  T
Q  268 --aaatcatcaaaacataattttgactctccaatttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacct 365  Q
      ||||||||||||||| | |||| ||||| |||||||  |||||||||| | |||||||||| |||||| ||||| ||||||||||| ||||||||||     
T  47932423 tcaaatcatcaaaacatgactttgtctctctaatttcagaaagatcaagagcgttccattagagttttgagtagatatgtgcttctacgattagttaccg 47932522  T
Q  366 aggccttga 374  Q
    |||| ||||    
T  47932523 aggcattga 47932531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 332 - 368
Target Start/End: Original strand, 25418859 - 25418895
Alignment:
Q  332 ttgaatagatgtgtgcttctacaattagttacctagg 368  Q
    |||||||||||||||||||||||||||||||||||||    
T  25418859 ttgaatagatgtgtgcttctacaattagttacctagg 25418895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 368
Target Start/End: Original strand, 47233112 - 47233148
Alignment:
Q  332 ttgaatagatgtgtgcttctacaattagttacctagg 368  Q
    ||||||||||||||||||| |||||||||||||||||    
T  47233112 ttgaatagatgtgtgcttccacaattagttacctagg 47233148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 368
Target Start/End: Complemental strand, 44394515 - 44394479
Alignment:
Q  332 ttgaatagatgtgtgcttctacaattagttacctagg 368  Q
    |||||||||||||| |||||||||||||||| |||||    
T  44394515 ttgaatagatgtgtacttctacaattagttatctagg 44394479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 301; Significance: 1e-169; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 87 - 387
Target Start/End: Original strand, 13432453 - 13432753
Alignment:
Q  87 ggcaataatgccatttaattatccttaaaataaagtaataataaaacttccccaaaagaatgtgagtatagttagacaatttcataagatgcacccaaat 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13432453 ggcaataatgccatttaattatccttaaaataaagtaataataaaacttccccaaaagaatgtgagtatagttagacaatttcataagatgcacccaaat 13432552  T
Q  187 ttactcttaattgtaggaaactcaattgatggaaagtatgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacataatt 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13432553 ttactcttaattgtaggaaactcaattgatggaaagtatgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacataatt 13432652  T
Q  287 ttgactctccaatttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctaggccttgaatagatgtgtgc 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13432653 ttgactctccaatttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctaggccttgaatagatgtgtgc 13432752  T
Q  387 t 387  Q
    |    
T  13432753 t 13432753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 98 - 387
Target Start/End: Complemental strand, 18883685 - 18883386
Alignment:
Q  98 catttaattatccttaaaataaagtaataataaaacttccccaaaagaatgtgagtatagttagacaatttcataagatgcacccaaatttactcttaat 197  Q
    |||||||||||| ||||||||||||| | |||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||| |||||    
T  18883685 catttaattatctttaaaataaagtattcataaaacttccccaaaagaatgtgggtatagttagacaattccataagctgcacccaaatttacttttaat 18883586  T
Q  198 tgtaggaaactcaattgatggaaagtatgaaggtcagccaattccatgatcaaaggttaaatttccatgt----------aaatcatcaaaacataattt 287  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||  | |  | ||||||||||||||||          ||||||||||||||| ||||    
T  18883585 tgtaggaaactcagttgatggaaagtatgaaggtcaaccaattcctaggtatagggttaaatttccatgttggtgcgttcaaatcatcaaaacatgattt 18883486  T
Q  288 tgactctccaatttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctaggccttgaatagatgtgtgct 387  Q
    || ||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  18883485 tgtctctccaatttcacgaagatcaagaacatgccattaaaattttgaatagatgtgtgcttctacaattagttatgtaggccttgaatagatgtgtgct 18883386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 212 - 367
Target Start/End: Original strand, 26720500 - 26720663
Alignment:
Q  212 ttgatggaaagtatgaaggtcagccaattccatgatcaaaggttaaatttccatgt----------aaatcatcaaaacataattttgactctccaattt 301  Q
    ||||||||||||||||| ||||| ||||| |||| |||| |||||||||| ||| |          ||||||||||||||| | | |  ||||| |||||    
T  26720500 ttgatggaaagtatgaatgtcagtcaatttcatggtcaagggttaaattttcatattcctacatttaaatcatcaaaacatgaatgt--ctctctaattt 26720597  T
Q  302 catgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctag 367  Q
    ||  |||||||||| |||||||||||| |||||  |||||||||||||||||||||||||||||||    
T  26720598 cagaaagatcaagagcattccattagagttttgtgtagatgtgtgcttctacaattagttacctag 26720663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 332 - 368
Target Start/End: Original strand, 13432737 - 13432773
Alignment:
Q  332 ttgaatagatgtgtgcttctacaattagttacctagg 368  Q
    |||||||||||||||||||||||||||||||||||||    
T  13432737 ttgaatagatgtgtgcttctacaattagttacctagg 13432773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 332 - 368
Target Start/End: Complemental strand, 18883402 - 18883366
Alignment:
Q  332 ttgaatagatgtgtgcttctacaattagttacctagg 368  Q
    |||||||||||||||||||||||||||||||||||||    
T  18883402 ttgaatagatgtgtgcttctacaattagttacctagg 18883366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 335 - 368
Target Start/End: Original strand, 16711407 - 16711440
Alignment:
Q  335 aatagatgtgtgcttctacaattagttacctagg 368  Q
    ||||||||||||||||||||||||||||||||||    
T  16711407 aatagatgtgtgcttctacaattagttacctagg 16711440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 87 - 387
Target Start/End: Original strand, 2504000 - 2504300
Alignment:
Q  87 ggcaataatgccatttaattatccttaaaataaagtaataataaaacttccccaaaagaatgtgagtatagttagacaatttcataagatgcacccaaat 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2504000 ggcaataatgccatttaattatccttaaaataaagtaataataaaacttccccaaaagaatgtgagtatagttagacaatttcataagatgcacccaaat 2504099  T
Q  187 ttactcttaattgtaggaaactcaattgatggaaagtatgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacataatt 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2504100 ttactcttaattgtaggaaactcaattgatggaaagtatgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacataatt 2504199  T
Q  287 ttgactctccaatttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctaggccttgaatagatgtgtgc 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2504200 ttgactctccaatttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctaggccttgaatagatgtgtgc 2504299  T
Q  387 t 387  Q
    |    
T  2504300 t 2504300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 87 - 385
Target Start/End: Complemental strand, 46093439 - 46093142
Alignment:
Q  87 ggcaataatgccatttaattatccttaaaataaagtaataataaaacttccccaaaagaatgtgagtatagttagacaatttcataagatgcacccaaat 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  46093439 ggcaataatgccatttaattatccttaaaataaagtaataataaaacttccctaaaagaatgtgagtatagttagacaatttcataagatgcacccaaat 46093340  T
Q  187 ttactcttaattgtaggaaactcaattgatggaaagtatgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacataatt 286  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  46093339 ttactctta-ttgtaggaaactcaattgatggaaagtatgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacatgatt 46093241  T
Q  287 ttgactctccaatttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctaggccttgaatagatgtgtg 385  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  46093240 ttgactctccaatttcatgaagatcaagaacattccattaaaattttgaatagatgagtgcttctacaattagttacctaggccttgaatagatgtgtg 46093142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 88 - 368
Target Start/End: Original strand, 53829550 - 53829830
Alignment:
Q  88 gcaataatgccatttaattatccttaaaataaagtaataataaaacttccccaaaagaatgtgagtatagttagacaatttcataagatgcacccaaatt 187  Q
    ||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53829550 gcaataatgtcatttaagtatccttaaaataaagtagtaataaaacttccccaaaagaatgtgagtatagttagacaatttcataagatgcacccaaatt 53829649  T
Q  188 tactcttaattgtaggaaactcaattgatggaaagtatgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacataattt 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||| ||||    
T  53829650 tactcttaattgtaggaaactcaattgatggaaagtatgaaggtcaaccaatttcatgatcaaaggttaaatttccatgtaaatcatcgaaacatgattt 53829749  T
Q  288 tgactctccaatttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctagg 368  Q
    ||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  53829750 tgaatctccaatttcacgaagatcaagaacattcctttagaattttgaatagatgtgtgcttctacaattagttacctagg 53829830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 87 - 368
Target Start/End: Original strand, 21631814 - 21632095
Alignment:
Q  87 ggcaataatgccatttaattatccttaaaataaagtaataataaaacttccccaaaagaatgtgagtatagttagacaatttcataagatgcacccaaat 186  Q
    |||||||| | |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  21631814 ggcaataaagtcatttaattatccttaaaataatgtaataataaaacttcctcaaaagaatgtgagtatagttagacaatttcatcagatgcacccaaat 21631913  T
Q  187 ttactcttaattgtaggaaactcaattgatggaaagtatgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacataatt 286  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||    
T  21631914 ttactcttagttgtaggaaactcaattgatggaaagtatgaaggtcagccaattccatggtcaagggttaaatttccatgtaaatcatcaaaacatgatt 21632013  T
Q  287 ttgactctccaatttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctagg 368  Q
    |||||||| |||||||| |||||||||| ||||||||||||||||||||| | | ||||||||||||||||| |||||||||    
T  21632014 ttgactcttcaatttcacgaagatcaagcacattccattagaattttgaaaaaaagtgtgcttctacaattatttacctagg 21632095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 87 - 387
Target Start/End: Original strand, 34736824 - 34737117
Alignment:
Q  87 ggcaataatgccatttaattatccttaaaataaagtaataataaaacttccccaaaagaatgtgagtatagttagacaatttcataagatgcacccaaat 186  Q
    |||||||| | |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  34736824 ggcaataaagtcatttaattatcctgaaaataaattaataataaaacttccccaaaagaatgtgagtatagttagacaatttcataagatgcactcaaat 34736923  T
Q  187 ttactcttaattgtaggaaactcaattgatggaaagtatgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacataatt 286  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||  | |||      | ||||    
T  34736924 ttactcttaattgtagaaaactcaattgatggaaagtatgaaggtcagccaattccatggtcaaaagttaaatttccatgt--accat-----tagaatt 34737016  T
Q  287 ttgactctccaatttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctaggccttgaatagatgtgtgc 386  Q
    |||| |||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34737017 ttgaatctccaatttcacgaagatcaaaaacataccattagaattttgaatagatgtgtgcttctacaattagttacctaggccttgaatagatgtgtgc 34737116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 87 - 368
Target Start/End: Complemental strand, 21803985 - 21803712
Alignment:
Q  87 ggcaataatgccatttaattatccttaaaataaagtaataataaaacttccccaaaagaatgtgagtatagttagacaatttcataagatgcacccaaat 186  Q
    |||||||| | |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  21803985 ggcaataaagtcatttaattatccttaaaataatgtaataataaaacttcctcaaaagaatgtgagtatagttagacaatttcatcagatgcatccaaat 21803886  T
Q  187 ttactcttaattgtaggaaactcaattgatggaaagtatgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacataatt 286  Q
    ||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||        |||||||||||||||||||||||||||||| |||    
T  21803885 ttactcttagttgtaggaaactcaattaatggaaagtattaaggtcagccaattccat--------gttaaatttccatgtaaatcatcaaaacatgatt 21803794  T
Q  287 ttgactctccaatttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctagg 368  Q
    |||||||| |||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||    
T  21803793 ttgactcttcaatttcacgaagatctagaacattccattagaattttgaaaagatgtgtgcttctacaattatttacgtagg 21803712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 100 - 387
Target Start/End: Complemental strand, 20037380 - 20037085
Alignment:
Q  100 tttaattatccttaaaataaagtaataataaaacttccccaaaagaatgtgagtatagttagacaatttcataagatgcacccaaatttactcttaattg 199  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| || |||| |||||||||||||||||||    
T  20037380 tttaattatccttaaaataaagtaataataaaacttgcccaaaagaatgtgagtatagttagacaattccatgagctgcatccaaatttactcttaattg 20037281  T
Q  200 taggaaactcaattgatggaaagtatgaaggtcagccaattccatgatcaaaggttaaatttccatg----------taaatcatcaaaacataattttg 289  Q
    |||||||||||||||||||||||||| ||| |||||||||| |||| |||| ||||||||| |||||           ||||||||||||||| ||||||    
T  20037280 taggaaactcaattgatggaaagtataaagatcagccaatttcatggtcaagggttaaattcccatgatgttgcgttcaaatcatcaaaacatgattttg 20037181  T
Q  290 actctccaatttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctaggccttgaatagatgtgtgct 387  Q
      |||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||    
T  20037180 --tctccaatttcacgaagatcaagaaagttccattagaattttgaatagatgtgtgcttctacaattagttacctaggcattgaataggcgtgtgct 20037085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 183 - 372
Target Start/End: Original strand, 2499847 - 2500045
Alignment:
Q  183 aaatttactcttaattgtaggaaactcaattgatggaaagtatgaaggtcagccaattccatgatcaaaggttaaatttccatgta----------aatc 272  Q
    |||||| | ||||||||| |||| ||||||||||| ||||||||||| || |||||||||||| |||| || |||||||||||||           ||||    
T  2499847 aaatttccacttaattgttggaa-ctcaattgatgaaaagtatgaagatcggccaattccatggtcaagggctaaatttccatgtcgttgccttctaatc 2499945  T
Q  273 atcaaaacataattttgactctccaatttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctaggcctt 372  Q
    |||||||||| ||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2499946 atcaaaacatgattttgtttctccaatttcacgaagatcaagaacattccattagaattttgaatagatgtctgcttctacaattagttacctaggcctt 2500045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 178 - 374
Target Start/End: Complemental strand, 43944337 - 43944131
Alignment:
Q  178 cacccaaatttactcttaattgtaggaaactcaattgatggaaagtatgaaggtcagccaattccatgatcaaaggttaaatttccatgt---------- 267  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||| ||||  |||||||||| |||| ||||||||||||||||              
T  43944337 cacccaaatttactcttaattttaagaaactcaattgatggaaagtatgaatgtcaatcaattccatggtcaagggttaaatttccatgttgccgcgttc 43944238  T
Q  268 aaatcatcaaaacataattttgactctccaatttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctag 367  Q
    ||||||||||||| | | |||| ||||| |||||||  |||||||||| | |||||||||| |||||| ||||| | | |||||||||||||||||| ||    
T  43944237 aaatcatcaaaacttgactttgtctctctaatttcagaaagatcaagagcgttccattagagttttgagtagatatctccttctacaattagttaccgag 43944138  T
Q  368 gccttga 374  Q
    || ||||    
T  43944137 gcattga 43944131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 100 - 143
Target Start/End: Original strand, 2499804 - 2499847
Alignment:
Q  100 tttaattatccttaaaataaagtaataataaaacttccccaaaa 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  2499804 tttaattatccttaaaataaagtaataataaaacttccccaaaa 2499847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 332 - 368
Target Start/End: Original strand, 2504284 - 2504320
Alignment:
Q  332 ttgaatagatgtgtgcttctacaattagttacctagg 368  Q
    |||||||||||||||||||||||||||||||||||||    
T  2504284 ttgaatagatgtgtgcttctacaattagttacctagg 2504320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 368
Target Start/End: Complemental strand, 5431564 - 5431528
Alignment:
Q  332 ttgaatagatgtgtgcttctacaattagttacctagg 368  Q
    |||||||||||||| ||||||||||||||||||||||    
T  5431564 ttgaatagatgtgtacttctacaattagttacctagg 5431528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 368
Target Start/End: Complemental strand, 46093156 - 46093120
Alignment:
Q  332 ttgaatagatgtgtgcttctacaattagttacctagg 368  Q
    ||||||||||||||| |||||||||||||||||||||    
T  46093156 ttgaatagatgtgtgtttctacaattagttacctagg 46093120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 362
Target Start/End: Original strand, 34737101 - 34737131
Alignment:
Q  332 ttgaatagatgtgtgcttctacaattagtta 362  Q
    |||||||||||||||||||||||||||||||    
T  34737101 ttgaatagatgtgtgcttctacaattagtta 34737131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 87 - 387
Target Start/End: Complemental strand, 52350868 - 52350568
Alignment:
Q  87 ggcaataatgccatttaattatccttaaaataaagtaataataaaacttccccaaaagaatgtgagtatagttagacaatttcataagatgcacccaaat 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52350868 ggcaataatgccatttaattatccttaaaataaagtaataataaaacttccccaaaagaatgtgagtatagttagacaatttcataagatgcacccaaat 52350769  T
Q  187 ttactcttaattgtaggaaactcaattgatggaaagtatgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacataatt 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52350768 ttactcttaattgtaggaaactcaattgatggaaagtatgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacataatt 52350669  T
Q  287 ttgactctccaatttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctaggccttgaatagatgtgtgc 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52350668 ttgactctccaatttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctaggccttgaatagatgtgtgc 52350569  T
Q  387 t 387  Q
    |    
T  52350568 t 52350568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 87 - 387
Target Start/End: Complemental strand, 48267379 - 48267079
Alignment:
Q  87 ggcaataatgccatttaattatccttaaaataaagtaataataaaacttccccaaaagaatgtgagtatagttagacaatttcataagatgcacccaaat 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48267379 ggcaataatgccatttaattatccttaaaataaagtaataataaaacttccccaaaagaatgtgagtatagttagacaatttcataagatgcacccaaat 48267280  T
Q  187 ttactcttaattgtaggaaactcaattgatggaaagtatgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacataatt 286  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  48267279 ttactcttaattgtaggaaactcaattgatggaaagtatgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacatgatt 48267180  T
Q  287 ttgactctccaatttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctaggccttgaatagatgtgtgc 386  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48267179 ttgactctccaatttcacgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctaggccttgaatagatgtgtgc 48267080  T
Q  387 t 387  Q
    |    
T  48267079 t 48267079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 89 - 387
Target Start/End: Complemental strand, 35871475 - 35871177
Alignment:
Q  89 caataatgccatttaattatccttaaaataaagtaataataaaacttccccaaaagaatgtgagtatagttagacaatttcataagatgcacccaaattt 188  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  35871475 caataatgccatttaattatccttaaaataaagtaataataaaacttccccaaaagaatgtgagtatagttagacaatttcataagatgcatccaaattt 35871376  T
Q  189 actcttaattgtaggaaactcaattgatggaaagtatgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacataatttt 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  35871375 actcttaattgtaggaaactcaattgatggaaagtatgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacatgatttt 35871276  T
Q  289 gactctccaatttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctaggccttgaatagatgtgtgct 387  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35871275 gactctccaatttcacgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctaggccttgaatagatgtgtgct 35871177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 176 - 374
Target Start/End: Original strand, 54945125 - 54945333
Alignment:
Q  176 tgcacccaaatttactcttaattgtaggaaactcaattgatggaaagtatgaaggtcagccaattccatgatcaaaggttaaatttccatgt-------- 267  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||  |||||||||| |||| ||||||||||||||||            
T  54945125 tgcacccaaatttactcttaattttaagaaactcaattgatggaaagtatgaatgtcaatcaattccatggtcaagggttaaatttccatgttgccgcgt 54945224  T
Q  268 --aaatcatcaaaacataattttgactctccaatttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacct 365  Q
      ||||||||||||||| | |||| ||||| |||||||  |||||||||| | |||||||||| |||||| ||||| ||||||||||| ||||||||||     
T  54945225 tcaaatcatcaaaacatgactttgtctctctaatttcagaaagatcaagagcgttccattagagttttgagtagatatgtgcttctacgattagttaccg 54945324  T
Q  366 aggccttga 374  Q
    |||| ||||    
T  54945325 aggcattga 54945333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 179 - 374
Target Start/End: Original strand, 5883768 - 5883973
Alignment:
Q  179 acccaaatttactcttaattgtaggaaactcaattgatggaaagtatgaaggtcagccaattccatgatcaaaggttaaatttccatgt----------a 268  Q
    ||||||||||||| |||||| || |||||||||||||||||||||||||| ||||  |||||||||  |||| |||||||||||| |||          |    
T  5883768 acccaaatttacttttaattttaagaaactcaattgatggaaagtatgaatgtcaatcaattccatagtcaagggttaaatttccttgttgccgcgttca 5883867  T
Q  269 aatcatcaaaacataattttgactctccaatttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctagg 368  Q
    |||||||||||||| | |||| ||||| |||||||  |||||||||| | || ||||||| |||||| ||||| |||| |||||| |||||||||| |||    
T  5883868 aatcatcaaaacatgactttgtctctctaatttcagaaagatcaagagcgtttcattagagttttgagtagatatgtgattctacgattagttaccgagg 5883967  T
Q  369 ccttga 374  Q
    | ||||    
T  5883968 cattga 5883973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 332 - 368
Target Start/End: Complemental strand, 35871193 - 35871157
Alignment:
Q  332 ttgaatagatgtgtgcttctacaattagttacctagg 368  Q
    |||||||||||||||||||||||||||||||||||||    
T  35871193 ttgaatagatgtgtgcttctacaattagttacctagg 35871157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 332 - 368
Target Start/End: Complemental strand, 48267095 - 48267059
Alignment:
Q  332 ttgaatagatgtgtgcttctacaattagttacctagg 368  Q
    |||||||||||||||||||||||||||||||||||||    
T  48267095 ttgaatagatgtgtgcttctacaattagttacctagg 48267059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 332 - 368
Target Start/End: Complemental strand, 52350584 - 52350548
Alignment:
Q  332 ttgaatagatgtgtgcttctacaattagttacctagg 368  Q
    |||||||||||||||||||||||||||||||||||||    
T  52350584 ttgaatagatgtgtgcttctacaattagttacctagg 52350548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 87 - 387
Target Start/End: Original strand, 7573091 - 7573391
Alignment:
Q  87 ggcaataatgccatttaattatccttaaaataaagtaataataaaacttccccaaaagaatgtgagtatagttagacaatttcataagatgcacccaaat 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7573091 ggcaataatgccatttaattatccttaaaataaagtaataataaaacttccccaaaagaatgtgagtatagttagacaatttcataagatgcacccaaat 7573190  T
Q  187 ttactcttaattgtaggaaactcaattgatggaaagtatgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacataatt 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7573191 ttactcttaattgtaggaaactcaattgatggaaagtatgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacataatt 7573290  T
Q  287 ttgactctccaatttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctaggccttgaatagatgtgtgc 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7573291 ttgactctccaatttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctaggccttgaatagatgtgtgc 7573390  T
Q  387 t 387  Q
    |    
T  7573391 t 7573391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 87 - 387
Target Start/End: Original strand, 16667686 - 16667986
Alignment:
Q  87 ggcaataatgccatttaattatccttaaaataaagtaataataaaacttccccaaaagaatgtgagtatagttagacaatttcataagatgcacccaaat 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  16667686 ggcaataatgccatttaattatccttaaaataaagtaataataaaacttccccaaaagaatgtgagtatagttagacaatttcataagatgcacctaaat 16667785  T
Q  187 ttactcttaattgtaggaaactcaattgatggaaagtatgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacataatt 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16667786 ttactcttaattgtaggaaactcaattgatggaaagtatgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacataatt 16667885  T
Q  287 ttgactctccaatttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctaggccttgaatagatgtgtgc 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16667886 ttgactctccaatttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctaggccttgaatagatgtgtgc 16667985  T
Q  387 t 387  Q
    |    
T  16667986 t 16667986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 87 - 387
Target Start/End: Original strand, 41645707 - 41646007
Alignment:
Q  87 ggcaataatgccatttaattatccttaaaataaagtaataataaaacttccccaaaagaatgtgagtatagttagacaatttcataagatgcacccaaat 186  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  41645707 ggcaataatgtcatttaattatccttaaaataaagtaataataaaacttccccaaaataatgtgagtatagttagacaatttcataagatgcatccaaat 41645806  T
Q  187 ttactcttaattgtaggaaactcaattgatggaaagtatgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacataatt 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||||| |||    
T  41645807 ttactcttaattgtaggaaactcaattgatggaaagtatgaaggtcagccaattctatgatcaaaggttaaattcacatgtaaatcatcaaaacatgatt 41645906  T
Q  287 ttgactctccaatttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctaggccttgaatagatgtgtgc 386  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||    
T  41645907 ttgactctccaatttcagaaagatcaagaacattccattagaattttgaatagatggatgcttctacaattagttacctaggccttgaatagatgcgtgc 41646006  T
Q  387 t 387  Q
    |    
T  41646007 t 41646007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 89 - 387
Target Start/End: Complemental strand, 43565249 - 43564953
Alignment:
Q  89 caataatgccatttaattatccttaaaataaagtaataataaaacttccccaaaagaatgtgagtatagttagacaatttcataagatgcacccaaattt 188  Q
    |||||| | |||||||||||||||||  |||||||||||||||| || | |||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  43565249 caataaagtcatttaattatccttaa--taaagtaataataaaaatttctcaaaagaatgtgagtatagttagacaatttcataaggtgcacctaaattt 43565152  T
Q  189 actcttaattgtaggaaactcaattgatggaaagtatgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacataatttt 288  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||| |||||||||| |||||    
T  43565151 actcttaattgtaggaaattcaattgatggaaagtatgaagggcagccaattccatggtcaagggttaaatttccatgtaaatgatcaaaacatgatttt 43565052  T
Q  289 gactctccaatttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctaggccttgaatagatgtgtgct 387  Q
    |||| |||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  43565051 gactgtccaattttatgaagatgaagaacattccattagaattttgaatagatatgtgcttctacaattagttacctaggacttgaatagatgtgtgct 43564953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 89 - 387
Target Start/End: Complemental strand, 29456457 - 29456162
Alignment:
Q  89 caataatgccatttaattatccttaaaataaagtaataataaaacttccccaaaagaatgtgagtatagttagacaatttcataagatgcacccaaattt 188  Q
    |||||| | |||||||||||||||||  |||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  29456457 caataaagtcatttaattatccttaa--taaagtaataataaaaatttctcaaaagaatgtgagtatagttagacaatttcataagatgcacctaaattt 29456360  T
Q  189 actcttaattgtaggaaactcaattgatggaaagtatgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacataatttt 288  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||| |||| |||||||||||||||||||| |||||||||| |||||    
T  29456359 actcttaattgtaggaaattcaattgatggaaagtatgaagggcagctaattccatggtcaagggttaaatttccatgtaaatgatcaaaacatgatttt 29456260  T
Q  289 gactctccaatttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctaggccttgaatagatgtgtgct 387  Q
    |||||||| |||| | |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  29456259 gactctcc-attttacgaagatgaagaacattccattagaattttgaatagatatgtgcttctacaattagttacctaggacttgaatagatgtgtgct 29456162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 332 - 368
Target Start/End: Original strand, 7573375 - 7573411
Alignment:
Q  332 ttgaatagatgtgtgcttctacaattagttacctagg 368  Q
    |||||||||||||||||||||||||||||||||||||    
T  7573375 ttgaatagatgtgtgcttctacaattagttacctagg 7573411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 332 - 368
Target Start/End: Original strand, 16667970 - 16668006
Alignment:
Q  332 ttgaatagatgtgtgcttctacaattagttacctagg 368  Q
    |||||||||||||||||||||||||||||||||||||    
T  16667970 ttgaatagatgtgtgcttctacaattagttacctagg 16668006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 332 - 366
Target Start/End: Complemental strand, 29456178 - 29456144
Alignment:
Q  332 ttgaatagatgtgtgcttctacaattagttaccta 366  Q
    |||||||||||||||||||||||||||||||||||    
T  29456178 ttgaatagatgtgtgcttctacaattagttaccta 29456144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 332 - 366
Target Start/End: Complemental strand, 43564969 - 43564935
Alignment:
Q  332 ttgaatagatgtgtgcttctacaattagttaccta 366  Q
    |||||||||||||||||||||||||||||||||||    
T  43564969 ttgaatagatgtgtgcttctacaattagttaccta 43564935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 368
Target Start/End: Original strand, 5968165 - 5968201
Alignment:
Q  332 ttgaatagatgtgtgcttctacaattagttacctagg 368  Q
    ||||||||||||||||||||||||||||||| |||||    
T  5968165 ttgaatagatgtgtgcttctacaattagttatctagg 5968201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 366
Target Start/End: Original strand, 41645991 - 41646025
Alignment:
Q  332 ttgaatagatgtgtgcttctacaattagttaccta 366  Q
    ||||||||||| |||||||||||||||||||||||    
T  41645991 ttgaatagatgcgtgcttctacaattagttaccta 41646025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 87 - 387
Target Start/End: Complemental strand, 13787371 - 13787071
Alignment:
Q  87 ggcaataatgccatttaattatccttaaaataaagtaataataaaacttccccaaaagaatgtgagtatagttagacaatttcataagatgcacccaaat 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13787371 ggcaataatgccatttaattatccttaaaataaagtaataataaaacttccccaaaagaatgtgagtatagttagacaatttcataagatgcacccaaat 13787272  T
Q  187 ttactcttaattgtaggaaactcaattgatggaaagtatgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacataatt 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13787271 ttactcttaattgtaggaaactcaattgatggaaagtatgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacataatt 13787172  T
Q  287 ttgactctccaatttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctaggccttgaatagatgtgtgc 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13787171 ttgactctccaatttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctaggccttgaatagatgtgtgc 13787072  T
Q  387 t 387  Q
    |    
T  13787071 t 13787071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 87 - 387
Target Start/End: Original strand, 25806771 - 25807071
Alignment:
Q  87 ggcaataatgccatttaattatccttaaaataaagtaataataaaacttccccaaaagaatgtgagtatagttagacaatttcataagatgcacccaaat 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25806771 ggcaataatgccatttaattatccttaaaataaagtaataataaaacttccccaaaagaatgtgagtatagttagacaatttcataagatgcacccaaat 25806870  T
Q  187 ttactcttaattgtaggaaactcaattgatggaaagtatgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacataatt 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25806871 ttactcttaattgtaggaaactcaattgatggaaagtatgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacataatt 25806970  T
Q  287 ttgactctccaatttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctaggccttgaatagatgtgtgc 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25806971 ttgactctccaatttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctaggccttgaatagatgtgtgc 25807070  T
Q  387 t 387  Q
    |    
T  25807071 t 25807071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 87 - 387
Target Start/End: Original strand, 22911655 - 22911955
Alignment:
Q  87 ggcaataatgccatttaattatccttaaaataaagtaataataaaacttccccaaaagaatgtgagtatagttagacaatttcataagatgcacccaaat 186  Q
    |||||||| | |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  22911655 ggcaataaagtcatttaattatccttaaaataaggtaattataaaacttccccaaaagaatgtgagtatagttagacaatttcataagatgcacccaaaa 22911754  T
Q  187 ttactcttaattgtaggaaactcaattgatggaaagtatgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacataatt 286  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||| |||||||||| ||||||||| |||||||||| |||    
T  22911755 ttactcttaattgtaggaaactcaatggatggaaagtatgaaggtcagtcaattccatggtcaagggttaaattttcatgtaaatgatcaaaacatgatt 22911854  T
Q  287 ttgactctccaatttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctaggccttgaatagatgtgtgc 386  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||| ||||||||    
T  22911855 ttgactctccaatttcacgaagatcaagaacattccattagaattttgaatagatgcatgcttctacaatttgttacctaggccttgaataaatgtgtgc 22911954  T
Q  387 t 387  Q
    |    
T  22911955 t 22911955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 98 - 387
Target Start/End: Complemental strand, 39624574 - 39624275
Alignment:
Q  98 catttaattatccttaaaataaagtaataataaaacttccccaaaagaatgtgagtatagttagacaatttcataagatgcacccaaatttactcttaat 197  Q
    |||||||||||| ||||||||||||| | |||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||| |||||    
T  39624574 catttaattatctttaaaataaagtattcataaaacttccccaaaagaatgtgggtatagttagacaattccataagctgcacccaaatttacttttaat 39624475  T
Q  198 tgtaggaaactcaattgatggaaagtatgaaggtcagccaattccatgatcaaaggttaaatttccatgt----------aaatcatcaaaacataattt 287  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||  | |  | ||||||||||||||||          ||||||||||||||| ||||    
T  39624474 tgtaggaaactcagttgatggaaagtatgaaggtcaaccaattcctaggtatagggttaaatttccatgttggtgcgttcaaatcatcaaaacatgattt 39624375  T
Q  288 tgactctccaatttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctaggccttgaatagatgtgtgct 387  Q
    || ||||||||||| | ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||    
T  39624374 tgtctctccaattttacgaagatcaagaacatgccattaaaattttgaatagatgtgtgcttctacaattagttatgtaggccttgaatatatgtgtgct 39624275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 332 - 368
Target Start/End: Complemental strand, 13787087 - 13787051
Alignment:
Q  332 ttgaatagatgtgtgcttctacaattagttacctagg 368  Q
    |||||||||||||||||||||||||||||||||||||    
T  13787087 ttgaatagatgtgtgcttctacaattagttacctagg 13787051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 332 - 368
Target Start/End: Original strand, 25807055 - 25807091
Alignment:
Q  332 ttgaatagatgtgtgcttctacaattagttacctagg 368  Q
    |||||||||||||||||||||||||||||||||||||    
T  25807055 ttgaatagatgtgtgcttctacaattagttacctagg 25807091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 368
Target Start/End: Original strand, 22911939 - 22911975
Alignment:
Q  332 ttgaatagatgtgtgcttctacaattagttacctagg 368  Q
    ||||||| |||||||||||||||||||||||||||||    
T  22911939 ttgaataaatgtgtgcttctacaattagttacctagg 22911975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 368
Target Start/End: Complemental strand, 39624291 - 39624255
Alignment:
Q  332 ttgaatagatgtgtgcttctacaattagttacctagg 368  Q
    ||||||| |||||||||||||||||||||||||||||    
T  39624291 ttgaatatatgtgtgcttctacaattagttacctagg 39624255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 87 - 387
Target Start/End: Complemental strand, 28844057 - 28843757
Alignment:
Q  87 ggcaataatgccatttaattatccttaaaataaagtaataataaaacttccccaaaagaatgtgagtatagttagacaatttcataagatgcacccaaat 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||    
T  28844057 ggcaataatgccatttaattatccttaaaataaagtaataataaaactttcctaaaagaatgtgagtatagttagacaatttcataagatgcatccaaat 28843958  T
Q  187 ttactcttaattgtaggaaactcaattgatggaaagtatgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacataatt 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28843957 ttactcttaattgtaggaaactcaattgatggaaagtatgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacataatt 28843858  T
Q  287 ttgactctccaatttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctaggccttgaatagatgtgtgc 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28843857 ttgactctccaatttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctaggccttgaatagatgtgtgc 28843758  T
Q  387 t 387  Q
    |    
T  28843757 t 28843757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 98 - 381
Target Start/End: Original strand, 918005 - 918288
Alignment:
Q  98 catttaattatccttaaaataaagtaataataaaacttccccaaaagaatgtgagtatagttagacaatttcataagatgcacccaaatttactcttaat 197  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  918005 catttaattatccttaaaataaagtaataataaaactttctcaaaagaatgtgagtatagttagacaatttcataagatgcacgcaaatttactcttaat 918104  T
Q  198 tgtaggaaactcaattgatggaaagtatgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacataattttgactctcca 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| | |||||||||| ||||||||||||||    
T  918105 tgtaggaaactcaattgatggaaagtatgaaggtcagccaattccatggtcaagggttaaatttccatgtaactgatcaaaacatgattttgactctcca 918204  T
Q  298 atttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctaggccttgaatagatg 381  Q
    |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  918205 attttacgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctaggccttgaatagatg 918288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 87 - 368
Target Start/End: Complemental strand, 10187448 - 10187167
Alignment:
Q  87 ggcaataatgccatttaattatccttaaaataaagtaataataaaacttccccaaaagaatgtgagtatagttagacaatttcataagatgcacccaaat 186  Q
    |||||||| | |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10187448 ggcaataaagtcatttaattatccttaaaataatgtaataataaaacttcctcaaaagaatgtgagtatagttagacaatttcatcagatgcacccaaat 10187349  T
Q  187 ttactcttaattgtaggaaactcaattgatggaaagtatgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacataatt 286  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||    
T  10187348 ttactcttagttgtaggaaactcaattgatggaaagtatgaaggtcagccaattccatggtcaagggttaaatttccatgtaaatcatcaaaacatgatt 10187249  T
Q  287 ttgactctccaatttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctagg 368  Q
    |||||||| |||||||| ||||||  |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||    
T  10187248 ttgactcttcaatttcacgaagatttagaacattccattagaattttgaaaagatgtgtgcttctacaattatttacctagg 10187167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 87 - 368
Target Start/End: Complemental strand, 4139378 - 4139097
Alignment:
Q  87 ggcaataatgccatttaattatccttaaaataaagtaataataaaacttccccaaaagaatgtgagtatagttagacaatttcataagatgcacccaaat 186  Q
    |||||||| | |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||| ||||||    
T  4139378 ggcaataaagtcatttaattatccttaaaataatgtaataataaaacttcctcaaaagaatgtgagtatagttagacaatttcatcatatgcatccaaat 4139279  T
Q  187 ttactcttaattgtaggaaactcaattgatggaaagtatgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacataatt 286  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||| |||    
T  4139278 ttactcttagttgtagaaaactcaattgatggaaagtatgaaggtcagccaattccatggtcaagggttaaattttcatgtaaatcatcaaaacatgatt 4139179  T
Q  287 ttgactctccaatttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctagg 368  Q
    |||||||| |||||||| ||||||  ||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||    
T  4139178 ttgactcttcaatttcacgaagatatagaacattcaattagaattttgaaaagatgtgtgcttctacaattatttacctagg 4139097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 332 - 368
Target Start/End: Complemental strand, 28843773 - 28843737
Alignment:
Q  332 ttgaatagatgtgtgcttctacaattagttacctagg 368  Q
    |||||||||||||||||||||||||||||||||||||    
T  28843773 ttgaatagatgtgtgcttctacaattagttacctagg 28843737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 368
Target Start/End: Original strand, 11427456 - 11427492
Alignment:
Q  332 ttgaatagatgtgtgcttctacaattagttacctagg 368  Q
    |||||||||||||| ||||||||||||||||||||||    
T  11427456 ttgaatagatgtgtacttctacaattagttacctagg 11427492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 368
Target Start/End: Original strand, 918278 - 918314
Alignment:
Q  332 ttgaatagatgtgtgcttctacaattagttacctagg 368  Q
    ||||||||||| || ||||||||||||||||||||||    
T  918278 ttgaatagatgcgtacttctacaattagttacctagg 918314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 368
Target Start/End: Complemental strand, 20172804 - 20172768
Alignment:
Q  332 ttgaatagatgtgtgcttctacaattagttacctagg 368  Q
    |||||||||||||| |||||||||||||||| |||||    
T  20172804 ttgaatagatgtgtacttctacaattagttatctagg 20172768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 87 - 385
Target Start/End: Complemental strand, 36992182 - 36991885
Alignment:
Q  87 ggcaataatgccatttaattatccttaaaataaagtaataataaaacttccccaaaagaatgtgagtatagttagacaatttcataagatgcacccaaat 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36992182 ggcaataatgccatttaattatccttaaaataaagtaataataaaacttccccaaaagaatgtgagtatagttagacaatttcataagatgcacccaaat 36992083  T
Q  187 ttactcttaattgtaggaaactcaattgatggaaagtatgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacataatt 286  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  36992082 ttactctta-tggtaggaaactcaattgatggaaagtatgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacatgatt 36991984  T
Q  287 ttgactctccaatttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctaggccttgaatagatgtgtg 385  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||    
T  36991983 ttgactctccaatttcatgaagatcaagaacattccattaaaattttgaatagatgagtgcttctacaattatttacctagaccttgaatagatgtgtg 36991885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 87 - 387
Target Start/End: Original strand, 21604134 - 21604436
Alignment:
Q  87 ggcaataatgccatttaattatccttaaaataaagtaataataaaacttccccaaaagaatgtgagtatagttagacaatttcataagatgcacccaaat 186  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21604134 ggcaataatgtcatttaattatccttaaaataaggtaataataaaacttccccaaaagaatgtgagtatagttagacaatttcataagatgcacccaaat 21604233  T
Q  187 ttactcttaattgtaggaaactcaattgatggaaagtatgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacataatt 286  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  21604234 ttactcttaattgtaggaaactcagttgatggaaagcatgaaggtcagccaattccatgatcaaaggttaaattttcatgtaaatcatcaaaacatgatt 21604333  T
Q  287 ttgactctccaatttcatgaagatc--aagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctaggccttgaatagatgtgt 384  Q
    ||||||||| ||||||| |||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  21604334 ttgactctctaatttcacgaagatcataagaacatttcattagaattttgaatagatgtgtgcttctacaattagttacctagaccttgaatagatgtgt 21604433  T
Q  385 gct 387  Q
    |||    
T  21604434 gct 21604436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 87 - 387
Target Start/End: Original strand, 37300919 - 37301219
Alignment:
Q  87 ggcaataatgccatttaattatccttaaaataaagtaataataaaacttccccaaaagaatgtgagtatagttagacaatttcataagatgcacccaaat 186  Q
    |||||||| | |||||| |||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||    
T  37300919 ggcaataaagtcatttacttatccttgaaataaattaataataaaacttccccaaaagaacgtgagtatagttagacaattttataagatgcactcaaat 37301018  T
Q  187 ttactcttaattgtaggaaactcaattgatggaaagtatgaaggtcagccaattccatgatcaaaggttaaatttccatgtaaatcatcaaaacataatt 286  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||    
T  37301019 ttactcttaattataggaaactcaattgatggaaagtatgaaggtcagccaattccatggtcaaaggttaaatttccatgtacatcatcaaaacatgatt 37301118  T
Q  287 ttgactctccaatttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacctaggccttgaatagatgtgtgc 386  Q
    |||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37301119 ttgaatctccaatttcacgaagatcaagaacataccattagaattttgaatagatgtgtgcttctacaattagttacctaggccttgaatagatgtgtgc 37301218  T
Q  387 t 387  Q
    |    
T  37301219 t 37301219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 332 - 368
Target Start/End: Original strand, 21604420 - 21604456
Alignment:
Q  332 ttgaatagatgtgtgcttctacaattagttacctagg 368  Q
    |||||||||||||||||||||||||||||||||||||    
T  21604420 ttgaatagatgtgtgcttctacaattagttacctagg 21604456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 368
Target Start/End: Complemental strand, 36991899 - 36991863
Alignment:
Q  332 ttgaatagatgtgtgcttctacaattagttacctagg 368  Q
    ||||||||||||||| |||||||||||||||||||||    
T  36991899 ttgaatagatgtgtgtttctacaattagttacctagg 36991863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 362
Target Start/End: Original strand, 37301203 - 37301233
Alignment:
Q  332 ttgaatagatgtgtgcttctacaattagtta 362  Q
    |||||||||||||||||||||||||||||||    
T  37301203 ttgaatagatgtgtgcttctacaattagtta 37301233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 176 - 374
Target Start/End: Original strand, 8223 - 8430
Alignment:
Q  176 tgcacccaaatttactcttaattgtaggaaactcaattgatggaaagtatgaaggtcagccaattccatgatcaaaggttaaatttccatgt-------- 267  Q
    |||||||||||||||||| |||| || |||||||||||||||||||||||||| ||||  |||||||||| |||| ||||||||||||||||            
T  8223 tgcacccaaatttactctcaattttaagaaactcaattgatggaaagtatgaatgtcaatcaattccatggtcaagggttaaatttccatgttgccgcgt 8322  T
Q  268 --aaatcatcaaaacataattttgactctccaatttcatgaagatcaagaacattccattagaattttgaatagatgtgtgcttctacaattagttacct 365  Q
      ||||||||||||||| | |||| ||||| |||||||  |||||||||| | ||||||||| | ||||| ||||| |||||||||||  |||||||||     
T  8323 tcaaatcatcaaaacatgactttgtctctctaatttcagaaagatcaagagcgttccattag-agtttgagtagatatgtgcttctacggttagttaccg 8421  T
Q  366 aggccttga 374  Q
    |||| ||||    
T  8422 aggcattga 8430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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