View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2746_high_15 (Length: 357)
Name: NF2746_high_15
Description: NF2746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2746_high_15 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 116 - 342
Target Start/End: Original strand, 25432395 - 25432626
Alignment:
| Q |
116 |
tattgaaaacgtgtctttggatgctgctaatatattttctatttgttttaagtttgaataagtcaaagcaaaatatctattattttgttttagtggacaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25432395 |
tattgaaaacgtgtctttggatgctgctaacatattttctatttgttttaaatttgaataagtcaaagcaaaatatctattattttgttttagtggacaa |
25432494 |
T |
|
| Q |
216 |
gttagtttcacttagtaagtagtggtgctataattaaggagcattttattc-----gttatttcttttgatttgtaatataacatcagtttctcattaaa |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
25432495 |
gttagtttcacttagtaagtagtggtgctataattaaggagcattttattcattcagttatttcttttgatttgtaatataacatcagtttcttattaaa |
25432594 |
T |
|
| Q |
311 |
ataaatatagttttgcagccatattctctctg |
342 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |
|
|
| T |
25432595 |
ataaaaatagttttgcagccatattctctctg |
25432626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 115 - 342
Target Start/End: Original strand, 25428195 - 25428426
Alignment:
| Q |
115 |
atattgaaaacgtgtctttggatgctgctaatatattttctatttgttttaagtttgaataagtcaaagcaaaatatctattattttgttttagtggaca |
214 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
25428195 |
atattgaaaatgtgtctttggatgctgctaatatattttctatttgttttaaatttgaataagtcaaagcaaaagatctattattttgttttagtggaca |
25428294 |
T |
|
| Q |
215 |
agttagtttcacttagtaagtagtggtgctataattaaggagcattttattc-----gttatttcttttgatttgtaatataacatcagtttctcattaa |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
25428295 |
agttagtttcacttagtaagtagtggtgctataattaagaaccattttattcattcagttatttcttttgatttgtaatataacatcagtttctcatt-a |
25428393 |
T |
|
| Q |
310 |
aataaatatagttttgcagccatattctctctg |
342 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |
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|
| T |
25428394 |
aataaaaatagttttgcagccatattctctctg |
25428426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 116 - 342
Target Start/End: Original strand, 35943054 - 35943284
Alignment:
| Q |
116 |
tattgaaaacgtgtctttggatgctgctaatatattttctatttgttttaagtttgaataagtcaaagcaaaatatctattattttgttttagtggacaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35943054 |
tattgaaaacgtgtctttggatgctgctaacatattttctatttgttttaaatttgaataagtcaaagcaaaatatctattattttgttttagtggacaa |
35943153 |
T |
|
| Q |
216 |
gttagtttcacttagtaagtagtggtgctataattaaggagcattttattc-----gttatttcttttgatttgtaatataacatcagtttctcattaaa |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
35943154 |
gttagtttcacttagtaagtagtggtgctataattaaggagcattttattcattcagttatttcttttgatttgtaatataacatcagtttctcatt-aa |
35943252 |
T |
|
| Q |
311 |
ataaatatagttttgcagccatattctctctg |
342 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| |
|
|
| T |
35943253 |
ataaaaatagttttgcagccctattctctctg |
35943284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 41 - 115
Target Start/End: Original strand, 17259042 - 17259116
Alignment:
| Q |
41 |
catatcaaaccttaatgaagcaaaatacgtaaacaagtcaaataacatgtgcattgcacattataccaaaccaca |
115 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
17259042 |
catatcaaaccttaacgaagcaaaatacgtaaacaagtcaaataacatgtgcattgcaaattataccaaaccaca |
17259116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 116 - 342
Target Start/End: Complemental strand, 20334590 - 20334360
Alignment:
| Q |
116 |
tattgaaaacgtgtctttggatgctgctaatatattttctatttgttttaagtttgaataagtcaaagcaaaatatctattattttgttttagtggacaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20334590 |
tattgaaaacgtgtctttggatgctgctaacatattttctatttgttttaaatttgaataagtcaaagcaaaatatctattattttgttttagtggacaa |
20334491 |
T |
|
| Q |
216 |
gttagtttcacttagtaagtagtggtgctataattaaggagcattttattc-----gttatttcttttgatttgtaatataacatcagtttctcattaaa |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
20334490 |
gttagtttcacttagtaagtagtggtgctataattaaggagcattttattcattcagttatttcttttgatttgtaatataacatcagtttctcatt-aa |
20334392 |
T |
|
| Q |
311 |
ataaatatagttttgcagccatattctctctg |
342 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| |
|
|
| T |
20334391 |
ataaaaatagttttgcagccctattctctctg |
20334360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 116 - 342
Target Start/End: Complemental strand, 20330389 - 20330159
Alignment:
| Q |
116 |
tattgaaaacgtgtctttggatgctgctaatatattttctatttgttttaagtttgaataagtcaaagcaaaatatctattattttgttttagtggacaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20330389 |
tattgaaaacgtgtctttggatgctgttaacatattttctatttgttttaaatttgaataagtcaaagcaaaatatctattattttgttttagtggacaa |
20330290 |
T |
|
| Q |
216 |
gttagtttcacttagtaagtagtggtgctataattaaggagcattttattc-----gttatttcttttgatttgtaatataacatcagtttctcattaaa |
310 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
20330289 |
gttagtttcacttaataagtagtggtgctataattaaggagcattttattcattcagttatttcttttgatttgtaatataacatcagtttctcatt-aa |
20330191 |
T |
|
| Q |
311 |
ataaatatagttttgcagccatattctctctg |
342 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| |
|
|
| T |
20330190 |
ataaaaatagttttgcagccctattctctctg |
20330159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 184; Significance: 2e-99; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 116 - 342
Target Start/End: Original strand, 49214237 - 49214467
Alignment:
| Q |
116 |
tattgaaaacgtgtctttggatgctgctaatatattttctatttgttttaagtttgaataagtcaaagcaaaatatctattattttgttttagtggacaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
49214237 |
tattgaaaacgtgtctttggatgctgctaacatattttctatttgttttaaatttgaataagtcaaagcaaaatatctattattttgttttagtggacaa |
49214336 |
T |
|
| Q |
216 |
gttagtttcacttagtaagtagtggtgctataattaaggagcattttattc-----gttatttcttttgatttgtaatataacatcagtttctcattaaa |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
49214337 |
gttagtttcacttagtaagtagtggtgctataattaaggagcattttattcattcagttatttcttttgatttgtaatataacatcagtttctcatt-aa |
49214435 |
T |
|
| Q |
311 |
ataaatatagttttgcagccatattctctctg |
342 |
Q |
| |
|
||||| ||||||||||||| ||||||| |||| |
|
|
| T |
49214436 |
ataaaaatagttttgcagcaatattctatctg |
49214467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 114 - 341
Target Start/End: Original strand, 49210746 - 49210984
Alignment:
| Q |
114 |
catattgaaaacgtgtctttggatgctgctaatatattttctatttgttttaagtttgaataagtcaaagcaaaatatctattattttgttttagtggac |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
49210746 |
catattgaaaacgtgtctttggatgctgctaacatattttctgtttgttttaagtttgaataagtcaaagcaaaatatctattattttgttttactagac |
49210845 |
T |
|
| Q |
214 |
aagttagtttcacttagtaagtagtggtgctataattaaggagcattttattc-------gttatttct-----tttgatttgtaatataacatcagttt |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
49210846 |
aagttagtttcacttagtaagtagtggtgctataattaaggagcattttattcatattcagttatttcttttgatttgatttgtaatataacatcagttt |
49210945 |
T |
|
| Q |
302 |
ctcattaaaataaatatagttttgcagccatattctctct |
341 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
49210946 |
ctcatt-aaataaaaatagttttgcagccatattctctct |
49210984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 219
Target Start/End: Original strand, 32335155 - 32335214
Alignment:
| Q |
161 |
ttttaagtttgaataagtcaaagcaaaatatctattattttg-ttttagtggacaagtta |
219 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||| |||||| |||||||||| |
|
|
| T |
32335155 |
ttttaagtttgaatatgtcaaggcaaaatatctattattttgtttttagcggacaagtta |
32335214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 175; Significance: 4e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 116 - 342
Target Start/End: Original strand, 20749440 - 20749673
Alignment:
| Q |
116 |
tattgaaaacgtgtctttggatgctgctaatatattttctatttgttttaagtttgaataagtcaaagcaaaatatctattattttgttttagtggacaa |
215 |
Q |
| |
|
||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
20749440 |
tattgaaaacgtgtctttggatgttgctaacatattttcgatttgttttaagtttgaataagtcaaagcaaaatatctattattttgtttttgtggacaa |
20749539 |
T |
|
| Q |
216 |
gttagtttcacttagtaagtagtggtgctataattaaggagcattttattc-----gttatttcttttgatttgta--atataacatcagtttctcatta |
308 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
20749540 |
gttagtttcacttagtaaatagtggtgctataattaaggagcattttattcattcagttatttcttttgatttgtaatatataacatcagtttctcatta |
20749639 |
T |
|
| Q |
309 |
aaataaatatagttttgcagccatattctctctg |
342 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||| |
|
|
| T |
20749640 |
aaataaacatagtttcgcagccatattctctctg |
20749673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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