View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2746_high_23 (Length: 290)

Name: NF2746_high_23
Description: NF2746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2746_high_23
NF2746_high_23
[»] chr7 (3 HSPs)
chr7 (1-94)||(44350395-44350488)
chr7 (197-290)||(44350055-44350149)
chr7 (129-193)||(44350296-44350360)


Alignment Details
Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 44350488 - 44350395
Alignment:
Q  1 agataaatttaatgttatactaaattttttatttcgttgattttgtaagaaaaatatccaaaaattgataaactatatttttatttctgcgatt 94  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44350488 agataaatttaatgttatactaaattttttatttcgttgatgttgtaagaaaaatatccaaaaattgataaactatatttttatttctgcgatt 44350395  T

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Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 197 - 290
Target Start/End: Complemental strand, 44350149 - 44350055
Alignment:
Q  197 ccaacgaaaaatctagtgtgtcagctt-ggctctgatcttattgcacttagtcaaccctgtaaaacaaatatgggagatcgagatctagaatgat 290  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44350149 ccaacgaaaaatctagtgtgtcagctttggctctgatcttattgcacttagtcaaccctgtaaaacaaatatgggagatcgagatctagaatgat 44350055  T

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Target: chr7; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 44350360 - 44350296
Alignment:
Q  129 gaattatgggaggaggagtagctttgtagtttgaggaaggttaggacactctcttttcaacactc 193  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  44350360 gaattatgggaggaggagtagctttgtagtttgaggaaggctagaacactctcttttcaacactc 44350296  T

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