View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2746_high_24 (Length: 283)
Name: NF2746_high_24
Description: NF2746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2746_high_24 |
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Alignment Details
Target: chr7 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 17 - 263
Target Start/End: Complemental strand, 45972055 - 45971810
Alignment:
| Q |
17 |
atggtactaaacaatcacattgtaatattgtaagannnnnnnncactagacactgtaatattgtaagttaatctctgaaattataaaaggttnnnnnnnn |
116 |
Q |
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| T |
45972055 |
atggtactaaacaatcacattgtaatattgtaagattttttt-cactagacactgtaatattgtaagttaatctctgaaattataaaaggttaaaaaaaa |
45971957 |
T |
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| Q |
117 |
nnnnnnntgatattttgacatccaaactttgatgtcaaatacagtgttttttaaagtattttttaagaaaaatgctctttggcatgagacgaaaacaaac |
216 |
Q |
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| T |
45971956 |
aaaaaaatgatattttgacatccaaactttgatgttaaatacagtgtttttttaagtattttttaagaaaaatgctctttggcatgagacgaaaacaaag |
45971857 |
T |
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| Q |
217 |
aaacttatcacatcagtccgatttttagtcatgctacgatttctagt |
263 |
Q |
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| T |
45971856 |
aaacttatcacatcagtccgatttttagtcatgctacgatttctagt |
45971810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 10313938 - 10313905
Alignment:
| Q |
124 |
tgatattttgacatccaaactttgatgtcaaata |
157 |
Q |
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| T |
10313938 |
tgatattttgacatcaaaactttgatgtcaaata |
10313905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 160
Target Start/End: Complemental strand, 49107731 - 49107695
Alignment:
| Q |
124 |
tgatattttgacatccaaactttgatgtcaaatacag |
160 |
Q |
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| T |
49107731 |
tgatattttaacatcaaaactttgatgtcaaatacag |
49107695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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