View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2746_high_45 (Length: 236)
Name: NF2746_high_45
Description: NF2746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2746_high_45 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 6457005 - 6457226
Alignment:
| Q |
1 |
atagagacaaatacaaacaatactgaagaaaaatccgaaattggtttgacgtattctcaattgaaggaaaatgataccatggtaagttttgggacatata |
100 |
Q |
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| T |
6457005 |
atagagacaaatacaaacaatactgaagaaaaatccgaaattggtttgacgtattctcaattgaaggaaaatgataccatggtaagttttgggacatata |
6457104 |
T |
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| Q |
101 |
tatagggccagaaactggatctagcatgtggctttgtagttgtgctgtagttttaatttgttgcatgtacnnnnnnnnncttcattattgtatagtttat |
200 |
Q |
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| T |
6457105 |
tatagggccagaaactggatctagcatgtggctttgtagttgtgctgtagttttaatttgttgcatgtacttttttttttttcattattgtatagtttat |
6457204 |
T |
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| Q |
201 |
gacattaacatttgtgtatact |
222 |
Q |
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| T |
6457205 |
gacattaacatttgtgtatact |
6457226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 6595440 - 6595349
Alignment:
| Q |
1 |
atagagacaaa-tacaaacaatactgaagaaaaatccgaaattggtttgacgtattctcaattgaaggaaaatgataccatggtaagttttgg |
92 |
Q |
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| T |
6595440 |
atagagacaaaatacgaacaatactgaagaaaaatctgaaattggtt-gacgtattctcaattgaaggaaaatgatgccatggtcagttttgg |
6595349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 128
Target Start/End: Complemental strand, 6595307 - 6595275
Alignment:
| Q |
96 |
atatatatagggccagaaactggatctagcatg |
128 |
Q |
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| T |
6595307 |
atatatatagggccagaaactggatctagcatg |
6595275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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