View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2746_high_48 (Length: 220)
Name: NF2746_high_48
Description: NF2746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2746_high_48 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 37668235 - 37668023
Alignment:
| Q |
1 |
cccataattccaacgcttagtcttgaatttcagaacttactttagttccatcaattttggacacggtttatgatacacctaccccttaaaggcccaaaca |
100 |
Q |
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| T |
37668235 |
cccatagttccaacgcttagtcttgaatt-cagaacttactttacttccaccaattttggacacggtttatgatacacctaccccttaaaggcccaaaaa |
37668137 |
T |
|
| Q |
101 |
agaaaagaagagggatttgactgcatttgagcctagctcaattctaaaatttattcggtaaggttaaaaatgtctactacttataaatacattatatgtt |
200 |
Q |
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|
|||||||||||||||||||| ||||||||||||||||||||||||| |||||| || |||||||| |||||||||||||||||||| |||||| ||||| |
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| T |
37668136 |
agaaaagaagagggatttgattgcatttgagcctagctcaattctacaatttagtcactaaggttagaaatgtctactacttataaacacattacatgtt |
37668037 |
T |
|
| Q |
201 |
caaccttcatctca |
214 |
Q |
| |
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||||||| |||||| |
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| T |
37668036 |
caacctttatctca |
37668023 |
T |
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