View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2746_high_49 (Length: 216)

Name: NF2746_high_49
Description: NF2746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2746_high_49
NF2746_high_49
[»] chr6 (20 HSPs)
chr6 (144-201)||(30833021-30833078)
chr6 (144-194)||(5544287-5544337)
chr6 (144-200)||(18244046-18244102)
chr6 (138-201)||(25064697-25064760)
chr6 (144-201)||(10455746-10455803)
chr6 (47-112)||(12256471-12256535)
chr6 (144-175)||(1488118-1488149)
chr6 (144-199)||(10377158-10377213)
chr6 (138-201)||(19642575-19642638)
chr6 (144-194)||(19165362-19165412)
chr6 (145-201)||(2945599-2945656)
chr6 (47-112)||(8138460-8138525)
chr6 (47-112)||(9311932-9311997)
chr6 (144-201)||(18631476-18631533)
chr6 (148-201)||(34524879-34524932)
chr6 (138-201)||(9064869-9064933)
chr6 (138-201)||(14981730-14981794)
chr6 (56-112)||(24623319-24623375)
chr6 (145-201)||(34365739-34365795)
chr6 (138-198)||(34432797-34432857)
[»] chr1 (40 HSPs)
chr1 (40-201)||(23334575-23334738)
chr1 (138-201)||(23930572-23930635)
chr1 (142-200)||(5862133-5862191)
chr1 (144-201)||(7906360-7906417)
chr1 (144-201)||(9768843-9768900)
chr1 (138-201)||(43837429-43837492)
chr1 (144-194)||(2903061-2903111)
chr1 (147-201)||(47645833-47645887)
chr1 (144-194)||(50199510-50199560)
chr1 (144-201)||(23464020-23464077)
chr1 (138-201)||(9527429-9527493)
chr1 (146-194)||(42908782-42908830)
chr1 (138-194)||(49251423-49251479)
chr1 (48-116)||(51046137-51046205)
chr1 (47-111)||(52043267-52043331)
chr1 (61-116)||(24571623-24571678)
chr1 (138-201)||(27655033-27655096)
chr1 (143-201)||(4429515-4429573)
chr1 (77-123)||(15670633-15670679)
chr1 (144-201)||(19976586-19976644)
chr1 (143-201)||(23750154-23750212)
chr1 (144-201)||(29491473-29491531)
chr1 (138-200)||(42801884-42801946)
chr1 (136-194)||(43327021-43327079)
chr1 (59-113)||(46918000-46918054)
chr1 (144-201)||(1721144-1721201)
chr1 (47-92)||(7732416-7732461)
chr1 (47-112)||(9527991-9528056)
chr1 (47-112)||(13590104-13590169)
chr1 (148-201)||(18003820-18003873)
chr1 (144-201)||(27745161-27745218)
chr1 (79-116)||(34899624-34899661)
chr1 (47-112)||(40735007-40735072)
chr1 (51-112)||(43611422-43611483)
chr1 (144-201)||(52961116-52961173)
chr1 (147-199)||(3569050-3569102)
chr1 (144-180)||(11405481-11405517)
chr1 (56-112)||(17917140-17917196)
chr1 (48-112)||(24695554-24695618)
chr1 (144-200)||(37733760-37733816)
[»] chr7 (26 HSPs)
chr7 (143-201)||(46716337-46716395)
chr7 (144-190)||(11808053-11808099)
chr7 (138-200)||(46337896-46337958)
chr7 (138-199)||(8903823-8903883)
chr7 (148-201)||(10474550-10474603)
chr7 (145-194)||(43712348-43712397)
chr7 (47-112)||(47677579-47677644)
chr7 (138-201)||(1649156-1649219)
chr7 (144-201)||(21285387-21285445)
chr7 (75-113)||(30143388-30143426)
chr7 (144-194)||(30741575-30741625)
chr7 (147-201)||(32814831-32814885)
chr7 (47-112)||(1076978-1077043)
chr7 (47-112)||(23198751-23198816)
chr7 (144-201)||(35195847-35195904)
chr7 (59-116)||(35751369-35751426)
chr7 (59-112)||(41132450-41132503)
chr7 (136-185)||(47355829-47355878)
chr7 (138-194)||(2366368-2366424)
chr7 (146-190)||(7162704-7162748)
chr7 (144-200)||(10020503-10020559)
chr7 (143-171)||(19828163-19828191)
chr7 (145-201)||(27047750-27047806)
chr7 (144-200)||(32919852-32919908)
chr7 (145-201)||(36316009-36316065)
chr7 (64-112)||(45151388-45151436)
[»] chr4 (32 HSPs)
chr4 (135-201)||(27921900-27921966)
chr4 (48-116)||(32006495-32006563)
chr4 (144-200)||(35909197-35909253)
chr4 (146-201)||(37728943-37728998)
chr4 (144-201)||(9924860-9924917)
chr4 (145-201)||(35230330-35230386)
chr4 (144-199)||(13211386-13211441)
chr4 (138-201)||(15185082-15185145)
chr4 (146-201)||(20610743-20610798)
chr4 (50-112)||(18903760-18903822)
chr4 (147-201)||(26253956-26254010)
chr4 (144-201)||(36008278-36008336)
chr4 (144-198)||(43115275-43115329)
chr4 (144-201)||(48968244-48968302)
chr4 (59-112)||(4916161-4916214)
chr4 (145-201)||(9084762-9084819)
chr4 (145-194)||(9172406-9172455)
chr4 (47-112)||(14202481-14202546)
chr4 (47-112)||(15849228-15849293)
chr4 (144-201)||(20753159-20753216)
chr4 (47-108)||(35021473-35021534)
chr4 (144-201)||(45350280-45350337)
chr4 (144-201)||(45359759-45359816)
chr4 (144-201)||(47017980-47018037)
chr4 (144-201)||(49743366-49743423)
chr4 (144-200)||(3544466-3544522)
chr4 (56-124)||(10564455-10564523)
chr4 (138-201)||(12820433-12820497)
chr4 (147-175)||(25259478-25259506)
chr4 (51-111)||(29731382-29731442)
chr4 (145-201)||(32885692-32885748)
chr4 (145-201)||(41492533-41492589)
[»] chr2 (28 HSPs)
chr2 (144-201)||(11133079-11133137)
chr2 (138-201)||(44187707-44187771)
chr2 (146-192)||(2395009-2395054)
chr2 (144-194)||(14307728-14307778)
chr2 (144-201)||(40044113-40044171)
chr2 (47-116)||(23718929-23718998)
chr2 (47-116)||(24106601-24106670)
chr2 (146-199)||(44132599-44132652)
chr2 (138-194)||(10262750-10262806)
chr2 (146-198)||(7717613-7717666)
chr2 (138-201)||(25050268-25050331)
chr2 (154-201)||(36386157-36386204)
chr2 (146-201)||(37065470-37065525)
chr2 (136-194)||(16028134-16028192)
chr2 (147-201)||(30876954-30877008)
chr2 (144-194)||(45523676-45523726)
chr2 (47-96)||(346142-346191)
chr2 (144-201)||(580817-580874)
chr2 (144-201)||(1244573-1244630)
chr2 (59-112)||(5028862-5028915)
chr2 (144-201)||(7086257-7086314)
chr2 (144-201)||(17115578-17115635)
chr2 (47-96)||(17413350-17413399)
chr2 (59-112)||(43424665-43424718)
chr2 (146-175)||(45314440-45314469)
chr2 (144-200)||(18007254-18007310)
chr2 (145-201)||(24034088-24034144)
chr2 (144-196)||(26975332-26975384)
[»] chr8 (40 HSPs)
chr8 (59-116)||(39138996-39139053)
chr8 (145-201)||(29937214-29937270)
chr8 (138-201)||(26657860-26657923)
chr8 (136-199)||(36593200-36593263)
chr8 (47-112)||(8137929-8137994)
chr8 (47-108)||(39433404-39433465)
chr8 (145-201)||(14011073-14011129)
chr8 (138-201)||(9524961-9525024)
chr8 (147-201)||(14012615-14012670)
chr8 (138-201)||(24608511-24608574)
chr8 (146-201)||(43468741-43468796)
chr8 (147-201)||(216184-216238)
chr8 (147-201)||(220399-220453)
chr8 (147-201)||(689554-689608)
chr8 (147-201)||(692744-692798)
chr8 (147-201)||(696953-697007)
chr8 (147-201)||(729807-729861)
chr8 (147-201)||(734022-734076)
chr8 (147-201)||(853702-853756)
chr8 (147-201)||(857918-857972)
chr8 (144-194)||(18577124-18577174)
chr8 (144-198)||(26192722-26192776)
chr8 (47-113)||(40316850-40316916)
chr8 (144-201)||(15042399-15042456)
chr8 (59-112)||(18638106-18638159)
chr8 (59-116)||(24195255-24195312)
chr8 (144-201)||(25119212-25119269)
chr8 (62-111)||(28580953-28581002)
chr8 (144-201)||(28979030-28979087)
chr8 (138-175)||(33982220-33982257)
chr8 (144-201)||(42688060-42688117)
chr8 (144-201)||(43847706-43847763)
chr8 (145-201)||(2376522-2376578)
chr8 (136-180)||(4293908-4293952)
chr8 (51-111)||(4479740-4479800)
chr8 (50-114)||(5330052-5330116)
chr8 (47-115)||(8544598-8544666)
chr8 (145-201)||(13762547-13762603)
chr8 (144-192)||(22847296-22847344)
chr8 (145-201)||(39432363-39432419)
[»] chr5 (24 HSPs)
chr5 (138-201)||(37303937-37304001)
chr5 (136-201)||(11246520-11246585)
chr5 (144-201)||(18872525-18872582)
chr5 (145-201)||(7147054-7147110)
chr5 (138-201)||(2411322-2411385)
chr5 (138-201)||(25660916-25660979)
chr5 (138-201)||(36741995-36742058)
chr5 (146-201)||(38040270-38040325)
chr5 (144-199)||(42781628-42781683)
chr5 (146-199)||(30733125-30733179)
chr5 (47-112)||(1809038-1809103)
chr5 (47-116)||(2839792-2839861)
chr5 (47-108)||(3156528-3156589)
chr5 (144-201)||(3535970-3536027)
chr5 (144-194)||(3740967-3741018)
chr5 (59-112)||(5551283-5551336)
chr5 (144-201)||(13862129-13862186)
chr5 (47-96)||(24498578-24498627)
chr5 (144-201)||(27440332-27440389)
chr5 (138-175)||(38129041-38129078)
chr5 (138-194)||(33800904-33800960)
chr5 (148-200)||(38040130-38040182)
chr5 (145-201)||(41405123-41405179)
chr5 (144-200)||(42801475-42801531)
[»] chr3 (25 HSPs)
chr3 (77-123)||(39498382-39498428)
chr3 (138-199)||(43774190-43774252)
chr3 (147-201)||(51412027-51412081)
chr3 (59-116)||(33404234-33404291)
chr3 (146-201)||(42271049-42271104)
chr3 (145-200)||(43566831-43566886)
chr3 (147-185)||(27119296-27119334)
chr3 (144-194)||(41121882-41121932)
chr3 (144-194)||(49146095-49146145)
chr3 (146-199)||(4045670-4045723)
chr3 (47-116)||(4332665-4332734)
chr3 (47-112)||(4668678-4668743)
chr3 (136-201)||(8475419-8475484)
chr3 (59-116)||(17755127-17755184)
chr3 (59-116)||(19056447-19056504)
chr3 (47-112)||(32843264-32843329)
chr3 (63-112)||(35557103-35557152)
chr3 (46-115)||(53852728-53852797)
chr3 (146-190)||(6054261-6054305)
chr3 (144-199)||(12711974-12712030)
chr3 (146-178)||(13748633-13748665)
chr3 (145-201)||(16874225-16874281)
chr3 (138-194)||(34407118-34407174)
chr3 (145-201)||(40786284-40786340)
chr3 (145-201)||(53467953-53468008)
[»] scaffold0024 (1 HSPs)
scaffold0024 (144-201)||(41800-41857)
[»] scaffold0012 (1 HSPs)
scaffold0012 (47-112)||(118813-118878)
[»] scaffold0168 (1 HSPs)
scaffold0168 (147-201)||(34070-34124)
[»] scaffold0112 (1 HSPs)
scaffold0112 (138-201)||(17959-18023)


Alignment Details
Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 30833078 - 30833021
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||||||||||||||| |||||||||||||| ||| ||||| |||||||||||||||    
T  30833078 gggttcgaaccccgacccctgcatataacaatgcatgtccctgccaactgaactatgc 30833021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 144 - 194
Target Start/End: Complemental strand, 5544337 - 5544287
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactga 194  Q
    ||||||||||||||||| |||||||||||||||||| |||||| |||||||    
T  5544337 gggttcgaaccccgacccctgcatataacaatacatgtccctatcaactga 5544287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 18244046 - 18244102
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatg 200  Q
    |||||||||||||||||||||||||||| ||| ||||  |||||||||||| |||||    
T  18244046 gggttcgaaccccgacctctgcatataataatgcattgtcctaccaactgagctatg 18244102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 25064697 - 25064760
Alignment:
Q  138 tgtctagggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||| ||||||||||||| ||| |||||||||| ||| ||| ||| |||||||||||||||||    
T  25064697 tgtctggggttcgaaccccaacccctgcatataataatgcatgtccataccaactgaactatgc 25064760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 10455803 - 10455746
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    |||||||||||||| || |||||||||||||| ||| | ||| |||||||||||||||    
T  10455803 gggttcgaaccccggcccctgcatataacaatgcatgttcctgccaactgaactatgc 10455746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 12256471 - 12256535
Alignment:
Q  47 gtcctcgtcagtttagctcagttgatttgaataatacataaaatatgtaaagtttggggttcaaac 112  Q
    |||||||| || |||||||||||| || ||||||| ||||||||||||||||| ||||||| ||||    
T  12256471 gtcctcgtgagcttagctcagttggtt-gaataatgcataaaatatgtaaagtctggggtttaaac 12256535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 175
Target Start/End: Complemental strand, 1488149 - 1488118
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaat 175  Q
    ||||||||||||||||||||||||||||||||    
T  1488149 gggttcgaaccccgacctctgcatataacaat 1488118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 199
Target Start/End: Original strand, 10377158 - 10377213
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactat 199  Q
    |||||||||||||| ||||||||||||| ||| ||||  |||||||||||| ||||    
T  10377158 gggttcgaaccccggcctctgcatataataatgcattgtcctaccaactgagctat 10377213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 19642575 - 19642638
Alignment:
Q  138 tgtctagggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||| |||||||||||||||||  ||||||||| ||| ||||  |||||||||||| ||||||    
T  19642575 tgtctggggttcgaaccccgaccgatgcatataataatgcattgtcctaccaactgagctatgc 19642638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 194
Target Start/End: Complemental strand, 19165412 - 19165362
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactga 194  Q
    ||||||||||||| |||||||||||||| ||| ||||  ||||||||||||    
T  19165412 gggttcgaaccccaacctctgcatataataatgcattgtcctaccaactga 19165362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 2945656 - 2945599
Alignment:
Q  145 ggttcgaaccccgacctctgcatataacaatacatt-tccctaccaactgaactatgc 201  Q
    |||| ||||||||||| |||||||||||||| |||| ||||| |||||||| ||||||    
T  2945656 ggtttgaaccccgacccctgcatataacaatgcattgtccctgccaactgagctatgc 2945599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 8138525 - 8138460
Alignment:
Q  47 gtcctcgtcagtttagctcagttgatttgaataatacataaaatatgtaaagtttggggttcaaac 112  Q
    |||||||| | |||||||||||||||  ||| ||| ||||| |||||||| || ||||||||||||    
T  8138525 gtcctcgtgaatttagctcagttgataagaacaatgcataatatatgtaaggtctggggttcaaac 8138460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 9311997 - 9311932
Alignment:
Q  47 gtcctcgtcagtttagctcagttgatttgaataatacataaaatatgtaaagtttggggttcaaac 112  Q
    |||||||| || ||| |||||||| | |||||||||||||| ||||||||  |||| |||||||||    
T  9311997 gtcctcgtgagcttaactcagttggtatgaataatacataatatatgtaagatttgaggttcaaac 9311932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 18631533 - 18631476
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||||||| ||||||| ||||||||||||||  |||  |||||||||||| ||||||    
T  18631533 gggttcgaatcccgacccctgcatataacaatgtattgtcctaccaactgagctatgc 18631476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 201
Target Start/End: Complemental strand, 34524932 - 34524879
Alignment:
Q  148 tcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    |||||||||| || |||||||||||||| ||| ||||| |||||||| ||||||    
T  34524932 tcgaaccccggcccctgcatataacaatgcatgtccctgccaactgagctatgc 34524879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 201
Target Start/End: Complemental strand, 9064933 - 9064869
Alignment:
Q  138 tgtctagggttcgaaccccgacctctgcatataacaatacatt-tccctaccaactgaactatgc 201  Q
    ||||| |||||||||||||| || |||||||||| ||| |||| ||||| |||||||| ||||||    
T  9064933 tgtctggggttcgaaccccggcccctgcatataataatgcattgtccctgccaactgagctatgc 9064869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 14981730 - 14981794
Alignment:
Q  138 tgtctagggttcgaaccccgacctctgcatataacaatacatt-tccctaccaactgaactatgc 201  Q
    |||| ||||||||||||||| || |||||||||| ||| |||| ||||| |||||||| ||||||    
T  14981730 tgtccagggttcgaaccccggcccctgcatataataatgcattgtccctgccaactgagctatgc 14981794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 24623375 - 24623319
Alignment:
Q  56 agtttagctcagttgatttgaataatacataaaatatgtaaagtttggggttcaaac 112  Q
    ||||||||||||||||| || | ||| ||||| |||||||| ||| |||||||||||    
T  24623375 agtttagctcagttgatatggacaatgcataatatatgtaaggttcggggttcaaac 24623319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 34365795 - 34365739
Alignment:
Q  145 ggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||||||||||| || ||||| |||| ||| ||||  |||||||||||||||||||    
T  34365795 ggttcgaaccccggcccctgcacataataatgcattgtcctaccaactgaactatgc 34365739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 34432797 - 34432857
Alignment:
Q  138 tgtctagggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaacta 198  Q
    ||||| ||||||||||||| |||||||||||||| |    || ||||||||||||||||||    
T  34432797 tgtctggggttcgaaccccaacctctgcatataatatgcaatatccctaccaactgaacta 34432857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 40)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 40 - 201
Target Start/End: Original strand, 23334575 - 23334738
Alignment:
Q  40 tgaataagtcctcgtcagtttagctcagttgatttgaataatacataaaatatgtaaagtttggggttcaaactccgcctaccacnnnnnnn--gccaga 137  Q
    ||||||||||||||| || ||| ||||| ||||||| | ||| ||||||||||| || |||||  |||||||||||| | | |||         | ||||    
T  23334575 tgaataagtcctcgtgagcttaactcagctgatttggacaatgcataaaatatgcaaggtttgaagttcaaactccgaccatcacaataaaaaagtcaga 23334674  T
Q  138 tgtctagggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    |||||||| ||||||| ||||| ||| ||||||||||| ||||| |||| |||||||| |||||    
T  23334675 tgtctaggattcgaactccgacttctacatataacaatgcattttcctatcaactgaaatatgc 23334738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 23930572 - 23930635
Alignment:
Q  138 tgtctagggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    |||| |||||||||||||||||| |||||||||| ||| ||||  |||||||||||||||||||    
T  23930572 tgtccagggttcgaaccccgacccctgcatataataatgcattgtcctaccaactgaactatgc 23930635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 5862191 - 5862133
Alignment:
Q  142 tagggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatg 200  Q
    |||||||||||||||||||||| ||||||||||| ||| ||||| |||||||| |||||    
T  5862191 tagggttcgaaccccgacctctacatataacaatgcatgtccctgccaactgagctatg 5862133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 7906360 - 7906417
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    |||||||||||||  || |||||||||||||| ||| |||||||||||||||||||||    
T  7906360 gggttcgaaccccagcccctgcatataacaatgcatgtccctaccaactgaactatgc 7906417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 9768843 - 9768900
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||||||||||||||| |||||||||||||| ||| ||||| |||||||| ||||||    
T  9768843 gggttcgaaccccgacccctgcatataacaatgcatgtccctgccaactgagctatgc 9768900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 43837429 - 43837492
Alignment:
Q  138 tgtctagggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    |||| |||||||||||||||||| ||||||| || ||| ||||| |||||||||||| ||||||    
T  43837429 tgtccagggttcgaaccccgacccctgcatagaagaatgcattttcctaccaactgagctatgc 43837492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 2903061 - 2903111
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactga 194  Q
    |||||||||||||||||||||||||||||||| ||| |||||  |||||||    
T  2903061 gggttcgaaccccgacctctgcatataacaatgcatgtccctggcaactga 2903111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 47645833 - 47645887
Alignment:
Q  147 ttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||||||||||||||||||||||||||| ||| || || |||||||| ||||||    
T  47645833 ttcgaaccccgacctctgcatataacaatgcatgtctctgccaactgagctatgc 47645887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 50199510 - 50199560
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactga 194  Q
    |||||||||||||| || |||||||||||||| ||| ||||||||||||||    
T  50199510 gggttcgaaccccggcccctgcatataacaatgcatgtccctaccaactga 50199560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 23464020 - 23464077
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    |||||||||||||| || |||||||||| ||| ||||  |||||||||||||||||||    
T  23464020 gggttcgaaccccggcccctgcatataataatgcattgtcctaccaactgaactatgc 23464077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 201
Target Start/End: Complemental strand, 9527493 - 9527429
Alignment:
Q  138 tgtctagggttcgaaccccgacctctgcatataacaatacatt-tccctaccaactgaactatgc 201  Q
    |||| ||||||| |||||||||| |||||||||||||| |||| ||||| |||||||| ||||||    
T  9527493 tgtccagggttcaaaccccgacccctgcatataacaatgcattgtccctgccaactgagctatgc 9527429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 194
Target Start/End: Complemental strand, 42908830 - 42908782
Alignment:
Q  146 gttcgaaccccgacctctgcatataacaatacatttccctaccaactga 194  Q
    ||||||||||||||| |||||||||||||| ||| ||||| ||||||||    
T  42908830 gttcgaaccccgacccctgcatataacaatgcatgtccctgccaactga 42908782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 49251423 - 49251479
Alignment:
Q  138 tgtctagggttcgaaccccgacctctgcatataacaatacatttccctaccaactga 194  Q
    ||||| ||||||||||||||||| |||||||||| ||| ||||  ||||||||||||    
T  49251423 tgtctggggttcgaaccccgacccctgcatataataatgcattgtcctaccaactga 49251479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 116
Target Start/End: Original strand, 51046137 - 51046205
Alignment:
Q  48 tcctcgtcagtttagctcagttgatttgaataatacataaaatatgtaaagtttggggttcaaactccg 116  Q
    ||||||| |||||| |||||||| | |||| |||||||||||||||||| ||| || |||| |||||||    
T  51046137 tcctcgtgagtttaactcagttggtatgaacaatacataaaatatgtaaggttcggagttcgaactccg 51046205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 52043267 - 52043331
Alignment:
Q  47 gtcctcgtcagtttagctcagttgatttgaataatacataaaatatgtaaagtttggggttcaaa 111  Q
    |||||||| ||||||||||||||| | || ||||| ||||||||||| || ||| ||||||||||    
T  52043267 gtcctcgtgagtttagctcagttggtatggataatgcataaaatatgcaatgttcggggttcaaa 52043331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 24571678 - 24571623
Alignment:
Q  61 agctcagttgatttgaataatacataaaatatgtaaagtttggggttcaaactccg 116  Q
    ||||||||||||| ||| ||||||||| ||||| || || ||||||||||||||||    
T  24571678 agctcagttgattggaacaatacataatatatgcaaggtctggggttcaaactccg 24571623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 27655033 - 27655096
Alignment:
Q  138 tgtctagggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||| ||||||| | || |||||||| |||||||||| ||| ||||| |||||||||||||||    
T  27655033 tgtctggggttcgtatccagacctctgtatataacaattcatgtccctgccaactgaactatgc 27655096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 201
Target Start/End: Original strand, 4429515 - 4429573
Alignment:
Q  143 agggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    |||||||||||||| ||| |||||||||| ||| ||||  |||||||||||| ||||||    
T  4429515 agggttcgaaccccaacccctgcatataataatgcattgtcctaccaactgagctatgc 4429573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 123
Target Start/End: Complemental strand, 15670679 - 15670633
Alignment:
Q  77 ataatacataaaatatgtaaagtttggggttcaaactccgcctacca 123  Q
    ||||||||||| |||||||| ||||||||||||||| ||| ||||||    
T  15670679 ataatacataatatatgtaaggtttggggttcaaaccccgactacca 15670633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 19976586 - 19976644
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatt-tccctaccaactgaactatgc 201  Q
    |||||||||||||| || ||||||||||| ||||||| ||||| |||||||| ||||||    
T  19976586 gggttcgaaccccggcccctgcatataaccatacattgtccctgccaactgagctatgc 19976644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 201
Target Start/End: Complemental strand, 23750212 - 23750154
Alignment:
Q  143 agggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    |||||| |||||||||||  || |||||||||| ||| |||||||||||||| ||||||    
T  23750212 agggtttgaaccccgacccatgtatataacaatgcatatccctaccaactgagctatgc 23750154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 29491531 - 29491473
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatt-tccctaccaactgaactatgc 201  Q
    ||||||||||||||||| |||||||||| ||| |||| ||||| |||||||| ||||||    
T  29491531 gggttcgaaccccgacccctgcatataataatgcattgtccctgccaactgagctatgc 29491473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 42801946 - 42801884
Alignment:
Q  138 tgtctagggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatg 200  Q
    ||||| ||||||||||||| |||||||||||||||||| ||| || ||  ||||||| |||||    
T  42801946 tgtctggggttcgaaccccaacctctgcatataacaatgcatgtctctgtcaactgagctatg 42801884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 43327079 - 43327021
Alignment:
Q  136 gatgtctagggttcgaaccccgacctctgcatataacaatacatttccctaccaactga 194  Q
    ||||| ||||||||||||  ||||| |||||||||||||||||| ||||| | ||||||    
T  43327079 gatgtttagggttcgaacttcgacccctgcatataacaatacatgtccctgcaaactga 43327021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 113
Target Start/End: Complemental strand, 46918054 - 46918000
Alignment:
Q  59 ttagctcagttgatttgaataatacataaaatatgtaaagtttggggttcaaact 113  Q
    |||||| ||||| || |||||||| |||||||||||||  |||||||||||||||    
T  46918054 ttagctaagttggttggaataatatataaaatatgtaagatttggggttcaaact 46918000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 1721201 - 1721144
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||||||| |||| || |||||||||||||| ||| | |||||||||||| ||||||    
T  1721201 gggttcgaaacccggcccctgcatataacaatgcatgttcctaccaactgagctatgc 1721144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 7732416 - 7732461
Alignment:
Q  47 gtcctcgtcagtttagctcagttgatttgaataatacataaaatat 92  Q
    |||||||| |||||||||||||||||||| ||||| ||||| ||||    
T  7732416 gtcctcgtgagtttagctcagttgatttggataatgcataatatat 7732461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 9527991 - 9528056
Alignment:
Q  47 gtcctcgtcagtttagctcagttgatttgaataatacataaaatatgtaaagtttggggttcaaac 112  Q
    |||||||| || |||||| | |||||||||| ||||||||||||||| || ||| | |||||||||    
T  9527991 gtcctcgtgagcttagctaaattgatttgaacaatacataaaatatgcaaggttcgaggttcaaac 9528056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 13590104 - 13590169
Alignment:
Q  47 gtcctcgtcagtttagctcagttgatttgaataatacataaaatatgtaaagtttggggttcaaac 112  Q
    |||||||| || |||||||||||| |||| | ||| |||||||||||||| ||| || ||||||||    
T  13590104 gtcctcgtgagcttagctcagttggtttggacaatgcataaaatatgtaaggttcggagttcaaac 13590169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 201
Target Start/End: Complemental strand, 18003873 - 18003820
Alignment:
Q  148 tcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    |||||||||| || |||||||||||||| ||| ||||| |||||||| ||||||    
T  18003873 tcgaaccccggcccctgcatataacaatgcatgtccctgccaactgagctatgc 18003820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 27745218 - 27745161
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||||||||||||| | |||||||||| ||| ||||| |||||||| ||| ||||||    
T  27745218 gggttcgaaccccgatccctgcatataataatgcattttcctaccaaatgagctatgc 27745161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 79 - 116
Target Start/End: Complemental strand, 34899661 - 34899624
Alignment:
Q  79 aatacataaaatatgtaaagtttggggttcaaactccg 116  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  34899661 aatacataatatatgcaaagtttggggttcaaactccg 34899624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 40735072 - 40735007
Alignment:
Q  47 gtcctcgtcagtttagctcagttgatttgaataatacataaaatatgtaaagtttggggttcaaac 112  Q
    |||||||| ||||||||||||||  | || | ||| |||||||||||||| ||| |||||||||||    
T  40735072 gtcctcgtaagtttagctcagttagtatggacaatgcataaaatatgtaaggttcggggttcaaac 40735007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 43611422 - 43611483
Alignment:
Q  51 tcgtcagtttagctcagttgatttgaataatacataaaatatgtaaagtttggggttcaaac 112  Q
    |||| ||||||||||||||| | || | ||||||||| |||||||| || ||||||||||||    
T  43611422 tcgtgagtttagctcagttggtatggacaatacataatatatgtaaggtatggggttcaaac 43611483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 52961116 - 52961173
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    |||||||||||||| || |||||||||||||| ||| ||| | |||||||| ||||||    
T  52961116 gggttcgaaccccggcccctgcatataacaatgcatgtccttgccaactgagctatgc 52961173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 199
Target Start/End: Complemental strand, 3569102 - 3569050
Alignment:
Q  147 ttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactat 199  Q
    ||||||||| |||| || ||||||||||| ||| ||||| |||||||||||||    
T  3569102 ttcgaaccctgacccctacatataacaatgcatgtccctgccaactgaactat 3569050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 180
Target Start/End: Complemental strand, 11405517 - 11405481
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatt 180  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  11405517 gggttcgaaccccgacccctgcatataacaatgcatt 11405481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 112
Target Start/End: Complemental strand, 17917196 - 17917140
Alignment:
Q  56 agtttagctcagttgatttgaataatacataaaatatgtaaagtttggggttcaaac 112  Q
    ||||||||||||||||| || | ||| |||||||||||||| ||| ||| |||||||    
T  17917196 agtttagctcagttgatatggacaatgcataaaatatgtaaggttcgggattcaaac 17917140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 24695554 - 24695618
Alignment:
Q  48 tcctcgtcagtttagctcagttgatttgaataatacataaaatatgtaaagtttggggttcaaac 112  Q
    ||||||| ||||||||||||||| | |||| ||||||||| ||||| ||| || | |||||||||    
T  24695554 tcctcgtgagtttagctcagttggtatgaacaatacataatatatgcaaaattcgaggttcaaac 24695618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 37733816 - 37733760
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatg 200  Q
    |||||||||||||| || |||||||||| ||| ||||  |||||||||||| |||||    
T  37733816 gggttcgaaccccgtccactgcatataataatgcattgtcctaccaactgagctatg 37733760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 143 - 201
Target Start/End: Complemental strand, 46716395 - 46716337
Alignment:
Q  143 agggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||||||||||||||||||||||||||| ||| ||||  |||||||||||| ||||||    
T  46716395 agggttcgaaccccgacctctgcatataataatgcattgtcctaccaactgagctatgc 46716337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 190
Target Start/End: Complemental strand, 11808099 - 11808053
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaa 190  Q
    ||||||||||||||||| |||||||||||||| ||| ||||||||||    
T  11808099 gggttcgaaccccgacccctgcatataacaatgcatgtccctaccaa 11808053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 46337896 - 46337958
Alignment:
Q  138 tgtctagggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatg 200  Q
    |||| |||||||||||||||| | |||||||||| ||| ||||  ||||||||||||||||||    
T  46337896 tgtccagggttcgaaccccgatccctgcatataataatgcattgtcctaccaactgaactatg 46337958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 8903823 - 8903883
Alignment:
Q  138 tgtctagggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactat 199  Q
    ||||| ||||||||||||||| | |||||||||||||| ||| |||||| ||||||||||||    
T  8903823 tgtctggggttcgaaccccgatc-ctgcatataacaatgcatatccctatcaactgaactat 8903883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 201
Target Start/End: Original strand, 10474550 - 10474603
Alignment:
Q  148 tcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||||||||||| ||||||||||||||  || || ||||||||||||||||||    
T  10474550 tcgaaccccgacccctgcatataacaatgtatgtctctaccaactgaactatgc 10474603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 43712348 - 43712397
Alignment:
Q  145 ggttcgaaccccgacctctgcatataacaatacatttccctaccaactga 194  Q
    |||||||||||||||| ||| |||||||||| ||| ||||||||||||||    
T  43712348 ggttcgaaccccgacccctgtatataacaatgcatgtccctaccaactga 43712397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 47677644 - 47677579
Alignment:
Q  47 gtcctcgtcagtttagctcagttgatttgaataatacataaaatatgtaaagtttggggttcaaac 112  Q
    |||||||| ||||||||||||||| || ||| ||| ||||||||||| || ||| |||||||||||    
T  47677644 gtcctcgtgagtttagctcagttggttagaacaatgcataaaatatgcaatgttcggggttcaaac 47677579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 201
Target Start/End: Complemental strand, 1649219 - 1649156
Alignment:
Q  138 tgtctagggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    |||| ||||||||||||| | || ||||||| |||||| ||| |||||||||||||| ||||||    
T  1649219 tgtccagggttcgaaccctggcccctgcataaaacaatgcatatccctaccaactgagctatgc 1649156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 21285387 - 21285445
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatt-tccctaccaactgaactatgc 201  Q
    |||||||||||||| || |||||||||||||| |||| ||||| |||||||| ||||||    
T  21285387 gggttcgaaccccggcccctgcatataacaatgcattgtccctgccaactgagctatgc 21285445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 113
Target Start/End: Complemental strand, 30143426 - 30143388
Alignment:
Q  75 gaataatacataaaatatgtaaagtttggggttcaaact 113  Q
    |||||||| ||||||||| ||||||||||||||||||||    
T  30143426 gaataatatataaaatatataaagtttggggttcaaact 30143388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 194
Target Start/End: Complemental strand, 30741625 - 30741575
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactga 194  Q
    |||||||||| ||| || |||||||||||||||||||  ||||||||||||    
T  30741625 gggttcgaacaccggcccctgcatataacaatacattatcctaccaactga 30741575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 201
Target Start/End: Complemental strand, 32814885 - 32814831
Alignment:
Q  147 ttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||||| |||||| |||||||||| ||| ||| |||||||||||||| ||||||    
T  32814885 ttcgaactccgacccctgcatataataatgcatgtccctaccaactgagctatgc 32814831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 1076978 - 1077043
Alignment:
Q  47 gtcctcgtcagtttagctcagttgatttgaataatacataaaatatgtaaagtttggggttcaaac 112  Q
    |||||||| || |||||||||||| |||| ||||| ||| | ||||| || |||||||||||||||    
T  1076978 gtcctcgtgagcttagctcagttgttttggataatgcatgatatatgcaaggtttggggttcaaac 1077043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 23198816 - 23198751
Alignment:
Q  47 gtcctcgtcagtttagctcagttgatttgaataatacataaaatatgtaaagtttggggttcaaac 112  Q
    |||||||| |||||| |||||||| | |||| ||| ||||||||||| |||||  |||||||||||    
T  23198816 gtcctcgtgagtttaactcagttggtatgaacaatgcataaaatatgcaaagtccggggttcaaac 23198751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 35195904 - 35195847
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    |||||||||||||| || |||||||||| ||| ||| ||||| |||||||| ||||||    
T  35195904 gggttcgaaccccggcccctgcatataataatgcatgtccctgccaactgagctatgc 35195847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 35751426 - 35751369
Alignment:
Q  59 ttagctcagttgatttgaataatacataaaatatgtaaagtttggggttcaaactccg 116  Q
    |||||||| ||||| |||||||| ||||| ||||||||||| | || |||||||||||    
T  35751426 ttagctcaattgatatgaataatgcataatatatgtaaagtctaggattcaaactccg 35751369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 41132450 - 41132503
Alignment:
Q  59 ttagctcagttgatttgaataatacataaaatatgtaaagtttggggttcaaac 112  Q
    |||||||| |||||||||| ||||||||||||||| || ||| || ||||||||    
T  41132450 ttagctcaattgatttgaacaatacataaaatatgcaaggttcggagttcaaac 41132503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 136 - 185
Target Start/End: Complemental strand, 47355878 - 47355829
Alignment:
Q  136 gatgtctagggttcgaaccccgacctctgcatataacaatacatttccct 185  Q
    ||||||| |||||||||||||| || |||||||||||||| ||| |||||    
T  47355878 gatgtctggggttcgaaccccggcccctgcatataacaatgcatatccct 47355829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 2366424 - 2366368
Alignment:
Q  138 tgtctagggttcgaaccccgacctctgcatataacaatacatttccctaccaactga 194  Q
    ||||||| ||||||||||||||| |||||||||| ||| ||||  |||| |||||||    
T  2366424 tgtctagagttcgaaccccgacccctgcatataataatgcattgtcctatcaactga 2366368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 7162704 - 7162748
Alignment:
Q  146 gttcgaaccccgacctctgcatataacaatacatttccctaccaa 190  Q
    ||||||||||||||| |||||||||||||| ||| ||||| ||||    
T  7162704 gttcgaaccccgacccctgcatataacaatgcatatccctgccaa 7162748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 10020503 - 10020559
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatg 200  Q
    ||||||||||||| ||| |||||||||||||| ||| |||||  ||||||| |||||    
T  10020503 gggttcgaaccccaacccctgcatataacaatgcatgtccctgtcaactgagctatg 10020559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 171
Target Start/End: Complemental strand, 19828191 - 19828163
Alignment:
Q  143 agggttcgaaccccgacctctgcatataa 171  Q
    |||||||||||||||||||||||||||||    
T  19828191 agggttcgaaccccgacctctgcatataa 19828163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 27047750 - 27047806
Alignment:
Q  145 ggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||||||||||| || |||||||||| ||| ||||  |||||||||||| ||||||    
T  27047750 ggttcgaaccccggcccctgcatataataatgcattgtcctaccaactgagctatgc 27047806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 32919852 - 32919908
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatg 200  Q
    |||||||||||||||||  ||||||||| ||||||||  | |||||||||| |||||    
T  32919852 gggttcgaaccccgacccttgcatataataatacattatcttaccaactgagctatg 32919908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 36316009 - 36316065
Alignment:
Q  145 ggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||||||||||| || |||||||||| ||| ||||  |||||||||||| ||||||    
T  36316009 ggttcgaaccccggcccctgcatataataatgcattatcctaccaactgagctatgc 36316065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 45151388 - 45151436
Alignment:
Q  64 tcagttgatttgaataatacataaaatatgtaaagtttggggttcaaac 112  Q
    |||||||||  ||||||| ||||| |||||||| |||||||||||||||    
T  45151388 tcagttgataggaataatgcataatatatgtaaggtttggggttcaaac 45151436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 135 - 201
Target Start/End: Complemental strand, 27921966 - 27921900
Alignment:
Q  135 agatgtctagggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    |||||||| |||||||||||||| || |||||||||| ||| ||| |||||||||||||| ||||||    
T  27921966 agatgtctggggttcgaaccccggcccctgcatataataatgcatgtccctaccaactgagctatgc 27921900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 116
Target Start/End: Original strand, 32006495 - 32006563
Alignment:
Q  48 tcctcgtcagtttagctcagttgatttgaataatacataaaatatgtaaagtttggggttcaaactccg 116  Q
    ||||||| ||||||||||||||| |  | ||||| ||||| |||||||||||| |||||||||||||||    
T  32006495 tcctcgtgagtttagctcagttggtagggataatgcataatatatgtaaagttcggggttcaaactccg 32006563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 35909197 - 35909253
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatg 200  Q
    |||||||||||||||||||||||||||| |||  |||  ||||||||||||||||||    
T  35909197 gggttcgaaccccgacctctgcatataataatgtattgtcctaccaactgaactatg 35909253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 201
Target Start/End: Complemental strand, 37728998 - 37728943
Alignment:
Q  146 gttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||||||| ||||| |||||||||| ||| ||| |||||||||||||||||||||    
T  37728998 gttcgaacctcgacccctgcatataataatgcatatccctaccaactgaactatgc 37728943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 9924917 - 9924860
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||||||||||||||| |||||||||| ||| | ||  |||||||||||||||||||    
T  9924917 gggttcgaaccccgacccctgcatataataatgcgttgtcctaccaactgaactatgc 9924860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 35230330 - 35230386
Alignment:
Q  145 ggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||||||||||||||  |||||||| |||| ||| |||||||||||||| ||||||    
T  35230330 ggttcgaaccccgacccatgcatatagcaatgcatatccctaccaactgagctatgc 35230386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 199
Target Start/End: Original strand, 13211386 - 13211441
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactat 199  Q
    |||||||||||||||||  ||||||||| ||| ||||  |||||||||||||||||    
T  13211386 gggttcgaaccccgacccatgcatataataatgcattgtcctaccaactgaactat 13211441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 201
Target Start/End: Complemental strand, 15185145 - 15185082
Alignment:
Q  138 tgtctagggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    |||| ||| ||| |||||||||| |||||||||||||| ||| ||||| ||||| |||||||||    
T  15185145 tgtccaggattcaaaccccgacccctgcatataacaatgcatatccctgccaaccgaactatgc 15185082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 201
Target Start/End: Complemental strand, 20610798 - 20610743
Alignment:
Q  146 gttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    |||||||||||| || |||||||||||||| ||| ||||| |||||||| ||||||    
T  20610798 gttcgaaccccggcccctgcatataacaatgcatgtccctgccaactgagctatgc 20610743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 18903822 - 18903760
Alignment:
Q  50 ctcgtcagtttagctcagttgatttgaataatacataaaatatgtaaagtttggggttcaaac 112  Q
    ||||| |||||||||||||||||   |||||| ||||| |||||||| || ||||||||||||    
T  18903822 ctcgtgagtttagctcagttgataaaaataatgcataatatatgtaaggtctggggttcaaac 18903760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 201
Target Start/End: Complemental strand, 26254010 - 26253956
Alignment:
Q  147 ttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||||| |||||| |||||||||| ||||||||   ||||||||||||||||||    
T  26254010 ttcgaactccgacccctgcatataataatacattgttctaccaactgaactatgc 26253956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 36008336 - 36008278
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatt-tccctaccaactgaactatgc 201  Q
    |||||||||||||| || |||||||||||||| |||| ||||| |||||||| ||||||    
T  36008336 gggttcgaaccccggcccctgcatataacaatgcattgtccctgccaactgagctatgc 36008278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 198
Target Start/End: Complemental strand, 43115329 - 43115275
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaacta 198  Q
    ||||||||| | ||||| |||||||||| ||||||||  ||||||||||||||||    
T  43115329 gggttcgaatctcgacccctgcatataataatacattgtcctaccaactgaacta 43115275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 48968244 - 48968302
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatt-tccctaccaactgaactatgc 201  Q
    |||||||||||||| || |||||||||| ||| |||| ||||| |||||||||||||||    
T  48968244 gggttcgaaccccggcccctgcatataataatgcattgtccctgccaactgaactatgc 48968302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 4916161 - 4916214
Alignment:
Q  59 ttagctcagttgatttgaataatacataaaatatgtaaagtttggggttcaaac 112  Q
    |||||||||||| |||||| ||| ||||| ||||||||  ||||||||||||||    
T  4916161 ttagctcagttggtttgaacaatgcataatatatgtaagatttggggttcaaac 4916214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 9084819 - 9084762
Alignment:
Q  145 ggttcgaaccccgacctctgcatataacaatacatt-tccctaccaactgaactatgc 201  Q
    |||||||| ||||||| |||||||||||||| |||| ||||| |||||||| ||||||    
T  9084819 ggttcgaatcccgacccctgcatataacaatgcattgtccctgccaactgagctatgc 9084762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 9172406 - 9172455
Alignment:
Q  145 ggttcgaaccccgacctctgcatataacaatacatttccctaccaactga 194  Q
    |||||||||||||||| |||||||||| ||| ||||  ||||||||||||    
T  9172406 ggttcgaaccccgacccctgcatataataatgcattgtcctaccaactga 9172455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 14202546 - 14202481
Alignment:
Q  47 gtcctcgtcagtttagctcagttgatttgaataatacataaaatatgtaaagtttggggttcaaac 112  Q
    |||||||| || ||| ||||||||||||| ||||| ||||| |||||||| ||  |||||||||||    
T  14202546 gtcctcgtgagcttaactcagttgatttggataatgcataatatatgtaaggtccggggttcaaac 14202481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 15849228 - 15849293
Alignment:
Q  47 gtcctcgtcagtttagctcagttgatttgaataatacataaaatatgtaaagtttggggttcaaac 112  Q
    |||||||| || |||||||||||| | || ||||| ||||||||||| ||||| || |||||||||    
T  15849228 gtcctcgtgagcttagctcagttggtatggataatgcataaaatatgcaaagtctgaggttcaaac 15849293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 20753159 - 20753216
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    |||||||||||||| || || ||||||| ||| ||||| |||||||||||| ||||||    
T  20753159 gggttcgaaccccggcccctacatataataatgcattttcctaccaactgagctatgc 20753216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 35021534 - 35021473
Alignment:
Q  47 gtcctcgtcagtttagctcagttgatttgaataatacataaaatatgtaaagtttggggttc 108  Q
    |||||||| || |||||||||||||| || | ||||||||||||||| || ||| |||||||    
T  35021534 gtcctcgtgagcttagctcagttgatatggacaatacataaaatatgcaaggttcggggttc 35021473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 45350337 - 45350280
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    |||||||||| ||||||||||||||||| ||| || |  |||||||||||| ||||||    
T  45350337 gggttcgaactccgacctctgcatataataatgcactgtcctaccaactgagctatgc 45350280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 45359816 - 45359759
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    |||||||||| ||||||||||||||||| ||| || |  |||||||||||| ||||||    
T  45359816 gggttcgaactccgacctctgcatataataatgcactgtcctaccaactgagctatgc 45359759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 47017980 - 47018037
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    |||||||||||||| || |||||||||| ||| ||||  |||||||||||| ||||||    
T  47017980 gggttcgaaccccggcccctgcatataataatgcattgtcctaccaactgagctatgc 47018037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 49743423 - 49743366
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||||||| |||| || |||||||||| ||| ||| ||||| |||||||||||||||    
T  49743423 gggttcgaatcccggcccctgcatataataatgcatatccctgccaactgaactatgc 49743366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 3544466 - 3544522
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatg 200  Q
    |||||||||||||| ||| ||||||||| ||| ||||  |||||||||||| |||||    
T  3544466 gggttcgaaccccggcctttgcatataataatgcattgtcctaccaactgagctatg 3544522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 124
Target Start/End: Complemental strand, 10564523 - 10564455
Alignment:
Q  56 agtttagctcagttgatttgaataatacataaaatatgtaaagtttggggttcaaactccgcctaccac 124  Q
    ||||||||||||||| | || | ||||||||| |||||||| || || ||||||||| ||| |||||||    
T  10564523 agtttagctcagttggtatggacaatacataatatatgtaaggtctgaggttcaaaccccggctaccac 10564455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 12820433 - 12820497
Alignment:
Q  138 tgtctagggttcgaaccccgacctctgcatataacaatacatt-tccctaccaactgaactatgc 201  Q
    |||| ||||||| |||||||||| |||||||||||||| |||| || || |||||||| ||||||    
T  12820433 tgtccagggttctaaccccgacccctgcatataacaatgcattgtctctgccaactgagctatgc 12820497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 175
Target Start/End: Complemental strand, 25259506 - 25259478
Alignment:
Q  147 ttcgaaccccgacctctgcatataacaat 175  Q
    |||||||||||||||||||||||||||||    
T  25259506 ttcgaaccccgacctctgcatataacaat 25259478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 111
Target Start/End: Complemental strand, 29731442 - 29731382
Alignment:
Q  51 tcgtcagtttagctcagttgatttgaataatacataaaatatgtaaagtttggggttcaaa 111  Q
    |||| ||||||||||||||| || |   ||| |||||||||||||| ||||||||||||||    
T  29731442 tcgtgagtttagctcagttggttggggcaatgcataaaatatgtaatgtttggggttcaaa 29731382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 32885748 - 32885692
Alignment:
Q  145 ggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||||||| |||||| |||||||||| ||| ||||  |||||||||||| ||||||    
T  32885748 ggttcgaactccgacccctgcatataataatgcattgtcctaccaactgagctatgc 32885692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 41492533 - 41492589
Alignment:
Q  145 ggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||||||||||| || |||||||||| ||| ||| ||||| |||||||| ||||||    
T  41492533 ggttcgaaccccggcccctgcatataataatgcatgtccctgccaactgagctatgc 41492589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 11133137 - 11133079
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatt-tccctaccaactgaactatgc 201  Q
    ||||||||||||||||| |||||||||||||| |||| |||||||||||||| ||||||    
T  11133137 gggttcgaaccccgacccctgcatataacaatgcattgtccctaccaactgagctatgc 11133079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 201
Target Start/End: Complemental strand, 44187771 - 44187707
Alignment:
Q  138 tgtctagggttcgaaccccgacctctgcatataacaatacatt-tccctaccaactgaactatgc 201  Q
    ||||| ||||||||||||||||| |||||||||| ||| |||| ||||| |||||||||||||||    
T  44187771 tgtctggggttcgaaccccgacccctgcatataataatgcattatccctgccaactgaactatgc 44187707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 192
Target Start/End: Original strand, 2395009 - 2395054
Alignment:
Q  146 gttcgaaccccgacctctgcatataacaatacatttccctaccaact 192  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||    
T  2395009 gttcgaaccccgacc-ctgcatataacaatacatgtccctaccaact 2395054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 14307728 - 14307778
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactga 194  Q
    ||||||||||| ||||| |||||||||||||| ||| ||||||||||||||    
T  14307728 gggttcgaacctcgacccctgcatataacaatgcatgtccctaccaactga 14307778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 40044113 - 40044171
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatt-tccctaccaactgaactatgc 201  Q
    ||||||||||||||||| |||||||||| |||||||| ||| |||||||||| ||||||    
T  40044113 gggttcgaaccccgacccctgcatataataatacattgtccttaccaactgagctatgc 40044171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 116
Target Start/End: Original strand, 23718929 - 23718998
Alignment:
Q  47 gtcctcgtcagtttagctcagttgatttgaataatacataaaatatgtaaagtttggggttcaaactccg 116  Q
    |||| ||| |||||||||||||||||||||| ||  ||||||||||| || || ||| ||||||||||||    
T  23718929 gtccacgtgagtttagctcagttgatttgaacaacgcataaaatatgcaaggtctggtgttcaaactccg 23718998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 116
Target Start/End: Original strand, 24106601 - 24106670
Alignment:
Q  47 gtcctcgtcagtttagctcagttgatttgaataatacataaaatatgtaaagtttggggttcaaactccg 116  Q
    |||| ||| |||||||||||||||||||||| ||  ||||||||||| || || ||| ||||||||||||    
T  24106601 gtccacgtgagtttagctcagttgatttgaacaacgcataaaatatgcaaggtctggtgttcaaactccg 24106670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 44132599 - 44132652
Alignment:
Q  146 gttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactat 199  Q
    |||||||||||||||||||||||||||||| ||| || || |||||||| ||||    
T  44132599 gttcgaaccccgacctctgcatataacaatgcatgtctctgccaactgagctat 44132652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 10262806 - 10262750
Alignment:
Q  138 tgtctagggttcgaaccccgacctctgcatataacaatacatttccctaccaactga 194  Q
    ||||| ||||||||||||||||| |||||||||| ||| ||||  ||||||||||||    
T  10262806 tgtctggggttcgaaccccgacccctgcatataataatgcattgtcctaccaactga 10262750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 198
Target Start/End: Original strand, 7717613 - 7717666
Alignment:
Q  146 gttcgaaccccgacctctgcatataacaatacatt--tccctaccaactgaacta 198  Q
    ||||||||||||||| |||||||||| ||||||||  ||||||||||||||||||    
T  7717613 gttcgaaccccgacccctgcatataa-aatacatttgtccctaccaactgaacta 7717666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 25050268 - 25050331
Alignment:
Q  138 tgtctagggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||| ||||||||| ||||||| |||||||||| ||| ||||  |||||||||||| ||||||    
T  25050268 tgtctggggttcgaatcccgacccctgcatataataatgcattatcctaccaactgagctatgc 25050331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 36386157 - 36386204
Alignment:
Q  154 cccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||||| |||||||||||||| ||| |||||||||||||| ||||||    
T  36386157 cccgacccctgcatataacaatgcatatccctaccaactgagctatgc 36386204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 201
Target Start/End: Original strand, 37065470 - 37065525
Alignment:
Q  146 gttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||||||||||||| |||||||||||||| ||| ||| ||||||| || ||||||    
T  37065470 gttcgaaccccgaccactgcatataacaatgcatgtccataccaacagagctatgc 37065525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 194
Target Start/End: Original strand, 16028134 - 16028192
Alignment:
Q  136 gatgtctagggttcgaaccccgacctctgcatataacaatacatttccctaccaactga 194  Q
    ||||||| | ||||||||||||||| |||||||||| ||| ||||  ||||||||||||    
T  16028134 gatgtctggagttcgaaccccgaccactgcatataataatgcattgtcctaccaactga 16028192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 201
Target Start/End: Complemental strand, 30877008 - 30876954
Alignment:
Q  147 ttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||||| |||||| ||||||||||||||||||  ||||||||||| | ||||||    
T  30877008 ttcgaactccgacccctgcatataacaatacatgaccctaccaactaagctatgc 30876954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 194
Target Start/End: Complemental strand, 45523726 - 45523676
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactga 194  Q
    ||||||||||||||||| ||||||||||  |||||||  ||||||||||||    
T  45523726 gggttcgaaccccgacccctgcatataattatacattgtcctaccaactga 45523676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 346191 - 346142
Alignment:
Q  47 gtcctcgtcagtttagctcagttgatttgaataatacataaaatatgtaa 96  Q
    |||||||| || |||||||||||| |||||||||| ||||| ||||||||    
T  346191 gtcctcgtgagcttagctcagttggtttgaataatgcataatatatgtaa 346142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 580817 - 580874
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    |||||||||||||| || |||||||||| ||| ||||  |||||||||||| ||||||    
T  580817 gggttcgaaccccggcccctgcatataataatgcattgtcctaccaactgagctatgc 580874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 1244630 - 1244573
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||||||||||| ||| ||||||||| ||||  || ||||| |||||||||||||||    
T  1244630 gggttcgaacccccacccctgcatatagcaatgtatgtccctgccaactgaactatgc 1244573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 5028862 - 5028915
Alignment:
Q  59 ttagctcagttgatttgaataatacataaaatatgtaaagtttggggttcaaac 112  Q
    ||||||||||||||| | | ||| ||||| |||||||| |||||||||||||||    
T  5028862 ttagctcagttgattaggacaatgcataatatatgtaaggtttggggttcaaac 5028915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 7086314 - 7086257
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||||||| |||| || |||||||||| ||| |||| ||||||||||||| ||||||    
T  7086314 gggttcgaatcccggcccctgcatataataatgcattgccctaccaactgagctatgc 7086257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 17115578 - 17115635
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    |||||||||| ||||||| ||||||||| |||||| |  |||||||||||| ||||||    
T  17115578 gggttcgaactccgacctttgcatataataatacagtgtcctaccaactgagctatgc 17115635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 17413399 - 17413350
Alignment:
Q  47 gtcctcgtcagtttagctcagttgatttgaataatacataaaatatgtaa 96  Q
    |||||||| |||||| |||||||| || ||||||| ||||||||||||||    
T  17413399 gtcctcgtgagtttaactcagttggttggaataatgcataaaatatgtaa 17413350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 43424665 - 43424718
Alignment:
Q  59 ttagctcagttgatttgaataatacataaaatatgtaaagtttggggttcaaac 112  Q
    ||||||||||||||| ||| ||| ||||||||||| |||||| || ||||||||    
T  43424665 ttagctcagttgattggaacaatgcataaaatatgcaaagttcggagttcaaac 43424718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 146 - 175
Target Start/End: Complemental strand, 45314469 - 45314440
Alignment:
Q  146 gttcgaaccccgacctctgcatataacaat 175  Q
    ||||||||||||||||||||||||||||||    
T  45314469 gttcgaaccccgacctctgcatataacaat 45314440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 18007310 - 18007254
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatg 200  Q
    ||||| ||||||| |||| | ||||||| ||||||||  ||||||||||||||||||    
T  18007310 gggtttgaaccccaacctttacatataataatacattgtcctaccaactgaactatg 18007254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 24034088 - 24034144
Alignment:
Q  145 ggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    |||||||||||||||| |||||||||| ||| ||||  |||||||||| | ||||||    
T  24034088 ggttcgaaccccgacccctgcatataataatgcattgtcctaccaactaagctatgc 24034144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 26975332 - 26975384
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaac 196  Q
    |||||||||||||  |||||||||||| |||| ||| ||||| ||||||||||    
T  26975332 gggttcgaaccccagcctctgcatatagcaatgcatgtccctgccaactgaac 26975384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 40)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 39139053 - 39138996
Alignment:
Q  59 ttagctcagttgatttgaataatacataaaatatgtaaagtttggggttcaaactccg 116  Q
    |||||||||||| ||| |||||| |||||||||||||| ||| |||||||||||||||    
T  39139053 ttagctcagttggttttaataatgcataaaatatgtaaggttcggggttcaaactccg 39138996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 29937270 - 29937214
Alignment:
Q  145 ggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||||||| ||| || |||||||||||||||||| |||||||||||||| ||||||    
T  29937270 ggttcgaactccggcccctgcatataacaatacatgtccctaccaactgagctatgc 29937214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 201
Target Start/End: Complemental strand, 26657923 - 26657860
Alignment:
Q  138 tgtctagggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||| ||||||||||||||  | |||||||||||||| ||| |||||||||||||| ||||||    
T  26657923 tgtctggggttcgaaccccggtccctgcatataacaatgcatgtccctaccaactgagctatgc 26657860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 199
Target Start/End: Complemental strand, 36593263 - 36593200
Alignment:
Q  136 gatgtctagggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactat 199  Q
    |||||||| | |||||||||| ||||||| |||||||||| ||| |||||||||||||| ||||    
T  36593263 gatgtctaagattcgaaccccaacctctgtatataacaatgcatgtccctaccaactgagctat 36593200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 8137929 - 8137994
Alignment:
Q  47 gtcctcgtcagtttagctcagttgatttgaataatacataaaatatgtaaagtttggggttcaaac 112  Q
    |||||||| || |||||||||||| | || | ||| ||||||||||| ||||||||||||||||||    
T  8137929 gtcctcgtaagcttagctcagttggtatggacaatgcataaaatatgcaaagtttggggttcaaac 8137994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 39433404 - 39433465
Alignment:
Q  47 gtcctcgtcagtttagctcagttgatttgaataatacataaaatatgtaaagtttggggttc 108  Q
    |||||||| || |||||||||||||| |||| ||||||||||||||| || || ||||||||    
T  39433404 gtcctcgtgagcttagctcagttgatatgaacaatacataaaatatgcaaggtctggggttc 39433465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 14011073 - 14011129
Alignment:
Q  145 ggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||||||| ||| || |||||||||||||| ||| ||||| |||||||||||||||    
T  14011073 ggttcgaactccggcccctgcatataacaatgcatgtccctgccaactgaactatgc 14011129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 201
Target Start/End: Complemental strand, 9525024 - 9524961
Alignment:
Q  138 tgtctagggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||| |||||||||||||| || |||||||||| ||| ||||  |||||||||||| ||||||    
T  9525024 tgtctggggttcgaaccccggcccctgcatataataatgcattgtcctaccaactgagctatgc 9524961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 201
Target Start/End: Complemental strand, 14012670 - 14012615
Alignment:
Q  147 ttcgaaccccgacctctgcatataacaatacatt-tccctaccaactgaactatgc 201  Q
    ||||||||||| || |||||||||||||| |||| ||||| |||||||||||||||    
T  14012670 ttcgaaccccggcccctgcatataacaatgcattgtccctgccaactgaactatgc 14012615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 24608511 - 24608574
Alignment:
Q  138 tgtctagggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||| |||||||||||||| || |||||||||| ||| ||||  |||||||||||| ||||||    
T  24608511 tgtctggggttcgaaccccggcccctgcatataataatgcattgtcctaccaactgagctatgc 24608574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 201
Target Start/End: Original strand, 43468741 - 43468796
Alignment:
Q  146 gttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||||||||||||| || ||||||||||| ||||  |||||||||||| ||||||    
T  43468741 gttcgaaccccgacccctacatataacaatgcattgtcctaccaactgagctatgc 43468796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 216184 - 216238
Alignment:
Q  147 ttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||||||| |||||||||||||||||||  || ||||| |||||||| ||||||    
T  216184 ttcgaaccctgacctctgcatataacaatgtatgtccctgccaactgagctatgc 216238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 220399 - 220453
Alignment:
Q  147 ttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||||||| ||||||||||||||||| | ||| ||||| |||||||| ||||||    
T  220399 ttcgaaccctgacctctgcatataacattgcatgtccctgccaactgagctatgc 220453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 689554 - 689608
Alignment:
Q  147 ttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||||||| ||||||||||||||||| | ||| ||||| |||||||| ||||||    
T  689554 ttcgaaccctgacctctgcatataacattgcatgtccctgccaactgagctatgc 689608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 692744 - 692798
Alignment:
Q  147 ttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||||||| |||||||||||||||||||  || ||||| |||||||| ||||||    
T  692744 ttcgaaccctgacctctgcatataacaatgtatgtccctgccaactgagctatgc 692798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 696953 - 697007
Alignment:
Q  147 ttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||||||| |||||||||||||||||||  || ||||| |||||||| ||||||    
T  696953 ttcgaaccctgacctctgcatataacaatgtatgtccctgccaactgagctatgc 697007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 729807 - 729861
Alignment:
Q  147 ttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||||||| |||||||||||||||||||  || ||||| |||||||| ||||||    
T  729807 ttcgaaccctgacctctgcatataacaatgtatgtccctgccaactgagctatgc 729861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 734022 - 734076
Alignment:
Q  147 ttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||||||| ||||||||||||||||| | ||| ||||| |||||||| ||||||    
T  734022 ttcgaaccctgacctctgcatataacattgcatgtccctgccaactgagctatgc 734076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 853702 - 853756
Alignment:
Q  147 ttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||||||| |||||||||||||||||||  || ||||| |||||||| ||||||    
T  853702 ttcgaaccctgacctctgcatataacaatgtatgtccctgccaactgagctatgc 853756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 857918 - 857972
Alignment:
Q  147 ttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||||||| ||||||||||||||||| | ||| ||||| |||||||| ||||||    
T  857918 ttcgaaccctgacctctgcatataacattgcatgtccctgccaactgagctatgc 857972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 194
Target Start/End: Complemental strand, 18577174 - 18577124
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactga 194  Q
    ||||| ||||||||||| |||||||||||||||||| |||||  |||||||    
T  18577174 gggtttgaaccccgacccctgcatataacaatacatgtccctgtcaactga 18577124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 198
Target Start/End: Original strand, 26192722 - 26192776
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaacta 198  Q
    |||||||||||||||||||||||||||| |    || ||||||||||||||||||    
T  26192722 gggttcgaaccccgacctctgcatataatatgcaatatccctaccaactgaacta 26192776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 113
Target Start/End: Original strand, 40316850 - 40316916
Alignment:
Q  47 gtcctcgtcagtttagctcagttgatttgaataatacataaaatatgtaaagtttggggttcaaact 113  Q
    |||||||| || ||| |||||||||| |||||||| ||||| |||||||||||| ||  ||||||||    
T  40316850 gtcctcgtgagcttatctcagttgatatgaataatgcataatatatgtaaagttcggatttcaaact 40316916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 15042399 - 15042456
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    |||||||||||||| || |||||||||| ||| ||||  |||||||||||| ||||||    
T  15042399 gggttcgaaccccggcccctgcatataataatgcattgtcctaccaactgagctatgc 15042456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 18638106 - 18638159
Alignment:
Q  59 ttagctcagttgatttgaataatacataaaatatgtaaagtttggggttcaaac 112  Q
    |||||||||||| || ||| ||| ||||||||||| ||||| ||||||||||||    
T  18638106 ttagctcagttggttggaacaatgcataaaatatgcaaagtatggggttcaaac 18638159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 24195255 - 24195312
Alignment:
Q  59 ttagctcagttgatttgaataatacataaaatatgtaaagtttggggttcaaactccg 116  Q
    |||||||||||||| |||| ||||||||| ||||| || ||  |||||||||||||||    
T  24195255 ttagctcagttgatatgaacaatacataatatatgcaaggtccggggttcaaactccg 24195312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 25119269 - 25119212
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||||||||||| ||| |||||||||| ||| ||||  |||||||| ||||||||||    
T  25119269 gggttcgaaccccaacccctgcatataataatgcattgtcctaccaattgaactatgc 25119212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 28580953 - 28581002
Alignment:
Q  62 gctcagttgatttgaataatacataaaatatgtaaagtttggggttcaaa 111  Q
    ||||||||| | |||||||| |||||||||||||| ||| ||||||||||    
T  28580953 gctcagttggtatgaataatgcataaaatatgtaaggttcggggttcaaa 28581002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 28979087 - 28979030
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    |||||||||  |||||| || ||||||||||| ||| |||||| ||||||||||||||    
T  28979087 gggttcgaattccgacccctacatataacaatgcatgtccctatcaactgaactatgc 28979030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 175
Target Start/End: Complemental strand, 33982257 - 33982220
Alignment:
Q  138 tgtctagggttcgaaccccgacctctgcatataacaat 175  Q
    ||||| ||||||||||||||||| ||||||||||||||    
T  33982257 tgtctggggttcgaaccccgacccctgcatataacaat 33982220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 42688117 - 42688060
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||||||| ||||||| || ||||||| ||| ||||  |||||||||||||||||||    
T  42688117 gggttcgaatcccgacccctacatataataatgcattgtcctaccaactgaactatgc 42688060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 43847763 - 43847706
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    |||||||||||||| || |||||||||| ||| ||||  |||||||||||| ||||||    
T  43847763 gggttcgaaccccggcccctgcatataataatgcattgtcctaccaactgagctatgc 43847706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 2376578 - 2376522
Alignment:
Q  145 ggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||||||||| |||| |||||||||| ||| ||||  |||||||| ||||||||||    
T  2376578 ggttcgaacccggacccctgcatataataatgcattgtcctaccaattgaactatgc 2376522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 4293952 - 4293908
Alignment:
Q  136 gatgtctagggttcgaaccccgacctctgcatataacaatacatt 180  Q
    ||||||| ||||||||||||||||| |||||||||| ||| ||||    
T  4293952 gatgtctggggttcgaaccccgacccctgcatataataatgcatt 4293908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 111
Target Start/End: Original strand, 4479740 - 4479800
Alignment:
Q  51 tcgtcagtttagctcagttgatttgaataatacataaaatatgtaaagtttggggttcaaa 111  Q
    |||| |||||| ||||| || || ||| ||| |||||||||| ||||||||||||||||||    
T  4479740 tcgtgagtttaactcagctggttggaacaatgcataaaatatataaagtttggggttcaaa 4479800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 114
Target Start/End: Complemental strand, 5330116 - 5330052
Alignment:
Q  50 ctcgtcagtttagctcagttgatttgaataatacataaaatatgtaaagtttggggttcaaactc 114  Q
    ||||| ||||||| |||||||||| ||| ||| |||||||||||||| ||  || ||||||||||    
T  5330116 ctcgtaagtttagttcagttgattagaacaatgcataaaatatgtaaggtgcggagttcaaactc 5330052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 115
Target Start/End: Complemental strand, 8544666 - 8544598
Alignment:
Q  47 gtcctcgtcagtttagctcagttgatttgaataatacataaaatatgtaaagtttggggttcaaactcc 115  Q
    |||||||| || |||||||||| | || |||||||  |||||||||| || || |||||||||||||||    
T  8544666 gtcctcgtgagcttagctcagtcggttggaataatgtataaaatatgcaaggtctggggttcaaactcc 8544598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 13762547 - 13762603
Alignment:
Q  145 ggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||||||| | |||| |||||||||| ||| ||||  |||||||||||||||||||    
T  13762547 ggttcgaacactgacccctgcatataataatgcattgtcctaccaactgaactatgc 13762603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 192
Target Start/End: Original strand, 22847296 - 22847344
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaact 192  Q
    ||||||||||| ||||| |||||||||||||| ||| ||||| ||||||    
T  22847296 gggttcgaacctcgacccctgcatataacaatgcatgtccctgccaact 22847344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 39432363 - 39432419
Alignment:
Q  145 ggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    |||||||||||| ||| |||||||||||| | ||| ||||| |||||||| ||||||    
T  39432363 ggttcgaaccccaacccctgcatataacattgcatgtccctgccaactgagctatgc 39432419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 138 - 201
Target Start/End: Complemental strand, 37304001 - 37303937
Alignment:
Q  138 tgtctagggttcgaaccccgacctctgcatataacaatacatt-tccctaccaactgaactatgc 201  Q
    |||| |||||||||||||||||| |||||||||| |||||||| ||||| |||||||| ||||||    
T  37304001 tgtccagggttcgaaccccgacccctgcatataataatacattgtccctgccaactgagctatgc 37303937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 11246520 - 11246585
Alignment:
Q  136 gatgtctagggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||||| ||||| || |||||||| |||||||||||||| ||| ||||| |||||||| ||||||    
T  11246520 gatgtctggggtttgagccccgacccctgcatataacaatgcatgtccctgccaactgagctatgc 11246585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 18872582 - 18872525
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||||||||||||||| |||||||||| ||| ||||  |||||||||||| ||||||    
T  18872582 gggttcgaaccccgacccctgcatataataatgcattgtcctaccaactgagctatgc 18872525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 7147054 - 7147110
Alignment:
Q  145 ggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    |||||||||||||||| |||||||||| ||| ||| ||| |||||||||| ||||||    
T  7147054 ggttcgaaccccgacccctgcatataataatgcatgtccttaccaactgagctatgc 7147110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 2411322 - 2411385
Alignment:
Q  138 tgtctagggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||| |||||||||| ||| || |||||||||| ||||||||  |||||||||||| ||||||    
T  2411322 tgtctggggttcgaactccggcccctgcatataataatacattgtcctaccaactgagctatgc 2411385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 201
Target Start/End: Complemental strand, 25660979 - 25660916
Alignment:
Q  138 tgtctagggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||| ||||||||| |||| || |||||||||||||| ||| ||||| |||||||| ||||||    
T  25660979 tgtctggggttcgaatcccggcccctgcatataacaatgcatatccctgccaactgagctatgc 25660916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 36741995 - 36742058
Alignment:
Q  138 tgtctagggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    |||| |||||||||||||||| | |||||||||||||| ||| || || |||||||| ||||||    
T  36741995 tgtccagggttcgaaccccgatccctgcatataacaattcatgtctctgccaactgagctatgc 36742058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 201
Target Start/End: Complemental strand, 38040325 - 38040270
Alignment:
Q  146 gttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||||||| ||||| |||||||||||||| ||| ||||| |||||||| ||||||    
T  38040325 gttcgaacctcgacccctgcatataacaatgcatgtccctgccaactgagctatgc 38040270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 199
Target Start/End: Original strand, 42781628 - 42781683
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactat 199  Q
    ||||||||||||||| | |||||||||||||| ||| ||||| |||||||| ||||    
T  42781628 gggttcgaaccccgaaccctgcatataacaatgcatgtccctgccaactgagctat 42781683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 199
Target Start/End: Complemental strand, 30733179 - 30733125
Alignment:
Q  146 gttcgaaccccgacctctgcatataacaatacatt-tccctaccaactgaactat 199  Q
    |||||||||| ||||||||||||||| |||||||| ||||| |||||||| ||||    
T  30733179 gttcgaaccctgacctctgcatataataatacattgtccctgccaactgagctat 30733125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 1809038 - 1809103
Alignment:
Q  47 gtcctcgtcagtttagctcagttgatttgaataatacataaaatatgtaaagtttggggttcaaac 112  Q
    |||||||| ||||||||||| ||| |||| | ||| ||||| ||||||||  ||||||||||||||    
T  1809038 gtcctcgtgagtttagctcaattggtttggaaaatgcataatatatgtaagatttggggttcaaac 1809103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 116
Target Start/End: Original strand, 2839792 - 2839861
Alignment:
Q  47 gtcctcgtcagtttagctcagttgatttgaataatacataaaatatgtaaagtttggggttcaaactccg 116  Q
    |||||||| || |||||||||||| |||| ||||| ||||| ||||  || ||| |||||||||||||||    
T  2839792 gtcctcgtgagcttagctcagttggtttggataatgcataatatatccaaggttcggggttcaaactccg 2839861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 108
Target Start/End: Original strand, 3156528 - 3156589
Alignment:
Q  47 gtcctcgtcagtttagctcagttgatttgaataatacataaaatatgtaaagtttggggttc 108  Q
    |||||||| |||||| |||||||| | || ||||| ||||||||||||||  ||||||||||    
T  3156528 gtcctcgtgagtttaactcagttggtatggataatgcataaaatatgtaagatttggggttc 3156589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 3535970 - 3536027
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    |||||||||||||| |  ||| |||||||||| ||| ||||| |||||||||||||||    
T  3535970 gggttcgaaccccggctcctgtatataacaatgcatgtccctgccaactgaactatgc 3536027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 194
Target Start/End: Complemental strand, 3741018 - 3740967
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatt--tccctaccaactga 194  Q
    ||||||||||||||||| |||||||||| ||||||||  ||||||||||||||    
T  3741018 gggttcgaaccccgacccctgcatataa-aatacatttgtccctaccaactga 3740967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 112
Target Start/End: Complemental strand, 5551336 - 5551283
Alignment:
Q  59 ttagctcagttgatttgaataatacataaaatatgtaaagtttggggttcaaac 112  Q
    |||||||||||| || ||| ||| ||||||||||| || |||||||||||||||    
T  5551336 ttagctcagttggttggaacaatgcataaaatatgcaaggtttggggttcaaac 5551283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 201
Target Start/End: Complemental strand, 13862186 - 13862129
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    |||||||||| |||||| |||||||||||||| ||| ||| |  ||||||||||||||    
T  13862186 gggttcgaactccgacccctgcatataacaatgcatatccatgtcaactgaactatgc 13862129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 24498578 - 24498627
Alignment:
Q  47 gtcctcgtcagtttagctcagttgatttgaataatacataaaatatgtaa 96  Q
    |||||||| || ||| |||||||||| |||||||| ||||||||||||||    
T  24498578 gtcctcgtgagcttaactcagttgatatgaataatgcataaaatatgtaa 24498627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 27440332 - 27440389
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||||||||| ||||| |||||||||| ||| ||||  |||||||||||| ||||||    
T  27440332 gggttcgaacctcgaccactgcatataataatgcattgtcctaccaactgagctatgc 27440389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 175
Target Start/End: Original strand, 38129041 - 38129078
Alignment:
Q  138 tgtctagggttcgaaccccgacctctgcatataacaat 175  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  38129041 tgtccagggttcgaaccccgacccctgcatataacaat 38129078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 194
Target Start/End: Complemental strand, 33800960 - 33800904
Alignment:
Q  138 tgtctagggttcgaaccccgacctctgcatataacaatacatttccctaccaactga 194  Q
    ||||| |||||||||||||| || |||||||||| ||| ||||  ||||||||||||    
T  33800960 tgtctggggttcgaaccccggcccctgcatataataatgcattgtcctaccaactga 33800904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 200
Target Start/End: Original strand, 38040130 - 38040182
Alignment:
Q  148 tcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatg 200  Q
    ||||||||||| | |||||||||||||| ||| ||| | ||||||||||||||    
T  38040130 tcgaaccccgaaccctgcatataacaatgcatgtccttgccaactgaactatg 38040182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 41405123 - 41405179
Alignment:
Q  145 ggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||| ||||||||||  ||||||||||||| ||| |||||  ||||||||||||||    
T  41405123 ggttccaaccccgacccttgcatataacaatgcatgtccctgtcaactgaactatgc 41405179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 42801475 - 42801531
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatg 200  Q
    ||||||||||||||||| |||||||||| ||| ||||  | |||||||||| |||||    
T  42801475 gggttcgaaccccgacccctgcatataataatgcattatcataccaactgagctatg 42801531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 77 - 123
Target Start/End: Original strand, 39498382 - 39498428
Alignment:
Q  77 ataatacataaaatatgtaaagtttggggttcaaactccgcctacca 123  Q
    |||||||||||||||||||| |||||| |||||||||||| ||||||    
T  39498382 ataatacataaaatatgtaaggtttggagttcaaactccgactacca 39498428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 199
Target Start/End: Complemental strand, 43774252 - 43774190
Alignment:
Q  138 tgtctagggttcgaaccccgacctctgcatataacaatacatt-tccctaccaactgaactat 199  Q
    ||||| ||||||||||||||||| |||||||||||||| |||| ||||| |||||||| ||||    
T  43774252 tgtctggggttcgaaccccgacccctgcatataacaatgcattgtccctgccaactgagctat 43774190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 51412027 - 51412081
Alignment:
Q  147 ttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    |||||||||||||  |||||||||||||| ||| ||||| |||||||||||||||    
T  51412027 ttcgaaccccgactcctgcatataacaatgcatgtccctgccaactgaactatgc 51412081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 33404234 - 33404291
Alignment:
Q  59 ttagctcagttgatttgaataatacataaaatatgtaaagtttggggttcaaactccg 116  Q
    |||||||||||||| || | ||||||||| |||||||||||||| |||||||| ||||    
T  33404234 ttagctcagttgatatggacaatacataatatatgtaaagtttgaggttcaaattccg 33404291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 201
Target Start/End: Original strand, 42271049 - 42271104
Alignment:
Q  146 gttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    |||||||||||| || |||||||||||||| ||||  |||||||||||| ||||||    
T  42271049 gttcgaaccccggcccctgcatataacaatgcattgtcctaccaactgagctatgc 42271104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 200
Target Start/End: Original strand, 43566831 - 43566886
Alignment:
Q  145 ggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatg 200  Q
    |||||||||||||||| |||||||||| ||| ||||  |||||||||||| |||||    
T  43566831 ggttcgaaccccgacccctgcatataataatgcattgtcctaccaactgagctatg 43566886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 185
Target Start/End: Complemental strand, 27119334 - 27119296
Alignment:
Q  147 ttcgaaccccgacctctgcatataacaatacatttccct 185  Q
    ||||||||||||||||||||||||||||| ||| |||||    
T  27119334 ttcgaaccccgacctctgcatataacaatgcatgtccct 27119296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 194
Target Start/End: Complemental strand, 41121932 - 41121882
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactga 194  Q
    ||||| |||||||||||||||||||||| ||| ||||  ||||||||||||    
T  41121932 gggtttgaaccccgacctctgcatataataatgcattgtcctaccaactga 41121882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 194
Target Start/End: Complemental strand, 49146145 - 49146095
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactga 194  Q
    ||||||||||||||||| |||||||||| ||| ||||  ||||||||||||    
T  49146145 gggttcgaaccccgacccctgcatataataatgcattgtcctaccaactga 49146095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 146 - 199
Target Start/End: Original strand, 4045670 - 4045723
Alignment:
Q  146 gttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactat 199  Q
    ||||||||| ||||| |||||||||||||| ||| |||||  ||||||||||||    
T  4045670 gttcgaacctcgacccctgcatataacaatgcatgtccctgtcaactgaactat 4045723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 116
Target Start/End: Complemental strand, 4332734 - 4332665
Alignment:
Q  47 gtcctcgtcagtttagctcagttgatttgaataatacataaaatatgtaaagtttggggttcaaactccg 116  Q
    |||||||| || |||||||||||| |||||||||| ||||| ||||  || ||  |||||||||||||||    
T  4332734 gtcctcgtgagcttagctcagttggtttgaataatgcataatatatccaaggtccggggttcaaactccg 4332665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 4668678 - 4668743
Alignment:
Q  47 gtcctcgtcagtttagctcagttgatttgaataatacataaaatatgtaaagtttggggttcaaac 112  Q
    |||||||| |||||| ||| |||  |||||| ||| ||||| ||||||||||||||| ||||||||    
T  4668678 gtcctcgtgagtttaactcggttagtttgaacaatgcataatatatgtaaagtttggagttcaaac 4668743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 136 - 201
Target Start/End: Complemental strand, 8475484 - 8475419
Alignment:
Q  136 gatgtctagggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||||| || ||| ||||||||||||||||||| | ||| ||||  |||||||||||| ||||||    
T  8475484 gatgtctgggattcaaaccccgacctctgcatatcataatgcattgtcctaccaactgagctatgc 8475419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 17755127 - 17755184
Alignment:
Q  59 ttagctcagttgatttgaataatacataaaatatgtaaagtttggggttcaaactccg 116  Q
    ||||||||||||||  ||| ||||||||| |||||||| ||| |||||||||| ||||    
T  17755127 ttagctcagttgataggaacaatacataatatatgtaaggttcggggttcaaattccg 17755184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 19056447 - 19056504
Alignment:
Q  59 ttagctcagttgatttgaataatacataaaatatgtaaagtttggggttcaaactccg 116  Q
    ||||||||||||||  ||| ||||||||| |||||||| ||| |||||||||| ||||    
T  19056447 ttagctcagttgataggaacaatacataatatatgtaaggttcggggttcaaattccg 19056504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 112
Target Start/End: Complemental strand, 32843329 - 32843264
Alignment:
Q  47 gtcctcgtcagtttagctcagttgatttgaataatacataaaatatgtaaagtttggggttcaaac 112  Q
    |||||||| || |||||||||||| |||| | ||| ||||||||||| || || ||||||||||||    
T  32843329 gtcctcgtgagcttagctcagttggtttggacaatgcataaaatatgcaaggtctggggttcaaac 32843264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 63 - 112
Target Start/End: Original strand, 35557103 - 35557152
Alignment:
Q  63 ctcagttgatttgaataatacataaaatatgtaaagtttggggttcaaac 112  Q
    ||||||||||| | ||||| |||||||||||||| || ||||||||||||    
T  35557103 ctcagttgattgggataatgcataaaatatgtaaggtctggggttcaaac 35557152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 115
Target Start/End: Original strand, 53852728 - 53852797
Alignment:
Q  46 agtcctcgtcagtttagctcagttgatttgaataatacataaaatatgtaaagtttggggttcaaactcc 115  Q
    ||||||||| |||||||||||||||   | || ||| ||||| ||||||||| |||||| ||||||||||    
T  53852728 agtcctcgtaagtttagctcagttggcataaacaatgcataatatatgtaaaatttgggattcaaactcc 53852797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 6054261 - 6054305
Alignment:
Q  146 gttcgaaccccgacctctgcatataacaatacatttccctaccaa 190  Q
    |||||||| ||||||||||||| ||||||||||| ||||| ||||    
T  6054261 gttcgaactccgacctctgcatctaacaatacatgtccctgccaa 6054305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 199
Target Start/End: Complemental strand, 12712030 - 12711974
Alignment:
Q  144 gggttcgaac-cccgacctctgcatataacaatacatttccctaccaactgaactat 199  Q
    |||||||||| ||||||| |||||||||| ||| ||| | |||||||||||||||||    
T  12712030 gggttcgaactcccgacccctgcatataaaaatgcatgttcctaccaactgaactat 12711974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 178
Target Start/End: Complemental strand, 13748665 - 13748633
Alignment:
Q  146 gttcgaaccccgacctctgcatataacaataca 178  Q
    |||||||||||||||||| ||||||||||||||    
T  13748665 gttcgaaccccgacctctacatataacaataca 13748633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 16874225 - 16874281
Alignment:
Q  145 ggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    |||||||||| || || |||||||||||||| ||| ||||| |||||||| ||||||    
T  16874225 ggttcgaacctcggcccctgcatataacaatgcatgtccctgccaactgagctatgc 16874281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 34407118 - 34407174
Alignment:
Q  138 tgtctagggttcgaaccccgacctctgcatataacaatacatttccctaccaactga 194  Q
    ||||| ||||||||||||| ||| |||||||||| ||| ||| ||||| ||||||||    
T  34407118 tgtctggggttcgaaccccaacccctgcatataataatgcatgtccctgccaactga 34407174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 40786340 - 40786284
Alignment:
Q  145 ggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||||||||||||||  ||||||||| ||| ||||  |||||||||||| ||||||    
T  40786340 ggttcgaaccccgacccatgcatataataatgcattgtcctaccaactgagctatgc 40786284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 53468008 - 53467953
Alignment:
Q  145 ggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||||||||||| || |||||||||| ||| ||||  |||||||||||||||||||    
T  53468008 ggttcgaaccccgccc-ctgcatataataatgcattgtcctaccaactgaactatgc 53467953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 41800 - 41857
Alignment:
Q  144 gggttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||||||| ||||||| |||||||||||||| ||||  |||||||||||| ||||||    
T  41800 gggttcgaatcccgacccctgcatataacaatccattgtcctaccaactgagctatgc 41857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 118813 - 118878
Alignment:
Q  47 gtcctcgtcagtttagctcagttgatttgaataatacataaaatatgtaaagtttggggttcaaac 112  Q
    |||||||| || |||||||||||| |||||| ||| |||||||||||||| || ||| ||||||||    
T  118813 gtcctcgtgagcttagctcagttggtttgaacaatgcataaaatatgtaaggtctggagttcaaac 118878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 201
Target Start/End: Original strand, 34070 - 34124
Alignment:
Q  147 ttcgaaccccgacctctgcatataacaatacatttccctaccaactgaactatgc 201  Q
    ||||||||||| || |||||||||||||| ||| ||||| |||||||| ||||||    
T  34070 ttcgaaccccggcccctgcatataacaatgcatgtccctgccaactgagctatgc 34124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 17959 - 18023
Alignment:
Q  138 tgtctagggttcgaaccccgacctctgcatataacaatacatt-tccctaccaactgaactatgc 201  Q
    ||||| |||||||||||||  || |||||||||||||| |||| |||||||||| ||| ||||||    
T  17959 tgtctggggttcgaaccccagcccctgcatataacaatgcattgtccctaccaattgagctatgc 18023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University