View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2746_high_5 (Length: 578)
Name: NF2746_high_5
Description: NF2746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2746_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 312 - 558
Target Start/End: Complemental strand, 4504450 - 4504204
Alignment:
| Q |
312 |
cattgttcttaaacactcctttctgaaagggaaatgcaaaaggatcatttacataatttttaaactgtctctgaagtttcttttcttctgttatcgccat |
411 |
Q |
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| T |
4504450 |
cattgttcttaaacactcctttctgaaagggaaatgcaaaaggatcatttacataatttttaaactgtctctgaagtttc-tttcttctgttatcgccat |
4504352 |
T |
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| Q |
412 |
ctggatacttgtaacacatagagttgaagaataagattgaagnnnnnnntaaagaaaagttgcaactaagggaagagactctactgaatggaatctctaa |
511 |
Q |
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| T |
4504351 |
ctggatacttgtaacacatagagttgaagaataagattgaagaaaaaaataaagaaaagttgcaactaagggaagagactctactgaatggaatctctaa |
4504252 |
T |
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| Q |
512 |
agacattatctg-aaaattgaccaattaactgcttgtgttgtggggcc |
558 |
Q |
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| T |
4504251 |
agacattatctgaaaaattgaccaattaactgcttgtgttatggggcc |
4504204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 13 - 192
Target Start/End: Complemental strand, 4504743 - 4504568
Alignment:
| Q |
13 |
aatatcccaacactaagaagaaattaaagtaaacatataagataaaacttcttgaatttgtttcnnnnnnnnnnnnagggaaaaacttgaatttgttaaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4504743 |
aatatcccaacactaagaagaaattaaagtaaacatataagataaaacttcttgaatttgtttc-tttttttttttagggaaaaacttgaatttgttaaa |
4504645 |
T |
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| Q |
113 |
aaagttaattcagttgaagcagcttttccatnnnnnnnnnnncctgagaatattgacgagacaatagcacacaataattt |
192 |
Q |
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| T |
4504644 |
aaagttaattcagttgaagcagcttttccat---aaaaaaaacctgagaatattgacgagacaatagcacacaataattt |
4504568 |
T |
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