View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2746_low_11 (Length: 404)

Name: NF2746_low_11
Description: NF2746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2746_low_11
NF2746_low_11
[»] chr4 (5 HSPs)
chr4 (1-395)||(49272412-49272798)
chr4 (110-257)||(23406518-23406672)
chr4 (256-394)||(52723872-52724007)
chr4 (128-191)||(4848715-4848778)
chr4 (128-191)||(5198927-5198990)
[»] chr1 (4 HSPs)
chr1 (110-395)||(12900713-12901014)
chr1 (255-394)||(46502783-46502922)
chr1 (133-219)||(42048901-42048987)
chr1 (255-395)||(4520704-4520840)
[»] chr7 (3 HSPs)
chr7 (255-394)||(39773357-39773496)
chr7 (253-300)||(29346786-29346833)
chr7 (220-257)||(29346841-29346878)
[»] chr2 (3 HSPs)
chr2 (284-395)||(12324589-12324700)
chr2 (110-208)||(11183882-11183981)
chr2 (220-258)||(19261761-19261799)
[»] chr6 (5 HSPs)
chr6 (110-217)||(30062980-30063087)
chr6 (110-219)||(10086065-10086175)
chr6 (135-214)||(165736-165814)
chr6 (258-351)||(6033315-6033408)
chr6 (110-190)||(6919323-6919404)
[»] scaffold0274 (1 HSPs)
scaffold0274 (255-394)||(5230-5369)
[»] scaffold0271 (1 HSPs)
scaffold0271 (255-394)||(3921-4060)
[»] chr8 (5 HSPs)
chr8 (284-392)||(37263989-37264096)
chr8 (220-257)||(17011644-17011681)
chr8 (220-257)||(17545520-17545557)
chr8 (221-258)||(36316058-36316095)
chr8 (112-175)||(39721339-39721403)
[»] chr5 (2 HSPs)
chr5 (110-190)||(34272244-34272325)
chr5 (121-173)||(15027066-15027118)


Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 49272412 - 49272798
Alignment:
Q  1 caacacacttcatcccttcctttgatcgacgttgatctcttgaaaaacaacctcaccggaacgatcccttcaagcttaagcaattgtatcactcaggaga 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49272412 caacaaacttcatcccttcctttgatcgacgttgatctcttgaaaaacaacctcaccggaacgatcccttcaagcttaagcaattgtatcactcaggaga 49272511  T
Q  101 gtttcaatgtgttatgattcaaataacacatgagaaaatacatttggcaaaatgtaattggttgaggtaaatggacatgtgattagtgattgtgcataaa 200  Q
    |||||||||||||||||||||||||||||||        ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49272512 gtttcaatgtgttatgattcaaataacacat--------acacttggcaaaatgtaattggttgaggtaaatggacatgtgattagtgattgtgcataaa 49272603  T
Q  201 ttgggaaaggatgatcacttgaagaaaaatgatgaaagtctctcttctctccctttgagagtaatgacttaagtttttggaccaagtcttcttctatctt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  49272604 ttgggaaaggatgatcacttgaagaaaaatgatgaaagtctctcctctctccctttgagagtaatgacttaagtttttggactaagtcttcttctatctt 49272703  T
Q  301 cctacttgtttcttaagttgtcaatttacactttattcgatcaatttctcttgtattgtgtttttcattgaattcaatacaaagttatttcatct 395  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  49272704 cctactagtttcttaagttgtcaatttacactttattcgatcaatttctcttgtattgtgtttttcattgaattcaatgcaaagctatttcatct 49272798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 110 - 257
Target Start/End: Original strand, 23406518 - 23406672
Alignment:
Q  110 tgttatgattcaaa-taacacatgagaaaatacatttggcaaaatgtaattggttgaggtaaatggacatgtgattagtgattgtgcataaattgggaaa 208  Q
    |||||||||||||| || |||||||||||||||| |||| |||||||||||||||||| ||||| ||||||||    |||||||||| ||||  ||||||    
T  23406518 tgttatgattcaaaatagcacatgagaaaatacacttggaaaaatgtaattggttgagctaaatagacatgtg--gcgtgattgtgcttaaacagggaaa 23406615  T
Q  209 ggatgatcact--------tgaagaaaaatgatgaaagtctctcttctctccctttg 257  Q
    |||||||||||        ||||||||||||||||||||||||| |||||| |||||    
T  23406616 ggatgatcactaagggttatgaagaaaaatgatgaaagtctctcctctctctctttg 23406672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 256 - 394
Target Start/End: Complemental strand, 52724007 - 52723872
Alignment:
Q  256 tgagagtaatgacttaagtttttggaccaagtcttcttctatcttcctacttgtttcttaagttgtcaatttacactttattcgatcaatttctcttgta 355  Q
    |||||||||||| ||| || |||| || || ||||||||||||||  ||   |||  |||||||||||||||||| | ||||||||| ||||||||||||    
T  52724007 tgagagtaatgatttaggtctttgaactaaatcttcttctatctttttaa--gttcattaagttgtcaatttacattctattcgatcgatttctcttgta 52723910  T
Q  356 ttgtgtttttcattgaattcaatacaaagttatttcatc 394  Q
    || || |||||| ||||||||||||||||||||||||||    
T  52723909 ttttg-ttttcaatgaattcaatacaaagttatttcatc 52723872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 128 - 191
Target Start/End: Original strand, 4848715 - 4848778
Alignment:
Q  128 acatgagaaaatacatttggcaaaatgtaattggttgaggtaaatggacatgtgattagtgatt 191  Q
    |||||||||||||||||||||| ||  ||||||||||| | |||||||||||||  ||||||||    
T  4848715 acatgagaaaatacatttggcataacataattggttgacgcaaatggacatgtggctagtgatt 4848778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 128 - 191
Target Start/End: Complemental strand, 5198990 - 5198927
Alignment:
Q  128 acatgagaaaatacatttggcaaaatgtaattggttgaggtaaatggacatgtgattagtgatt 191  Q
    ||||||||||||||| | |||| ||  ||||||||||||| |||||||||||||  ||||||||    
T  5198990 acatgagaaaatacactcggcataacataattggttgaggcaaatggacatgtggctagtgatt 5198927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 110 - 395
Target Start/End: Original strand, 12900713 - 12901014
Alignment:
Q  110 tgttatgattcaa-ataacacatgagaaaatacatttggcaaaatgtaattggttgaggtaaatggacatgtgattagtgattgtgcataaattgggaaa 208  Q
    ||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||| |||||  ||| |||  | |||||||||||||||| ||||||    
T  12900713 tgttatgattcaagatagcacatgagaaaatacacttggcaaaatgtaattggttgagctaaataaacacgtggcttgtgattgtgcataaatagggaaa 12900812  T
Q  209 ggatgatcact--------tgaagaaaaatgatgaaagtctct-cttctctccct-------ttgagagtaatgacttaagtttttggaccaagtcttct 292  Q
     |||||||||         | ||||||||| ||||| |||||| ||||||||  |       |||||||||||| |||| || |||| || |||||||||    
T  12900813 agatgatcaccaagggttatcaagaaaaattatgaa-gtctctacttctctctttactcttcttgagagtaatggcttaggtctttgaactaagtcttct 12900911  T
Q  293 tctatcttcctacttgtttcttaagttgtcaatttacactttattcgatcaatttctcttgtattgtgtttttcattgaattcaatacaaagttatttca 392  Q
    |||||||| ||||| |||  |||||||||||||||||| |  |||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  12900912 tctatctttctactagttgattaagttgtcaatttacattccattcaatcactttctcttgtattgtgtttttcattgaattcaatacaaagtcatttca 12901011  T
Q  393 tct 395  Q
    |||    
T  12901012 tct 12901014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 255 - 394
Target Start/End: Original strand, 46502783 - 46502922
Alignment:
Q  255 ttgagagtaatgacttaagtttttggaccaagtcttcttctatcttcctacttgtttcttaagttgtcaatttacactttattcgatcaatttctcttgt 354  Q
    |||||||||||| |||| || ||| ||| |||||||||||||| || |||||  ||  |||||||||||||||||| |||||||||||||||||||||||    
T  46502783 ttgagagtaatggcttaggtctttagactaagtcttcttctatttttctactaattcattaagttgtcaatttacattttattcgatcaatttctcttgt 46502882  T
Q  355 attgtgtttttcattgaattcaatacaaagttatttcatc 394  Q
    ||||||||||| | ||||||||||||| || |||||||||    
T  46502883 attgtgttttttagtgaattcaatacagagctatttcatc 46502922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 133 - 219
Target Start/End: Original strand, 42048901 - 42048987
Alignment:
Q  133 agaaaatacatttggcaaaatgtaattggttgaggtaaatggacatgtgattagtgattgtgcataaattgggaaaggatgatcact 219  Q
    |||||||||| ||||||||||||||||||||||| ||||  ||||||||  | ||||||||||||| || ||||||| |||||||||    
T  42048901 agaaaatacacttggcaaaatgtaattggttgagctaaagagacatgtggctcgtgattgtgcatatatagggaaagtatgatcact 42048987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 255 - 395
Target Start/End: Original strand, 4520704 - 4520840
Alignment:
Q  255 ttgagagtaatgacttaagtttttggaccaagtcttcttctatcttcctacttgtttcttaagttgtcaatttacactttattcgatcaatttctcttgt 354  Q
    |||||| ||||||||||||| |||| || |||||||||| | |||| ||||| | |||| ||||||| |||||||| | ||||  ||||||||| | |||    
T  4520704 ttgagaataatgacttaagtctttgaactaagtcttcttttgtctttctactag-ttctaaagttgttaatttacattgtatttaatcaatttc-cctgt 4520801  T
Q  355 attgtgtttttcattgaattcaatacaaagttatttcatct 395  Q
    ||||||||||||| ||||||  ||||| |||||||||||||    
T  4520802 attgtgtttttcagtgaatt--atacatagttatttcatct 4520840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 5e-35; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 255 - 394
Target Start/End: Original strand, 39773357 - 39773496
Alignment:
Q  255 ttgagagtaatgacttaagtttttggaccaagtcttcttctatcttcctacttgtttcttaagttgtcaatttacactttattcgatcaatttctcttgt 354  Q
    |||||||||||| |||| || ||| ||| ||||||||||||||||| ||||| |||  |||| ||||||||||||| | ||||| |||||||||||||||    
T  39773357 ttgagagtaatggcttaggtctttagactaagtcttcttctatctttctactagttcattaaattgtcaatttacattctattcaatcaatttctcttgt 39773456  T
Q  355 attgtgtttttcattgaattcaatacaaagttatttcatc 394  Q
    ||||| ||||| | ||||||||||||||||||||||||||    
T  39773457 attgtattttttagtgaattcaatacaaagttatttcatc 39773496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 253 - 300
Target Start/End: Complemental strand, 29346833 - 29346786
Alignment:
Q  253 ctttgagagtaatgacttaagtttttggaccaagtcttcttctatctt 300  Q
    ||||||| |||||||||||||| ||||||| |||||||||||||||||    
T  29346833 ctttgagggtaatgacttaagtctttggactaagtcttcttctatctt 29346786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 257
Target Start/End: Complemental strand, 29346878 - 29346841
Alignment:
Q  220 tgaagaaaaatgatgaaagtctctcttctctccctttg 257  Q
    ||||||||||||||||||||||||| | ||||||||||    
T  29346878 tgaagaaaaatgatgaaagtctctcctttctccctttg 29346841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 284 - 395
Target Start/End: Original strand, 12324589 - 12324700
Alignment:
Q  284 aagtcttcttctatcttcctacttgtttcttaagttgtcaatttacactttattcgatcaatttctcttgtattgtgtttttcattgaattcaatacaaa 383  Q
    |||||||||||||| |||||||| ||||||||||||  ||||||||| | |||||  ||||||| ||||||||||||||||||||| |||||||||||||    
T  12324589 aagtcttcttctatattcctactagtttcttaagtttacaatttacattgtattcagtcaatttatcttgtattgtgtttttcattaaattcaatacaaa 12324688  T
Q  384 gttatttcatct 395  Q
    ||||||||||||    
T  12324689 gttatttcatct 12324700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 110 - 208
Target Start/End: Original strand, 11183882 - 11183981
Alignment:
Q  110 tgttatgattc-aaataacacatgagaaaatacatttggcaaaatgtaattggttgaggtaaatggacatgtgattagtgattgtgcataaattgggaaa 208  Q
    ||||||||||| ||||| || ||||||||||||| ||||||||||||||||||||  | ||||| ||||||||  |||| ||||||||||||| ||||||    
T  11183882 tgttatgattctaaatagcatatgagaaaatacacttggcaaaatgtaattggtttggataaatagacatgtgtctagttattgtgcataaatagggaaa 11183981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 258
Target Start/End: Complemental strand, 19261799 - 19261761
Alignment:
Q  220 tgaagaaaaatgatgaaagtctctcttctctccctttga 258  Q
    |||||||||||||||||||||| || |||||||||||||    
T  19261799 tgaagaaaaatgatgaaagtctatcctctctccctttga 19261761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 110 - 217
Target Start/End: Original strand, 30062980 - 30063087
Alignment:
Q  110 tgttatgattcaaataacacatgagaaaatacatttggcaaaatgtaattggttgaggtaaatggacatgtgattagtgattgtgcataaattgggaaag 209  Q
    |||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||   |||| || |||||||||  ||||||    
T  30062980 tgttgtgattcaaatagcacatgagaaaatacacttggcaaaatgtaattggttgaggtaaatggacatgtggccagtgtttttgcataaatatggaaag 30063079  T
Q  210 gatgatca 217  Q
    ||||||||    
T  30063080 gatgatca 30063087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 110 - 219
Target Start/End: Original strand, 10086065 - 10086175
Alignment:
Q  110 tgttatgattcaaa-taacacatgagaaaatacatttggcaaaatgtaattggttgaggtaaatggacatgtgattagtgattgtgcataaattgggaaa 208  Q
    |||||||||||||| || ||||||||||||||||  | | ||||| |||||||||||| ||||||||||||||  ||||||||||| |||||| ||||||    
T  10086065 tgttatgattcaaaatagcacatgagaaaatacacattgaaaaatataattggttgagataaatggacatgtggctagtgattgtgtataaatagggaaa 10086164  T
Q  209 ggatgatcact 219  Q
    |||||||||||    
T  10086165 ggatgatcact 10086175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 135 - 214
Target Start/End: Original strand, 165736 - 165814
Alignment:
Q  135 aaaatacatttggcaaaatgtaattggttgaggtaaatggacatgtgattagtgattgtgcataaattgggaaaggatga 214  Q
    ||||||||||||| |||||||||||| |||||||||||  ||| |||  ||||||| ||| ||||| |||||||||||||    
T  165736 aaaatacatttggtaaaatgtaattgattgaggtaaataaacacgtggctagtgatcgtgtataaa-tgggaaaggatga 165814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 351
Target Start/End: Complemental strand, 6033408 - 6033315
Alignment:
Q  258 agagtaatgacttaagtttttggaccaagtcttcttctatcttcctacttgtttcttaagttgtcaa-tttacactttattcgatcaatttctct 351  Q
    |||||||||| ||| ||||| |||| ||||||||||||||||| ||||   |||||||||||||||| ||| || | ||||| ||||||||||||    
T  6033408 agagtaatgattta-gttttaggactaagtcttcttctatctttctacaattttcttaagttgtcaattttgcattgtattccatcaatttctct 6033315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 110 - 190
Target Start/End: Original strand, 6919323 - 6919404
Alignment:
Q  110 tgttatgattcaa-ataacacatgagaaaatacatttggcaaaatgtaattggttgaggtaaatggacatgtgattagtgat 190  Q
    ||||||||||||| ||| || ||| ||||||||| |||||| ||  ||||||||||||| |||||||||||||  |||||||    
T  6919323 tgttatgattcaatatagcatatgggaaaatacacttggcataacataattggttgaggcaaatggacatgtggctagtgat 6919404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 255 - 394
Target Start/End: Complemental strand, 5369 - 5230
Alignment:
Q  255 ttgagagtaatgacttaagtttttggaccaa-gtcttcttctatcttcctacttgtttcttaagttgtcaatttacactttattcgatcaatttctcttg 353  Q
    |||||||||||| |||| || ||| ||| || ||| ||||||||||| ||||| |||  |||||||||||||||||| | ||||  | ||||||||||||    
T  5369 ttgagagtaatggcttaggtctttagactaaagtcgtcttctatctttctactagttcattaagttgtcaatttacattctatttaaacaatttctcttg 5270  T
Q  354 tattgtgtttttcattgaattcaatacaaagttatttcatc 394  Q
    |||||||||||| | ||||||||||||||||||||||||||    
T  5269 tattgtgttttt-agtgaattcaatacaaagttatttcatc 5230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0271 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0271
Description:

Target: scaffold0271; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 255 - 394
Target Start/End: Original strand, 3921 - 4060
Alignment:
Q  255 ttgagagtaatgacttaagtttttggaccaa-gtcttcttctatcttcctacttgtttcttaagttgtcaatttacactttattcgatcaatttctcttg 353  Q
    |||||||||||| |||| || ||| ||| || ||| ||||||||||| ||||| |||  |||||||||||||||||| | ||||  | ||||||||||||    
T  3921 ttgagagtaatggcttaggtctttagactaaagtcgtcttctatctttctactagttcattaagttgtcaatttacattctatttaaacaatttctcttg 4020  T
Q  354 tattgtgtttttcattgaattcaatacaaagttatttcatc 394  Q
    |||||||||||| | ||||||||||||||||||||||||||    
T  4021 tattgtgttttt-agtgaattcaatacaaagttatttcatc 4060  T

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Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 284 - 392
Target Start/End: Original strand, 37263989 - 37264096
Alignment:
Q  284 aagtcttcttctatcttcctacttgtttcttaagttgtcaatttacactttattcgatcaatttctcttgtattgtgtttttcattgaattcaatacaaa 383  Q
    ||||||||||||||||| ||||  |||||||| |||||| |||| |||| ||| | ||||||||||||||||||||||  |||| |||| ||||||||||    
T  37263989 aagtcttcttctatctttctacaagtttctta-gttgtccatttgcactgtatcccatcaatttctcttgtattgtgtaattcagtgaactcaatacaaa 37264087  T
Q  384 gttatttca 392  Q
    |||||||||    
T  37264088 gttatttca 37264096  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 257
Target Start/End: Complemental strand, 17011681 - 17011644
Alignment:
Q  220 tgaagaaaaatgatgaaagtctctcttctctccctttg 257  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  17011681 tgaagaaaaatgatgcaagtctctcctctctccctttg 17011644  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 257
Target Start/End: Original strand, 17545520 - 17545557
Alignment:
Q  220 tgaagaaaaatgatgaaagtctctcttctctccctttg 257  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  17545520 tgaagaaaaatgatgcaagtctctcctctctccctttg 17545557  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 258
Target Start/End: Complemental strand, 36316095 - 36316058
Alignment:
Q  221 gaagaaaaatgatgaaagtctctcttctctccctttga 258  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  36316095 gaagaaaaatgatgaaaatctctcctctctccctttga 36316058  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 175
Target Start/End: Complemental strand, 39721403 - 39721339
Alignment:
Q  112 ttatgattcaaa-taacacatgagaaaatacatttggcaaaatgtaattggttgaggtaaatgga 175  Q
    |||||||||||| || ||||||| |||||||| ||| || ||| |||||||| ||||||||||||    
T  39721403 ttatgattcaaaatagcacatgaaaaaatacacttgacataatataattggtcgaggtaaatgga 39721339  T

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Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 110 - 190
Target Start/End: Original strand, 34272244 - 34272325
Alignment:
Q  110 tgttatgattcaaa-taacacatgagaaaatacatttggcaaaatgtaattggttgaggtaaatggacatgtgattagtgat 190  Q
    |||||||||||||| || || |||||||||||||||||||| ||  ||||||||| |||||||||||||||||| |||||||    
T  34272244 tgttatgattcaaaatagcatatgagaaaatacatttggcataacataattggtttaggtaaatggacatgtgactagtgat 34272325  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 15027118 - 15027066
Alignment:
Q  121 aaataacacatgagaaaatacatttggcaaaatgtaattggttgaggtaaatg 173  Q
    ||||||||||||||||||||||||||||| ||  |||||||||||||||||||    
T  15027118 aaataacacatgagaaaatacatttggcataacataattggttgaggtaaatg 15027066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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