View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2746_low_13 (Length: 393)
Name: NF2746_low_13
Description: NF2746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2746_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 31537708 - 31537304
Alignment:
| Q |
1 |
ctgaagttattttatatattattgagatgcatcaaaattaacgtcttaaacacttcaataatgtttttaaaggtaaacact---ttaat----------- |
86 |
Q |
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| T |
31537708 |
ctgaagttattttatatattattgagatgcatcaaaattaacgtcttaaacacttcaataatgtttttaaaggtaaacactaatttaatatccatattat |
31537609 |
T |
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| Q |
87 |
---ttaatatccatattatttataaatgttgtattattcttatttggtgcttaccaaaaaccaatgggtgttttaacatggtggtgaacattgcataaat |
183 |
Q |
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| T |
31537608 |
ttattaatatccatattatttataaatgttgtattattattatttggtgcttaccaaaaaccaatgggtgttttaacatggtggtgaacattgcataaat |
31537509 |
T |
|
| Q |
184 |
gttgccaagtgaatactcaaatccttccaactccaagcttaacttttgcagaagagttttagttgctttgtagaaagcaacagcaaaatcatttagtggt |
283 |
Q |
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| T |
31537508 |
gttgccaagtgaatactcaaatccttccaactccaagcttaacttttgcagaaaagttttagttgctttgtagaaagcaacagcaaaatcatttagtggt |
31537409 |
T |
|
| Q |
284 |
ttcacacaattccctccattggtagaagttacaactggataacatcctattggtggaatgcttaggatgccgaattttcgagcccctaattcacacaggt |
383 |
Q |
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| T |
31537408 |
ttcacacaattccctccattggtagaagttacaactggataacatcctattggtggaatgcttaggatgccgaattttcgagcccctaattcatacagtt |
31537309 |
T |
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| Q |
384 |
tctgc |
388 |
Q |
| |
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| T |
31537308 |
tctgc |
31537304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 265 - 376
Target Start/End: Original strand, 31531000 - 31531111
Alignment:
| Q |
265 |
agcaaaatcatttagtggtttcacacaattccctccattggtagaagttacaactggataacatcctattggtggaatgcttaggatgccgaattttcga |
364 |
Q |
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| T |
31531000 |
agcaaaatcattcaatggcttcacacaattccctccattaccagaggttactgcaggacaacaccctataggtgcaacacttaggatgccaaattttcta |
31531099 |
T |
|
| Q |
365 |
gcccctaattca |
376 |
Q |
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|||||||||||| |
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| T |
31531100 |
gcccctaattca |
31531111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 31754969 - 31754921
Alignment:
| Q |
7 |
ttattttatatattattgagatgcatcaaaattaacgtcttaaacactt |
55 |
Q |
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| T |
31754969 |
ttatttgatatattattgagatgcattgaaattaacaacttaaacactt |
31754921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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