View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2746_low_16 (Length: 346)
Name: NF2746_low_16
Description: NF2746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2746_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 34377848 - 34377523
Alignment:
| Q |
1 |
aatgtacaacagcctcaagcttatagagaggggaccgaacttgcacagcaggaaacagatgaagcaatcccgacacaacatcccccagctgtccaggttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
34377848 |
aatgtacaacagcctcaagcttatagagaggggaccgaacttgcacagcaggaaacagatgaagcaatcccggcacaacatcccccagctgtccaggttt |
34377749 |
T |
|
| Q |
101 |
tggaggtccaaaatatggagaaaactcctgttgttaagcatgaaatcacgcacagacagcagcacttagcacaaggaaattcgttccattctgccttata |
200 |
Q |
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|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |
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| T |
34377748 |
tggaggtccagaatatggagaaaactcctattgttaagcatgaaatcacgcacagacagcagcacttggcacaaggaaattcgttccattctgccttaca |
34377649 |
T |
|
| Q |
201 |
aaatgtcacggatgagattgttagaacaccgagggattccgctgagttggttaatgatcaaaatagacctatcttggaacaaattatggccacgccattg |
300 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34377648 |
aaatgtcacggatgagattgttagaacaccaagggattccgctgagttggttaatgatcaaaatagacctatcttggaacaaattatggccacaccattg |
34377549 |
T |
|
| Q |
301 |
acaaacaattccattggtagcactca |
326 |
Q |
| |
|
|||||||||||||||||||||||||| |
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| T |
34377548 |
acaaacaattccattggtagcactca |
34377523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 23 - 326
Target Start/End: Complemental strand, 12879862 - 12879559
Alignment:
| Q |
23 |
atagagaggggaccgaacttgcacagcaggaaacagatgaagcaatcccgacacaacatcccccagctgtccaggttttggaggtccaaaatatggagaa |
122 |
Q |
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||||||||||||||| ||||||||| |||||||||||||||||||| | ||||||| |||||| |||||||||||||||||||||| ||||||||||| |
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| T |
12879862 |
atagagaggggaccggacttgcacaacaggaaacagatgaagcaatatagtcacaacaacccccaactgtccaggttttggaggtccataatatggagaa |
12879763 |
T |
|
| Q |
123 |
aactcctgttgttaagcatgaaatcacgcacagacagcagcacttagcacaaggaaattcgttccattctgccttataaaatgtcacggatgagattgtt |
222 |
Q |
| |
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|||| |||||| || ||| ||||||| ||||||||||| ||||| | ||||||||||||||||| |||| ||||| ||||||||||||||||||||||| |
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|
| T |
12879762 |
aacttttgttgtaaaccataaaatcacacacagacagcaacacttggaacaaggaaattcgttcctttctaccttacaaaatgtcacggatgagattgtt |
12879663 |
T |
|
| Q |
223 |
agaacaccgagggattccgctgagttggttaatgatcaaaatagacctatcttggaacaaattatggccacgccattgacaaacaattccattggtagca |
322 |
Q |
| |
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|||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
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| T |
12879662 |
agaacaccatggaattccgttgagttggttaatgatcaaaatagacctatcttggaacaaattatggccacgacattgacaaacaattccattggtaaca |
12879563 |
T |
|
| Q |
323 |
ctca |
326 |
Q |
| |
|
|||| |
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|
| T |
12879562 |
ctca |
12879559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 118 - 323
Target Start/End: Original strand, 35975877 - 35976082
Alignment:
| Q |
118 |
gagaaaactcctgttgttaagcatgaaatcacgcacagacagcagcacttagcacaaggaaattcgttccattctgccttataaaatgtcacggatgaga |
217 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||||| ||||||||| ||||||| |
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|
| T |
35975877 |
gagaaaactcctgttgttaaccatgaaatcacgcacagacagaagcacttggcacaaggaaattcgtatcattctgccttacaaaatgtcatagatgaga |
35975976 |
T |
|
| Q |
218 |
ttgttagaacaccgagggattccgctgagttggttaatgatcaaaatagacctatcttggaacaaattatggccacgccattgacaaacaattccattgg |
317 |
Q |
| |
|
||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35975977 |
ttgttagaacaccaagagattccgctaagttggttaatgatcaaaatagacctatcttggaacaaattatggccacgccattgacaaacaattccattgg |
35976076 |
T |
|
| Q |
318 |
tagcac |
323 |
Q |
| |
|
|||||| |
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|
| T |
35976077 |
tagcac |
35976082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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