View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2746_low_18 (Length: 314)
Name: NF2746_low_18
Description: NF2746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2746_low_18 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 23588824 - 23589140
Alignment:
| Q |
1 |
gaagatgctattgagggggctattcaatggttggatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggcatttgca |
100 |
Q |
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| T |
23588824 |
gaagatgctattgagggggctattcaatggttggatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggcatttgca |
23588923 |
T |
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| Q |
101 |
accctatcattgcaaggatgtatcaaggtgctggtggagatgctggaggagccatggatgaggatggtcctacagctggcagtggaagcggtgctggccc |
200 |
Q |
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| T |
23588924 |
accctatcattgcaaggatgtatcaaggtgctggtggagatgctggaggagccatggatgaggatggtcctacagctggcagtggaagcggtgctggccc |
23589023 |
T |
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| Q |
201 |
caaaattgaggaagttgattaagctaaact---gtcattggattgatgggtggttcatgannnnnnnngcagggactcttgaattagtagcttaattata |
297 |
Q |
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| T |
23589024 |
caaaattgaggaagttgattaagctaaactttgttcatgggattgatgggtggttcatgattttttttgcaaggactcttgaattagtagcttaattata |
23589123 |
T |
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| Q |
298 |
tgtatttgttttgattt |
314 |
Q |
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| T |
23589124 |
tgtatttgttttgattt |
23589140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 23597676 - 23597899
Alignment:
| Q |
1 |
gaagatgctattgagggggctattcaatggttggatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggcatttgca |
100 |
Q |
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| T |
23597676 |
gaagatgctattgagggggctattcaatggttggatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggtatttgca |
23597775 |
T |
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| Q |
101 |
accctatcattgcaaggatgtatcaaggtgctggtggagatgctggaggagccatggatgaggatggtcctacagctggcagtggaagcggtgctggccc |
200 |
Q |
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| T |
23597776 |
accctatcattgcaaggatgtatcaaggtgctggtggtgatgctggaggagccatggatgaggatggacctgctgctggcagtggaagtggtgctggccc |
23597875 |
T |
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| Q |
201 |
caaaattgaggaagttgattaagc |
224 |
Q |
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| T |
23597876 |
caaaattgaggaagttgattaagc |
23597899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 130
Target Start/End: Complemental strand, 39984678 - 39984594
Alignment:
| Q |
46 |
cttggagaggctgatgaatttgaggacaagatgaaggagctggagggcatttgcaaccctatcattgcaaggatgtatcaaggtg |
130 |
Q |
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| T |
39984678 |
cttgcagaggctgatgagtttgaggacaagatgaaggaacttgaaggtgtctgcaaccctatcattgccaagatgtaccaaggtg |
39984594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 130
Target Start/End: Original strand, 8018554 - 8018633
Alignment:
| Q |
51 |
agaggctgatgaatttgaggacaagatgaaggagctggagggcatttgcaaccctatcattgcaaggatgtatcaaggtg |
130 |
Q |
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| T |
8018554 |
agaggctgatgagtttgaagataagatgaaggaacttgagagcctttgcaacccaatcattgccaagatgtatcaaggtg |
8018633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 130
Target Start/End: Complemental strand, 8101741 - 8101615
Alignment:
| Q |
4 |
gatgctattgagggggctattcaatggttggatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggcatttgcaacc |
103 |
Q |
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||||| |||||||| || ||||||||| | |||| ||| || |||| || || ||||| ||||| ||||||||||||||||| ||| || || |||| |
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| T |
8101741 |
gatgcaattgagggagccattcaatggcttgatgcaaaccagcttgctgaagccgatgagtttgaagacaagatgaaggagcttgagacaatctgtaacc |
8101642 |
T |
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| Q |
104 |
ctatcattgcaaggatgtatcaaggtg |
130 |
Q |
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| T |
8101641 |
caatcattgcaaagatgtaccaaggtg |
8101615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 130
Target Start/End: Original strand, 17706803 - 17706893
Alignment:
| Q |
40 |
aatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggcatttgcaaccctatcattgcaaggatgtatcaaggtg |
130 |
Q |
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| T |
17706803 |
aatcagcttgcagaggcagatgagtttgaggacaagatgaaggaaccagaaggtgtctgcaaccctatcattgccaagatgtaccaaggtg |
17706893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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