View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2746_low_19 (Length: 309)
Name: NF2746_low_19
Description: NF2746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2746_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 37668409 - 37668702
Alignment:
| Q |
1 |
aaatagactagaaaggttataggttaatgaaattaagttattttttgaaatttaatgtgatacgtgtagaataagactttatatgacaacttatttctat |
100 |
Q |
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| T |
37668409 |
aaatagactagaaagctaataggttaatgaaattaaattatgttttgaaatttaatgtgatacgtgtagaataagactttatatgacaacttatttccat |
37668508 |
T |
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| Q |
101 |
tatattttataataacacatttaaacatgtnnnnnnn-ttaatttaagttaagttaatgtaataagaacacttgtaaaataaattattcatatttattta |
199 |
Q |
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| T |
37668509 |
tatattttataataacacatttaaacatgtaaaaaaaattaatttaagttaagttaatgtaataagaacacttgtaaaataaattattcatatttattta |
37668608 |
T |
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| Q |
200 |
attagctcggtctagtaagtctaaacaaaattctttttcacttgaaatttggcatttatttttcaagtctaaaaaggctatttcgacttatttt |
293 |
Q |
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| T |
37668609 |
attagctcggtctagtaagtctaaacaaaattctttttcacttgaaatttggcatttttttttcaagtctaaaaagactatttcgacttatttt |
37668702 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 115
Target Start/End: Complemental strand, 6908711 - 6908672
Alignment:
| Q |
76 |
actttatatgacaacttatttctattatattttataataa |
115 |
Q |
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| T |
6908711 |
actttatatgacaacctatttatattatattttataataa |
6908672 |
T |
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