View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2746_low_2 (Length: 638)
Name: NF2746_low_2
Description: NF2746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2746_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 501; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 18 - 625
Target Start/End: Complemental strand, 3414267 - 3413663
Alignment:
| Q |
18 |
atttttccctttgtctgtttcatgatcaaagtttgttttccatatcagatgtcttcatctatggtggttcacgatatgtggcattttgtttcaatttgct |
117 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3414267 |
attttgccctttgtctgcttcatgatcaaagtttggtttccatatcagatgtcttcatctatggtggttcacgatatgtggcattttgtttcaatttgct |
3414168 |
T |
|
| Q |
118 |
aagattcacttctaattagtcttaaattgttcattgtgttagctttctgggtgtggcttcatgcgtcatattgattggtgtggattgttatgggttggtc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3414167 |
gagattcacttctaattagtcttaaattgttcattgtgttagctttctggttatggcttcatgcgtcatattgattggtgtggattgttatgggttggtc |
3414068 |
T |
|
| Q |
218 |
gttggtgtgtttgaatcgccgccacactcgcgttcttggcatgtttctgtctgaaaaacttgaaagggtctatttaaactaggnnnnnnnagactagttt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||| ||||||| ||||||||| |
|
|
| T |
3414067 |
gttggtgtgtttgaatcgccgccacactcgcgttcttggcatgtttcggtctcaaaaacctgaaagggtctatttcaactaggtttttttggactagttt |
3413968 |
T |
|
| Q |
318 |
gagctaaattaaacatatatctcttaatactccttcatggtaaatcaagcattttagaatcaacatactactttgtataactctctaaaccaaatattta |
417 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
3413967 |
gagctaaattaaacatatatctctcaatactccttcatgttaaatcaagcattttagaatca---tactactttgtataactctctaaaccaaatattta |
3413871 |
T |
|
| Q |
418 |
tctagcctctctctaaccttcaccctccattgtacttatctaccctaaaatccaaatatctagttcaggatataacctcattgggttgtggtgcgactat |
517 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3413870 |
tctagcctctctctaaccttcatcctccattgtacttatctaccctaaaatccaaatatctagttcaggatatagcctcattgggttgtggtgcgactat |
3413771 |
T |
|
| Q |
518 |
accgtcttttgcaccactgtgtcaccctattgcggttgcttttattccttccatttagacggccgtccattcaaacgctctcttaacctatttccatcaa |
617 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3413770 |
accgtcttttgcaccactgtgtcatcctattgcggttgcttttattccttccatttcgacggtcgtccattcaaacgctctcttaacctatttccatcaa |
3413671 |
T |
|
| Q |
618 |
tgttgttc |
625 |
Q |
| |
|
|||||||| |
|
|
| T |
3413670 |
tgttgttc |
3413663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University