View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2746_low_20 (Length: 309)

Name: NF2746_low_20
Description: NF2746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2746_low_20
NF2746_low_20
[»] chr3 (5 HSPs)
chr3 (188-298)||(26247302-26247413)
chr3 (81-156)||(53876352-53876427)
chr3 (29-79)||(26223064-26223114)
chr3 (21-61)||(26223023-26223063)
chr3 (109-141)||(54458252-54458284)
[»] chr8 (1 HSPs)
chr8 (80-151)||(7042875-7042946)
[»] chr4 (4 HSPs)
chr4 (98-156)||(4357683-4357741)
chr4 (81-151)||(28974427-28974497)
chr4 (99-148)||(30568787-30568836)
chr4 (98-147)||(50714707-50714756)
[»] chr7 (4 HSPs)
chr7 (99-156)||(23186084-23186141)
chr7 (98-152)||(31394458-31394512)
chr7 (99-156)||(37490552-37490609)
chr7 (99-151)||(27234623-27234675)
[»] chr2 (1 HSPs)
chr2 (99-156)||(36103235-36103292)


Alignment Details
Target: chr3 (Bit Score: 96; Significance: 4e-47; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 188 - 298
Target Start/End: Original strand, 26247302 - 26247413
Alignment:
Q  188 ataacgcaatagagttatcccgaataaa-tctaattggctacttagctagcactactaaacgcctggtttccacaaaatcaagaacttgatgacgtcaca 286  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26247302 ataacgcaatagagttatcccgaataaaatctaattggctacttagctagcactactaaacgcctggtttccacaaaatcaagaatttgatgacgtcaca 26247401  T
Q  287 tgttttattcat 298  Q
    ||||||| ||||    
T  26247402 tgttttactcat 26247413  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 81 - 156
Target Start/End: Original strand, 53876352 - 53876427
Alignment:
Q  81 atactccctcaatcctcaattaaatgagtcatttatttatttcataaatattaagaaaaatatataaatgagggag 156  Q
    ||||||||||  ||||||||||| |||||||||| ||||||||||| |||||||||||||| ||||||||| ||||    
T  53876352 atactccctccgtcctcaattaactgagtcatttgtttatttcatagatattaagaaaaatgtataaatgaaggag 53876427  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 26223064 - 26223114
Alignment:
Q  29 tagtactttgcgaggtggtcgtgagcatttgttattatcactttcttacca 79  Q
    ||||||||||||||||||| |||||||||||||||  | ||||||||||||    
T  26223064 tagtactttgcgaggtggttgtgagcatttgttatcgtgactttcttacca 26223114  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 26223023 - 26223063
Alignment:
Q  21 attatgagtagtactttgcgaggtggtcgtgagcatttgtt 61  Q
    ||||||||||||||||||| ||||||| |||||||||||||    
T  26223023 attatgagtagtactttgcaaggtggttgtgagcatttgtt 26223063  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 141
Target Start/End: Original strand, 54458252 - 54458284
Alignment:
Q  109 tcatttatttatttcataaatattaagaaaaat 141  Q
    ||||||||| |||||||||||||||||||||||    
T  54458252 tcatttattcatttcataaatattaagaaaaat 54458284  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 151
Target Start/End: Complemental strand, 7042946 - 7042875
Alignment:
Q  80 tatactccctcaatcctcaattaaatgagtcatttatttatttcataaatattaagaaaaatatataaatga 151  Q
    |||||||||||  |||  |||||||||||||||||||| |||||| | |||| ||||||||| |||||||||    
T  7042946 tatactccctccgtcccaaattaaatgagtcatttattcatttcacacatatcaagaaaaatgtataaatga 7042875  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 156
Target Start/End: Complemental strand, 4357741 - 4357683
Alignment:
Q  98 aattaaatgagtcatttatttatttcataaatattaagaaaaatatataaatgagggag 156  Q
    |||||| ||||||||| | | |||||||| |||||||||||||||||||||||| ||||    
T  4357741 aattaactgagtcattgactcatttcatatatattaagaaaaatatataaatgaaggag 4357683  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 151
Target Start/End: Complemental strand, 28974497 - 28974427
Alignment:
Q  81 atactccctcaatcctcaattaaatgagtcatttatttatttcataaatattaagaaaaatatataaatga 151  Q
    |||||||||||||||| ||| ||  ||||||||| ||||||||| | ||||||||| |||| |||||||||    
T  28974497 atactccctcaatcctaaatgaatcgagtcatttgtttatttcacacatattaagacaaatgtataaatga 28974427  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 30568836 - 30568787
Alignment:
Q  99 attaaatgagtcatttatttatttcataaatattaagaaaaatatataaa 148  Q
    ||||| ||||||||||| |||||||||| |||||||||||||| ||||||    
T  30568836 attaagtgagtcatttacttatttcatatatattaagaaaaatgtataaa 30568787  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 50714756 - 50714707
Alignment:
Q  98 aattaaatgagtcatttatttatttcataaatattaagaaaaatatataa 147  Q
    |||||| |||||||||| ||||||||||| |||||||||||||| |||||    
T  50714756 aattaagtgagtcatttgtttatttcatatatattaagaaaaatttataa 50714707  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 156
Target Start/End: Original strand, 23186084 - 23186141
Alignment:
Q  99 attaaatgagtcatttatttatttcataaatattaagaaaaatatataaatgagggag 156  Q
    ||||| ||||||||||  | |||||||| |||||||||||||||||||||||| ||||    
T  23186084 attaactgagtcatttgctcatttcatatatattaagaaaaatatataaatgaaggag 23186141  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 152
Target Start/End: Complemental strand, 31394512 - 31394458
Alignment:
Q  98 aattaaatgagtcatttatttatttcataaatattaagaaaaatatataaatgag 152  Q
    |||||||||||||||||  |||||||| | ||||||| ||| |||||||||||||    
T  31394512 aattaaatgagtcatttgattatttcacatatattaaaaaatatatataaatgag 31394458  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 156
Target Start/End: Original strand, 37490552 - 37490609
Alignment:
Q  99 attaaatgagtcatttatttatttcataaatattaagaaaaatatataaatgagggag 156  Q
    ||||| ||||||||||||| |||||| | || ||||||||||| ||||||||| ||||    
T  37490552 attaagtgagtcatttattcatttcacacatgttaagaaaaatgtataaatgaaggag 37490609  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 151
Target Start/End: Complemental strand, 27234675 - 27234623
Alignment:
Q  99 attaaatgagtcatttatttatttcataaatattaagaaaaatatataaatga 151  Q
    ||||| |||||||||| || |||||| | |||||||||||||| |||||||||    
T  27234675 attaactgagtcatttgttcatttcacacatattaagaaaaatgtataaatga 27234623  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 156
Target Start/End: Original strand, 36103235 - 36103292
Alignment:
Q  99 attaaatgagtcatttatttatttcataaatattaagaaaaatatataaatgagggag 156  Q
    |||||||| |||||||||| ||||||||  ||||||||||||| || |||||| ||||    
T  36103235 attaaatgggtcatttattcatttcatatgtattaagaaaaatgtacaaatgaaggag 36103292  T

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