View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2746_low_24 (Length: 291)
Name: NF2746_low_24
Description: NF2746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2746_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 14 - 272
Target Start/End: Complemental strand, 39478379 - 39478121
Alignment:
| Q |
14 |
gcaaagggtgtcaacaatttccttaagcttctcagcttgactaaccaaagcctctgaaataaggaggatctcatcaggtgagaaatatctggcactatct |
113 |
Q |
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| T |
39478379 |
gcaaaaggtgtcaacaatttccttaagcttctcagcttgactaaccaaagcctctgaaataaggaggatctcatcaggtgagaaatatctggcactatct |
39478280 |
T |
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| Q |
114 |
tatgagactatgataaatatacaagggaatagttgatccccttgtcaattggtttaaggtttgtaaactgttttttgatttcatcatgcatgcttctttg |
213 |
Q |
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| T |
39478279 |
tatgagactatgataaatatacaagggaatagttgatccccttgtcaattggtttacggtttgtaaactgttttttgatttcatcatgcatgcttctttg |
39478180 |
T |
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| Q |
214 |
tttatctacattattcatttaatttagttgaactctgagatattttgcttaaaagaaat |
272 |
Q |
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| T |
39478179 |
tttatctacattattcatttaatttagttgaactctgagatattttgcttaaaagaaat |
39478121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 14 - 104
Target Start/End: Complemental strand, 39474406 - 39474316
Alignment:
| Q |
14 |
gcaaagggtgtcaacaatttccttaagcttctcagcttgactaaccaaagcctctgaaataaggaggatctcatcaggtgagaaatatctg |
104 |
Q |
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| T |
39474406 |
gcaaaaggtgtcaacaatttccttaagcttctcagcttgagtaaccaaagcctctgacatgaggaggaactcatcaggtgagaaatatctg |
39474316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 39485568 - 39485496
Alignment:
| Q |
20 |
ggtgtcaacaatttccttaagcttctcagcttgactaaccaaagcctctgaaataaggaggatctcatcaggt |
92 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||| |
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| T |
39485568 |
ggtgtcaacaatttccttaagcttctcagcttgaataaccaaagcctctgacataaggaggatctcataaggt |
39485496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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