View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2746_low_3 (Length: 621)
Name: NF2746_low_3
Description: NF2746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2746_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 588; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 15 - 602
Target Start/End: Original strand, 6970713 - 6971300
Alignment:
| Q |
15 |
caaaggtgacatagctaagaataatcaagcacttgttcttagcatggatgatcatgaagaagtaggtgatgaattcaatggagttaaactttggtgggct |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6970713 |
caaaggtgacatagctaagaataatcaagcacttgttcttagcatggatgatcatgaagaagtaggtgatgaattcaatggagttaaactttggtgggct |
6970812 |
T |
|
| Q |
115 |
agtggcaaaaatatatccaaaccaaattcattttcacttcatcacaacatagatgaaaaaaggtactataaattaacttttcataaacataatagagatg |
214 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6970813 |
agtggcaaaaatatatccaaaccaaattcattttcacttcatcacaacatagatgaaaaaaggtactataaattaacttttcataaacataatagagatg |
6970912 |
T |
|
| Q |
215 |
tgattttaggtacatatcttaattatgtactaaaagaaggtaaagcaattaaggtgaaaaatagacaaaggaaactttatactaatagtggatcttattg |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6970913 |
tgattttaggtacatatcttaattatgtactaaaagaaggtaaagcaattaaggtgaaaaatagacaaaggaaactttatactaatagtggatcttattg |
6971012 |
T |
|
| Q |
315 |
gagccatgttgtgtttgaacatccttcaacatttgaaacattagctatggatttcgagaagaagaaaatgatcattgatgatcttattacatttagtaaa |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6971013 |
gagccatgttgtgtttgaacatccttcaacatttgaaacattagctatggatttcgagaagaagaaaatgatcattgatgatcttattacatttagtaaa |
6971112 |
T |
|
| Q |
415 |
gctggtgaattctatgcaagaattggaagggcttggaaaagaggttatttactttatggtcctccagggactggaaagtcaacaatgattgctgccatgg |
514 |
Q |
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| T |
6971113 |
gctggtgaattctatgcaagaattggaagggcttggaaaagaggttatttactttatggtcctccagggactggaaagtcaacaatgattgctgccatgg |
6971212 |
T |
|
| Q |
515 |
caaatttgttaggctatgatctttatgatcttgaattgactgctgttaaggataacactgagttgaggaagcttttgattgagacatc |
602 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6971213 |
caaatttgttaggctatgatctttatgatcttgaattgactgctgttaaggataacactgagttgaggaagcttttgattgagacatc |
6971300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 389 - 491
Target Start/End: Original strand, 6968275 - 6968377
Alignment:
| Q |
389 |
ttgatgatcttattacatttagtaaagctggtgaattctatgcaagaattggaagggcttggaaaagaggttatttactttatggtcctccagggactgg |
488 |
Q |
| |
|
||||||||||| ||||||| ||||| ||| || | ||||||| |||||| | | ||||||| ||||| ||||| ||||||||||||||||| || || |
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| T |
6968275 |
ttgatgatcttgttacattcagtaaggctaaagagtattatgcaaaaattggcaagccttggaagagaggctatttgctttatggtcctccaggaacagg |
6968374 |
T |
|
| Q |
489 |
aaa |
491 |
Q |
| |
|
||| |
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|
| T |
6968375 |
aaa |
6968377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 15 - 598
Target Start/End: Original strand, 11449462 - 11450045
Alignment:
| Q |
15 |
caaaggtgacatagctaagaataatcaagcacttgttcttagcatggatgatcatgaagaagtaggtgatgaattcaatggagttaaactttggtgggct |
114 |
Q |
| |
|
||||||||||||||| |||||||||||| | ||| ||||||||||||||||| | |||||| || ||||||||||||||||| | |||||||||||||| |
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| T |
11449462 |
caaaggtgacatagccaagaataatcaatcccttattcttagcatggatgataaagaagaaatatgtgatgaattcaatggaatgaaactttggtgggcc |
11449561 |
T |
|
| Q |
115 |
agtggcaaaaatatatccaaaccaaattcattttcacttcatcacaacatagatgaaaaaaggtactataaattaacttttcataaacataatagagatg |
214 |
Q |
| |
|
||||||||||| |||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||| | ||||| |||||||| |||||||||| |
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|
| T |
11449562 |
agtggcaaaaaagcatccaactcaaattcaatttcacttcatcaaaacatagatgaaaaaaggtactataaactcactttccataaacacaatagagatg |
11449661 |
T |
|
| Q |
215 |
tgattttaggtacatatcttaattatgtactaaaagaaggtaaagcaattaaggtgaaaaatagacaaaggaaactttatactaatagtggatcttattg |
314 |
Q |
| |
|
|||||||||| | |||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
11449662 |
tgattttagggaaatatcttagccatgtactaaaagaaggtaaagcaattcaagtgaaaaatagacaaaggaaactttatactaatagtggatctcattg |
11449761 |
T |
|
| Q |
315 |
gagccatgttgtgtttgaacatccttcaacatttgaaacattagctatggatttcgagaagaagaaaatgatcattgatgatcttattacatttagtaaa |
414 |
Q |
| |
|
|||||||||||| ||||| ||||| ||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||| ||||||||||||||| |
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| T |
11449762 |
gagccatgttgtatttgagcatccatcaacatttgaaacattagctatggatttagagaagaaggaaatgataattgatgatctcattacatttagtaaa |
11449861 |
T |
|
| Q |
415 |
gctggtgaattctatgcaagaattggaagggcttggaaaagaggttatttactttatggtcctccagggactggaaagtcaacaatgattgctgccatgg |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
11449862 |
gctggtgaattctatgcaagaattggaagggcatggaaaagaggttatttactttatggtcctccagggactggaaagtcaacaatgattggtgctatgg |
11449961 |
T |
|
| Q |
515 |
caaatttgttaggctatgatctttatgatcttgaattgactgctgttaaggataacactgagttgaggaagcttttgattgaga |
598 |
Q |
| |
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| ||| ||||| | |||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
11449962 |
ctaatctgttaagttatgatctttatgaccttgaattgactgctgtgaaggataacactgcattgaggaagcttttgattgaga |
11450045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 323 - 599
Target Start/End: Original strand, 44395934 - 44396210
Alignment:
| Q |
323 |
ttgtgtttgaacatccttcaacatttgaaacattagctatggatttcgagaagaagaaaatgatcattgatgatcttattacatttagtaaagctggtga |
422 |
Q |
| |
|
|||| |||||||||||| |||| ||||||||| | |||||||| ||||||||||| ||| ||||| ||| | |||| ||||||||| | || |
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|
| T |
44395934 |
ttgtttttgaacatcctgcaacttttgaaacaatggctatggaacctcagaagaagaaagagattattgaagatttggttacttttagtaaaagtaagga |
44396033 |
T |
|
| Q |
423 |
attctatgcaagaattggaagggcttggaaaagaggttatttactttatggtcctccagggactggaaagtcaacaatgattgctgccatggcaaatttg |
522 |
Q |
| |
|
|| ||||| || ||||| | ||||||||||| ||||||||||||| |||||||||||| ||||| || ||||||||||||||||| ||||| |||||| |
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|
| T |
44396034 |
tttttatgctaggattggtaaagcttggaaaaggggttatttactttttggtcctccaggtactggtaaatcaacaatgattgctgctatggctaatttg |
44396133 |
T |
|
| Q |
523 |
ttaggctatgatctttatgatcttgaattgactgctgttaaggataacactgagttgaggaagcttttgattgagac |
599 |
Q |
| |
|
|| || |||||| |||||||| | || || || || || |||||||| ||||||||||||||||||||||||||||| |
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|
| T |
44396134 |
ttgggttatgatgtttatgatttagagttaacagcagtgaaggataatactgagttgaggaagcttttgattgagac |
44396210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 442 - 543
Target Start/End: Original strand, 53395495 - 53395596
Alignment:
| Q |
442 |
agggcttggaaaagaggttatttactttatggtcctccagggactggaaagtcaacaatgattgctgccatggcaaatttgttaggctatgatctttatg |
541 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||| |||||||| || | ||||||||||| ||||| ||||| | || |||||| |||||| |
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|
| T |
53395495 |
agggcttggaaaagaggttatcttctttatggtcctccaggaactggaaaatctagcatgattgctgctatggctaattttcttggttatgatatttatg |
53395594 |
T |
|
| Q |
542 |
at |
543 |
Q |
| |
|
|| |
|
|
| T |
53395595 |
at |
53395596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 437 - 596
Target Start/End: Complemental strand, 2833383 - 2833224
Alignment:
| Q |
437 |
ttggaagggcttggaaaagaggttatttactttatggtcctccagggactggaaagtcaacaatgattgctgccatggcaaatttgttaggctatgatct |
536 |
Q |
| |
|
|||||| |||||||||| | |||||| ||||||||||||||||||| |||||||| || || ||||| | || || ||||||| | ||||||| | |
|
|
| T |
2833383 |
ttggaaaggcttggaaacgtggttatctactttatggtcctccaggaactggaaaatctactatgatatcagctatagcaaattacatgaactatgatgt |
2833284 |
T |
|
| Q |
537 |
ttatgatcttgaattgactgctgttaaggataacactgagttgaggaagcttttgattga |
596 |
Q |
| |
|
|||||||||||||| || ||||||||||||||| |||||||| || ||||||||||| |
|
|
| T |
2833283 |
gtatgatcttgaattaacaactgttaaggataacaatgagttgaagagacttttgattga |
2833224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 427 - 599
Target Start/End: Original strand, 1800795 - 1800967
Alignment:
| Q |
427 |
tatgcaagaattggaagggcttggaaaagaggttatttactttatggtcctccagggactggaaagtcaacaatgattgctgccatggcaaatttgttag |
526 |
Q |
| |
|
||||||| ||| || | |||||||||| | |||||||||||||||||||||||||| || || || || || ||||| || || ||||| ||||| | |
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|
| T |
1800795 |
tatgcaaaaatcggtaaggcttggaaacgcggttatttactttatggtcctccaggaacaggtaaatctactatgatagccgctatggcgaatttcatga |
1800894 |
T |
|
| Q |
527 |
gctatgatctttatgatcttgaattgactgctgttaaggataacactgagttgaggaagcttttgattgagac |
599 |
Q |
| |
|
||||||| |||||||||||||||| || || ||||||||||| || ||||| || ||| | || |||||||| |
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|
| T |
1800895 |
actatgatgtttatgatcttgaattaaccgcggttaaggataataccgagttaagaaagttgttaattgagac |
1800967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 329 - 365
Target Start/End: Original strand, 8043713 - 8043749
Alignment:
| Q |
329 |
ttgaacatccttcaacatttgaaacattagctatgga |
365 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||| |
|
|
| T |
8043713 |
ttgaacatccttcaacatttgaaacacttgctatgga |
8043749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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