View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2746_low_30 (Length: 263)

Name: NF2746_low_30
Description: NF2746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2746_low_30
NF2746_low_30
[»] chr6 (21 HSPs)
chr6 (132-247)||(12689970-12690084)
chr6 (144-247)||(12797762-12797865)
chr6 (132-237)||(17963548-17963653)
chr6 (132-233)||(6406854-6406955)
chr6 (136-237)||(17600382-17600483)
chr6 (139-234)||(11569685-11569779)
chr6 (132-247)||(19674774-19674888)
chr6 (132-234)||(11533695-11533796)
chr6 (132-234)||(11559205-11559306)
chr6 (132-233)||(16835155-16835257)
chr6 (132-237)||(20747287-20747392)
chr6 (176-237)||(22694375-22694436)
chr6 (132-247)||(22610512-22610625)
chr6 (133-237)||(11428959-11429063)
chr6 (132-237)||(2699104-2699210)
chr6 (17-67)||(12689858-12689908)
chr6 (18-67)||(19674660-19674709)
chr6 (132-208)||(11612922-11612998)
chr6 (173-237)||(33686634-33686698)
chr6 (132-237)||(12405350-12405455)
chr6 (132-237)||(19994375-19994479)
[»] chr5 (27 HSPs)
chr5 (132-247)||(35678878-35678993)
chr5 (144-247)||(9725753-9725857)
chr5 (132-247)||(4872883-4872998)
chr5 (132-237)||(26668279-26668384)
chr5 (132-237)||(26939876-26939981)
chr5 (132-237)||(36424639-36424744)
chr5 (132-237)||(7452756-7452861)
chr5 (132-233)||(37247793-37247894)
chr5 (132-237)||(6154422-6154527)
chr5 (132-237)||(29166963-29167068)
chr5 (144-237)||(37646045-37646138)
chr5 (132-237)||(23757154-23757259)
chr5 (132-237)||(23822610-23822715)
chr5 (136-247)||(17162862-17162974)
chr5 (132-204)||(36430519-36430591)
chr5 (138-233)||(39519392-39519487)
chr5 (132-206)||(17159378-17159452)
chr5 (132-208)||(6511622-6511698)
chr5 (132-247)||(23689072-23689187)
chr5 (132-237)||(20180145-20180248)
chr5 (173-247)||(22832486-22832560)
chr5 (144-234)||(37536930-37537019)
chr5 (179-237)||(40150243-40150301)
chr5 (132-237)||(10759352-10759456)
chr5 (138-210)||(39524031-39524103)
chr5 (18-67)||(35679058-35679107)
chr5 (18-67)||(4872774-4872823)
[»] chr1 (14 HSPs)
chr1 (132-247)||(23191819-23191932)
chr1 (132-247)||(40166941-40167056)
chr1 (132-241)||(16036607-16036716)
chr1 (132-237)||(10136326-10136431)
chr1 (132-233)||(25844757-25844858)
chr1 (132-226)||(51040522-51040616)
chr1 (132-237)||(38622190-38622295)
chr1 (132-210)||(16648646-16648725)
chr1 (132-212)||(12260977-12261055)
chr1 (135-210)||(46697319-46697392)
chr1 (144-210)||(8138606-8138671)
chr1 (149-247)||(39586062-39586159)
chr1 (18-67)||(16036493-16036542)
chr1 (18-67)||(40166837-40166885)
[»] chr4 (32 HSPs)
chr4 (132-247)||(19102967-19103082)
chr4 (132-247)||(19107579-19107695)
chr4 (132-237)||(8694714-8694819)
chr4 (132-237)||(16422047-16422152)
chr4 (144-247)||(8029315-8029418)
chr4 (173-247)||(48275819-48275893)
chr4 (132-237)||(2820793-2820897)
chr4 (132-233)||(31274515-31274616)
chr4 (132-237)||(31728356-31728460)
chr4 (132-233)||(37263557-37263658)
chr4 (133-237)||(5270413-5270516)
chr4 (132-237)||(12822900-12823005)
chr4 (135-247)||(12875408-12875520)
chr4 (176-247)||(47245173-47245244)
chr4 (132-210)||(37258880-37258958)
chr4 (132-233)||(19907290-19907390)
chr4 (132-233)||(33467997-33468097)
chr4 (132-233)||(51698930-51699031)
chr4 (132-237)||(55252645-55252751)
chr4 (173-244)||(8028141-8028209)
chr4 (172-210)||(12878942-12878980)
chr4 (17-67)||(47245016-47245066)
chr4 (144-212)||(28601631-28601699)
chr4 (132-236)||(29349198-29349300)
chr4 (132-208)||(32220583-32220659)
chr4 (178-237)||(5925794-5925853)
chr4 (173-208)||(33462376-33462411)
chr4 (179-237)||(13060515-13060573)
chr4 (173-215)||(29984993-29985035)
chr4 (144-223)||(13064817-13064893)
chr4 (18-63)||(19102853-19102898)
chr4 (23-67)||(8029515-8029559)
[»] chr2 (28 HSPs)
chr2 (132-247)||(31329063-31329178)
chr2 (132-247)||(31335784-31335899)
chr2 (132-247)||(42925656-42925769)
chr2 (150-247)||(28604105-28604201)
chr2 (132-237)||(18345417-18345522)
chr2 (132-237)||(12797930-12798036)
chr2 (132-233)||(30651915-30652016)
chr2 (132-237)||(9179716-9179823)
chr2 (132-237)||(9184407-9184514)
chr2 (133-237)||(20101640-20101744)
chr2 (132-237)||(17974341-17974445)
chr2 (132-237)||(25496374-25496479)
chr2 (132-237)||(17967954-17968058)
chr2 (144-237)||(19891497-19891590)
chr2 (132-208)||(29678679-29678755)
chr2 (143-233)||(1934003-1934093)
chr2 (144-247)||(32080390-32080494)
chr2 (175-237)||(12361289-12361351)
chr2 (135-227)||(44630447-44630540)
chr2 (132-243)||(15446267-15446377)
chr2 (132-198)||(24537052-24537118)
chr2 (132-208)||(19896951-19897025)
chr2 (132-237)||(25477279-25477384)
chr2 (18-67)||(44630608-44630657)
chr2 (32-67)||(28603987-28604022)
chr2 (32-67)||(42925834-42925869)
chr2 (18-67)||(31328949-31328998)
chr2 (18-67)||(31335670-31335719)
[»] scaffold0011 (1 HSPs)
scaffold0011 (133-247)||(64875-64988)
[»] chr3 (24 HSPs)
chr3 (132-237)||(757354-757459)
chr3 (132-237)||(20520962-20521067)
chr3 (132-244)||(3656240-3656352)
chr3 (132-237)||(18473007-18473112)
chr3 (179-247)||(29351276-29351344)
chr3 (132-233)||(7570209-7570310)
chr3 (132-237)||(55326778-55326882)
chr3 (132-237)||(14437683-14437785)
chr3 (132-233)||(23660483-23660584)
chr3 (132-233)||(23665115-23665216)
chr3 (177-247)||(38891162-38891232)
chr3 (173-237)||(46965054-46965118)
chr3 (149-247)||(2206812-2206909)
chr3 (132-237)||(18468213-18468318)
chr3 (144-233)||(20175404-20175492)
chr3 (132-235)||(12970800-12970903)
chr3 (132-238)||(55432228-55432331)
chr3 (149-237)||(27709947-27710034)
chr3 (173-226)||(37834071-37834124)
chr3 (186-237)||(32473134-32473185)
chr3 (33-67)||(2206986-2207020)
chr3 (132-210)||(7860709-7860787)
chr3 (18-67)||(3656420-3656469)
chr3 (18-67)||(29351114-29351163)
[»] scaffold0054 (3 HSPs)
scaffold0054 (132-247)||(26442-26557)
scaffold0054 (132-237)||(30178-30283)
scaffold0054 (18-67)||(26328-26377)
[»] chr7 (20 HSPs)
chr7 (132-247)||(26286136-26286253)
chr7 (133-226)||(15973725-15973818)
chr7 (132-237)||(42625568-42625673)
chr7 (132-244)||(13313297-13313409)
chr7 (132-247)||(30259263-30259378)
chr7 (132-233)||(4931224-4931325)
chr7 (135-237)||(2595774-2595876)
chr7 (132-212)||(4580466-4580546)
chr7 (149-237)||(12802301-12802388)
chr7 (132-237)||(3880969-3881077)
chr7 (132-237)||(12257023-12257127)
chr7 (132-237)||(44508286-44508391)
chr7 (132-232)||(23247554-23247653)
chr7 (179-233)||(10392081-10392135)
chr7 (135-237)||(21672209-21672310)
chr7 (144-210)||(23151703-23151769)
chr7 (132-233)||(3046575-3046675)
chr7 (18-67)||(30258968-30259017)
chr7 (18-67)||(6590172-6590221)
chr7 (182-226)||(10387347-10387391)
[»] scaffold0352 (1 HSPs)
scaffold0352 (132-237)||(8110-8215)
[»] scaffold0002 (2 HSPs)
scaffold0002 (132-233)||(5065-5166)
scaffold0002 (136-210)||(442957-443030)
[»] chr8 (16 HSPs)
chr8 (132-233)||(7002646-7002747)
chr8 (132-237)||(38181272-38181377)
chr8 (132-233)||(40124888-40124989)
chr8 (132-210)||(17021257-17021334)
chr8 (132-210)||(17551694-17551771)
chr8 (132-237)||(1808452-1808556)
chr8 (132-237)||(1909937-1910042)
chr8 (132-210)||(44924938-44925016)
chr8 (132-212)||(17953162-17953241)
chr8 (132-210)||(15950589-15950667)
chr8 (132-237)||(18875375-18875480)
chr8 (132-196)||(33417531-33417595)
chr8 (132-237)||(28559107-28559211)
chr8 (177-208)||(17798093-17798124)
chr8 (132-198)||(26780105-26780170)
chr8 (132-237)||(2966586-2966691)
[»] scaffold0690 (1 HSPs)
scaffold0690 (136-226)||(6237-6327)
[»] scaffold0057 (1 HSPs)
scaffold0057 (132-233)||(36123-36223)
[»] scaffold0240 (1 HSPs)
scaffold0240 (177-233)||(5015-5071)


Alignment Details
Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 132 - 247
Target Start/End: Original strand, 12689970 - 12690084
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||| |||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||     
T  12689970 cactactaatgtgtgtgttctattttatgtgggactccac-actctattttttcaattcacacaacactagatcaaagtttaataatttggtgtttaatt 12690068  T
Q  232 ttccaaccttccaatt 247  Q
    ||||||||||||||||    
T  12690069 ttccaaccttccaatt 12690084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 144 - 247
Target Start/End: Complemental strand, 12797865 - 12797762
Alignment:
Q  144 gtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatcttccaaccttcc 243  Q
    ||||||||||||||||||| ||| |  | |||||||||||||||||||||||||||||||||||||| | || |||||||||| |||||||||||||| |    
T  12797865 gtgttttctattttatgtgggacccacacactctattttttcaattcacacaacactagatcaaagtctaattacttggtgtttaatcttccaacctttc 12797766  T
Q  244 aatt 247  Q
    ||||    
T  12797765 aatt 12797762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 132 - 237
Target Start/End: Complemental strand, 17963653 - 17963548
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||| |||||||||||||| ||| || | ||||||||||||||||||||||| || ||||||||||| |  | |||||||||| ||||    
T  17963653 cactactaatgtgtgtgttctattttatgtgggacccccacactctattttttcaattcacacatcattagatcaaagtatagttacttggtgtttaatc 17963554  T
Q  232 ttccaa 237  Q
    ||||||    
T  17963553 ttccaa 17963548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 233
Target Start/End: Complemental strand, 6406955 - 6406854
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||| ||||||||||||   ||| || | |||||||||||||||||||||||||| ||||||||||| | || |||||||||| ||||    
T  6406955 cactactaatgtgtgtgttctattttatgcaggacccccacactctattttttcaattcacacaacaatagatcaaagtataattacttggtgtttaatc 6406856  T
Q  232 tt 233  Q
    ||    
T  6406855 tt 6406854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 136 - 237
Target Start/End: Original strand, 17600382 - 17600483
Alignment:
Q  136 actaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatcttcc 235  Q
    |||||||  ||| |||||||||||||| ||| |  | |||||||||||||||||||||||||| ||||||||||| | || |||||||||| ||||||||    
T  17600382 actaatgtttgtgttctattttatgtgggaccctcacactctattttttcaattcacacaacattagatcaaagtatgattacttggtgtttaatcttcc 17600481  T
Q  236 aa 237  Q
    ||    
T  17600482 aa 17600483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 234
Target Start/End: Complemental strand, 11569779 - 11569685
Alignment:
Q  139 aatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatcttc 234  Q
    |||| |||| |||||||||||||| ||| |||  |||||||||||||||||||||||||| ||||||||||| | || |||||||||| |||||||    
T  11569779 aatgtgtgtgttctattttatgtgggaccccac-actctattttttcaattcacacaacattagatcaaagtataattacttggtgtttaatcttc 11569685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 132 - 247
Target Start/End: Original strand, 19674774 - 19674888
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||| ||| |||| |||||||||||||  ||| || | ||| | ||||| |||||||||||||||||||||||||||| || | |||||||| ||||    
T  19674774 cactactgatgtgtgtgttctattttatgtcggacccccacactat-tttttccaattcacacaacactagatcaaagtttaattatttggtgtttaatc 19674872  T
Q  232 ttccaaccttccaatt 247  Q
    || |||||||||||||    
T  19674873 tttcaaccttccaatt 19674888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 234
Target Start/End: Complemental strand, 11533796 - 11533695
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    |||||| |||| |||| |||||||||||||| ||| |||  ||| |||||||||||||||||||||| ||||||||| | | || |||||||||| ||||    
T  11533796 cactaccaatgtgtgtgttctattttatgtgggaccccac-actttattttttcaattcacacaacattagatcaaactataattacttggtgtttaatc 11533698  T
Q  232 ttc 234  Q
    |||    
T  11533697 ttc 11533695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 234
Target Start/End: Complemental strand, 11559306 - 11559205
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    |||||| |||| |||| |||||||||||||| ||| |||  ||| |||||||||||||||||||||| ||||||||| | | || |||||||||| ||||    
T  11559306 cactaccaatgtgtgtgttctattttatgtgggaccccac-actgtattttttcaattcacacaacattagatcaaactataattacttggtgtttaatc 11559208  T
Q  232 ttc 234  Q
    |||    
T  11559207 ttc 11559205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 233
Target Start/End: Complemental strand, 16835257 - 16835155
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctatt-ttttcaattcacacaacactagatcaaagtttcataacttggtgttcaat 230  Q
    ||||||||||| |||| |||||||||||||| ||| || | |||||||| |||| ||||||||||||| ||||||||||| |  | |||||||||| |||    
T  16835257 cactactaatgtgtgtgttctattttatgtgggacccccacactctattttttttaattcacacaacattagatcaaagtatatttacttggtgtttaat 16835158  T
Q  231 ctt 233  Q
    |||    
T  16835157 ctt 16835155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 132 - 237
Target Start/End: Complemental strand, 20747392 - 20747287
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| ||   |||||||||||||  ||| || | |||||||||||||||||||||||||| || |||||||| | || ||||| |||| ||||    
T  20747392 cactactaatgtgtaagttctattttatgtaggacccccacactctattttttcaattcacacaacattaaatcaaagtataattacttgatgtttaatc 20747293  T
Q  232 ttccaa 237  Q
    ||||||    
T  20747292 ttccaa 20747287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 176 - 237
Target Start/End: Complemental strand, 22694436 - 22694375
Alignment:
Q  176 ctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatcttccaa 237  Q
    ||||||||||||||||||||||| ||||||||||| | || |||||||||| ||||||||||    
T  22694436 ctattttttcaattcacacaacattagatcaaagtataattacttggtgtttaatcttccaa 22694375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 247
Target Start/End: Original strand, 22610512 - 22610625
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||| || |||||||||||  ||| | | | ||||||||||||||  |||||||| ||||||||||| | || ||||||| || ||||    
T  22610512 cactactaatgtgtgtgttttattttatgtggaactgccacaatctattttttcaat--acacaacaatagatcaaagtctaattacttggtatttaatc 22610609  T
Q  232 ttccaaccttccaatt 247  Q
    ||| ||||||||||||    
T  22610610 ttctaaccttccaatt 22610625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 133 - 237
Target Start/End: Original strand, 11428959 - 11429063
Alignment:
Q  133 actactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatct 232  Q
    ||||| |||| ||||  ||||||| ||||| ||| || | |||||||||||||||||||| ||||| ||||||||||| | || |  ||||||| |||||    
T  11428959 actacaaatgtgtgtgctctatttaatgtgggacccccacactctattttttcaattcacgcaacattagatcaaagtataattatctggtgtttaatct 11429058  T
Q  233 tccaa 237  Q
    |||||    
T  11429059 tccaa 11429063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 237
Target Start/End: Complemental strand, 2699210 - 2699104
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctatttttt-caattcacacaacactagatcaaagtttcataacttggtgttcaat 230  Q
    ||||||||||| |||  |||||||||||||| ||| || | ||||||| |||| | |||||||||||| ||||| ||||| | || ||||| |||| |||    
T  2699210 cactactaatgtgtgaattctattttatgtgggacccccacactctatattttaccattcacacaacattagattaaagtataattacttgatgtttaat 2699111  T
Q  231 cttccaa 237  Q
    |||||||    
T  2699110 cttccaa 2699104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 12689858 - 12689908
Alignment:
Q  17 atatcacaacaaatgtaacctaaaattatgggaactgatatccatgaataa 67  Q
    |||||||||||||  ||||||||||||||||||| |||||||||| |||||    
T  12689858 atatcacaacaaacataacctaaaattatgggaagtgatatccataaataa 12689908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 19674660 - 19674709
Alignment:
Q  18 tatcacaacaaatgtaacctaaaattatgggaactgatatccatgaataa 67  Q
    ||||| ||||||  ||||||||||||||||||| ||||||||||||||||    
T  19674660 tatcaaaacaaacataacctaaaattatgggaagtgatatccatgaataa 19674709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 208
Target Start/End: Complemental strand, 11612998 - 11612922
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaa 208  Q
    ||||||||||| |||| || ||||||||||| |||  ||| ||||||||||||||||| | | |||| |||||||||    
T  11612998 cactactaatgtgtgtgttttattttatgtgggacctcaacactctattttttcaatttatataacattagatcaaa 11612922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 237
Target Start/End: Complemental strand, 33686698 - 33686634
Alignment:
Q  173 actctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatcttccaa 237  Q
    |||||||||||||||||||||||| | ||||||||||| | || | ||| |||| ||||||||||    
T  33686698 actctattttttcaattcacacaaaattagatcaaagtataattatttgatgtttaatcttccaa 33686634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 237
Target Start/End: Complemental strand, 12405455 - 12405350
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcga-ctccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaat 230  Q
    ||||||||||| |||| ||||||||||| || || |||||  |||||||||||| |||| |||||||| ||||||||| | | || | ||| |||| |||    
T  12405455 cactactaatgtgtgtgttctattttatttgtgatctccac-actctatttttttaattaacacaacattagatcaaaatataattagttgatgtttaat 12405357  T
Q  231 cttccaa 237  Q
    |||||||    
T  12405356 cttccaa 12405350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 237
Target Start/End: Complemental strand, 19994479 - 19994375
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||| |||||||||| ||| ||| || | |||||||||||| |||||||| |||| | ||| ||||| | || || | ||||| ||||    
T  19994479 cactactaatgtgtgtgttctattttacgtgggacccccacactctatttttt-aattcacataacattcgattaaagtataattacctagtgtttaatc 19994381  T
Q  232 ttccaa 237  Q
    ||||||    
T  19994380 ttccaa 19994375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 132 - 247
Target Start/End: Complemental strand, 35678993 - 35678878
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||| |||||||||||||| |||||  | |||||||||||||||||||||||||||||||||||||||| || ||||| |||| ||||    
T  35678993 cactactaatgtgtgtgttctattttatgtgggactcttacactctattttttcaattcacacaacactagatcaaagtttaattacttgatgtttaatc 35678894  T
Q  232 ttccaaccttccaatt 247  Q
    ||||||||||||||||    
T  35678893 ttccaaccttccaatt 35678878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 144 - 247
Target Start/End: Complemental strand, 9725857 - 9725753
Alignment:
Q  144 gtgttttctattttatgtgcgactccaatactctatttttt-caattcacacaacactagatcaaagtttcataacttggtgttcaatcttccaaccttc 242  Q
    |||| |||||||||||||| |||  | | |||||||||||| ||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||    
T  9725857 gtgtgttctattttatgtgggacatccacactctatttttttcaattcacacaacactatatcaaagtttaataacttggtgtttaatcttccaaccttc 9725758  T
Q  243 caatt 247  Q
    |||||    
T  9725757 caatt 9725753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 132 - 247
Target Start/End: Original strand, 4872883 - 4872998
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    |||||||| || |||| ||||||||||| ||  || || | ||||||||||||||||||||||||||||| |||||||||| |||| |||||||| ||||    
T  4872883 cactactattgtgtgtgttctattttatatggaacccccacactctattttttcaattcacacaacactaaatcaaagtttaataatttggtgtttaatc 4872982  T
Q  232 ttccaaccttccaatt 247  Q
    |||||||||| |||||    
T  4872983 ttccaacctttcaatt 4872998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 132 - 237
Target Start/End: Original strand, 26668279 - 26668384
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||| |||||||||||||| ||| || | |||||||||||||||||||||||||| ||||||||||| | || | |||||||| ||||    
T  26668279 cactactaatgtgtgtgttctattttatgtgggacccccacactctattttttcaattcacacaacattagatcaaagtataattatttggtgtttaatc 26668378  T
Q  232 ttccaa 237  Q
    ||||||    
T  26668379 ttccaa 26668384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 132 - 237
Target Start/End: Original strand, 26939876 - 26939981
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||| |||||||||||||| ||| || | |||||||||||||||||||||||||| ||||||||||| | || | |||||||| ||||    
T  26939876 cactactaatgtgtgtgttctattttatgtgggacccccacactctattttttcaattcacacaacattagatcaaagtataattatttggtgtttaatc 26939975  T
Q  232 ttccaa 237  Q
    ||||||    
T  26939976 ttccaa 26939981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 132 - 237
Target Start/End: Original strand, 36424639 - 36424744
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||| |||||||||||||| ||| || | |||||||||||||||||||||||||| ||||||| ||| | || |||||||||| ||||    
T  36424639 cactactaatgtgtgtgttctattttatgtgagacccccacactctattttttcaattcacacaacattagatcatagtataattacttggtgtttaatc 36424738  T
Q  232 ttccaa 237  Q
    ||||||    
T  36424739 ttccaa 36424744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 132 - 237
Target Start/End: Original strand, 7452756 - 7452861
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||| |||||||||||||| ||| || | |||||||||||||||||||||||||| ||||||| ||| | || |||| ||||| ||||    
T  7452756 cactactaatgtgtgtgttctattttatgtgggacccccacactctattttttcaattcacacaacattagatcagagtataattactttgtgtttaatc 7452855  T
Q  232 ttccaa 237  Q
    ||||||    
T  7452856 ttccaa 7452861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 132 - 233
Target Start/End: Complemental strand, 37247894 - 37247793
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||| |||||||||||| | ||| || | |||||||||||||||||||||||||| ||||||||||| | || |||||||||| ||||    
T  37247894 cactactaatgtgtgtgttctattttatgcgggacccccacactctattttttcaattcacacaacattagatcaaagtataattacttggtgtttaatc 37247795  T
Q  232 tt 233  Q
    ||    
T  37247794 tt 37247793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 237
Target Start/End: Complemental strand, 6154527 - 6154422
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||| |||||||||||||| ||| || | |||||||||||||||||||||||||| ||||||||| | | || ||||| |||| |||     
T  6154527 cactactaatgtgtgtgttctattttatgtgggacccccacactctattttttcaattcacacaacattagatcaaaatataattacttgatgtttaatt 6154428  T
Q  232 ttccaa 237  Q
    ||||||    
T  6154427 ttccaa 6154422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 237
Target Start/End: Complemental strand, 29167068 - 29166963
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||| |||||||||||||  ||| |  | |||||||||||||||||||||||||| || |||||||| | || |||||||||| ||||    
T  29167068 cactactaatgtgtgtgttctattttatgtaggaccctcacactctattttttcaattcacacaacattaaatcaaagtataattacttggtgtttaatc 29166969  T
Q  232 ttccaa 237  Q
    ||||||    
T  29166968 ttccaa 29166963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 144 - 237
Target Start/End: Complemental strand, 37646138 - 37646045
Alignment:
Q  144 gtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatcttccaa 237  Q
    |||| |||||||||||||| ||| || | |||||||||||||||||||||||||| ||||||||||| | || ||||| |||| ||||||||||    
T  37646138 gtgtgttctattttatgtgggacccccacactctattttttcaattcacacaacattagatcaaagtataattacttgatgtttaatcttccaa 37646045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 132 - 237
Target Start/End: Complemental strand, 23757259 - 23757154
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||| ||||| |||| ||||||||| |||| ||| || | |||||||||||||||||||||||||| || ||| |||| | || |||||||||| ||||    
T  23757259 cactaataatgtgtgtgttctattttgtgtgggacccccacactctattttttcaattcacacaacattaaatctaagtataattacttggtgtttaatc 23757160  T
Q  232 ttccaa 237  Q
    ||||||    
T  23757159 ttccaa 23757154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 132 - 237
Target Start/End: Complemental strand, 23822715 - 23822610
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||| ||||| |||| ||||||||| |||| ||| || | |||||||||||||||||||||||||| || ||| |||| | || |||||||||| ||||    
T  23822715 cactaataatgtgtgtgttctattttgtgtgggacccccacactctattttttcaattcacacaacattaaatctaagtataattacttggtgtttaatc 23822616  T
Q  232 ttccaa 237  Q
    ||||||    
T  23822615 ttccaa 23822610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 136 - 247
Target Start/End: Original strand, 17162862 - 17162974
Alignment:
Q  136 actaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttca-taacttggtgttcaatcttc 234  Q
    ||||||| |||| |||||||||||||| |||||| | | ||||||||||||||||| |||||| ||||||| | | | | |||||||||||| | |||||    
T  17162862 actaatgtgtgtgttctattttatgtgggactcccacattctattttttcaattcatacaacattagatcataatctaattaacttggtgtttagtcttc 17162961  T
Q  235 caaccttccaatt 247  Q
    |||||||| ||||    
T  17162962 caaccttcaaatt 17162974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 132 - 204
Target Start/End: Original strand, 36430519 - 36430591
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagat 204  Q
    ||||||||||| |||| |||||||||||||| ||| || | |||||||||||||||||||||||||| |||||    
T  36430519 cactactaatgtgtgtgttctattttatgtgggacccccacactctattttttcaattcacacaacattagat 36430591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 138 - 233
Target Start/End: Original strand, 39519392 - 39519487
Alignment:
Q  138 taatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatctt 233  Q
    ||||| |||| |||||||||||| | ||| || | |||||||||||||||||||||||||| ||||||||||| |  | |||||||||| ||||||    
T  39519392 taatgtgtgtgttctattttatgcgggacccccacactctattttttcaattcacacaacattagatcaaagtatatttacttggtgtttaatctt 39519487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 206
Target Start/End: Original strand, 17159378 - 17159452
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatca 206  Q
    ||||||||||| |||| |||||||||||||| ||| || | | ||||||||||||||||| ||||||||||||||    
T  17159378 cactactaatgtgtgtcttctattttatgtgggacacccacattctattttttcaattcatacaacactagatca 17159452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 208
Target Start/End: Complemental strand, 6511698 - 6511622
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaa 208  Q
    ||||||||||| |||  |||||||||||||| |||||| | |||  ||||||||||||||||||||| |||||||||    
T  6511698 cactactaatgtgtgagttctattttatgtgggactcccacacttaattttttcaattcacacaacattagatcaaa 6511622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 247
Target Start/End: Original strand, 23689072 - 23689187
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    |||||| |||| |||| |||||||||||||| ||  || | |||| ||||||||||| |||| | |||||||||||||| | ||   |||||||| ||||    
T  23689072 cactacgaatgtgtgtgttctattttatgtgggatccccacactcaattttttcaatccacaaatcactagatcaaagtctaattgtttggtgtttaatc 23689171  T
Q  232 ttccaaccttccaatt 247  Q
    |||||||||| |||||    
T  23689172 ttccaacctttcaatt 23689187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 237
Target Start/End: Complemental strand, 20180248 - 20180145
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||| |||||||||||||| |  ||| | |  ||||||| ||||||||||||||| ||||| ||||| | || |||||||||| ||||    
T  20180248 cactactaatgtgtgtgttctattttatgtggg--tcccacatcctattttctcaattcacacaacattagattaaagtataattacttggtgtttaatc 20180151  T
Q  232 ttccaa 237  Q
    ||||||    
T  20180150 ttccaa 20180145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 247
Target Start/End: Complemental strand, 22832560 - 22832486
Alignment:
Q  173 actctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatcttccaaccttccaatt 247  Q
    ||||||||||||||||||||||||||||| |||| | | | ||  ||||||||| |||||||||||||| |||||    
T  22832560 actctattttttcaattcacacaacactaaatcataatctaattccttggtgtttaatcttccaaccttacaatt 22832486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 234
Target Start/End: Complemental strand, 37537019 - 37536930
Alignment:
Q  144 gtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatcttc 234  Q
    |||| |||||||||||||| ||| |||  |||||||||||||||||||||||||| || |||||||| | || ||||| |||| |||||||    
T  37537019 gtgtgttctattttatgtgggaccccac-actctattttttcaattcacacaacattatatcaaagtataattacttgatgtttaatcttc 37536930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 40150243 - 40150301
Alignment:
Q  179 ttttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatcttccaa 237  Q
    |||||||||||||||||||| ||||||||||| | || |||||||||| ||||||||||    
T  40150243 ttttttcaattcacacaacattagatcaaagtataattacttggtgtttaatcttccaa 40150301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 237
Target Start/End: Complemental strand, 10759456 - 10759352
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| || | |||||||||||||| ||| || | |||||||||||| ||||||||||||| || |||||| | | || |||| ||||| ||||    
T  10759456 cactactaatgtgtctgttctattttatgtgggacccctacactctatttttttaattcacacaacattaaatcaaaatataattactt-gtgtttaatc 10759358  T
Q  232 ttccaa 237  Q
    ||||||    
T  10759357 ttccaa 10759352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 138 - 210
Target Start/End: Original strand, 39524031 - 39524103
Alignment:
Q  138 taatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagt 210  Q
    ||||| |||| ||||||||||||   ||| || | |||||||||||||||||||||||||| |||||||||||    
T  39524031 taatgtgtgtgttctattttatgctggacccccacactctattttttcaattcacacaacattagatcaaagt 39524103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 35679107 - 35679058
Alignment:
Q  18 tatcacaacaaatgtaacctaaaattatgggaactgatatccatgaataa 67  Q
    ||||||||||||  ||||||||||||||||||| | ||||||||||||||    
T  35679107 tatcacaacaaacataacctaaaattatgggaagtaatatccatgaataa 35679058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 4872774 - 4872823
Alignment:
Q  18 tatcacaacaaatgtaacctaaaattatgggaactgatatccatgaataa 67  Q
    ||||||||||||  ||||||||| ||||||| | ||||||||||||||||    
T  4872774 tatcacaacaaacataacctaaagttatggggagtgatatccatgaataa 4872823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 132 - 247
Target Start/End: Complemental strand, 23191932 - 23191819
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||| ||||||||||||||  || || | |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  23191932 cactactaatgtgtgtgttctattttatgtg--acccccacactctattttttcaattcacacaacactagatcaaagtttaataacttggtgtttaatc 23191835  T
Q  232 ttccaaccttccaatt 247  Q
    ||||||| ||||||||    
T  23191834 ttccaacgttccaatt 23191819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 132 - 247
Target Start/End: Original strand, 40166941 - 40167056
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||| ||| |||| ||||||||||| || ||| || | | |||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||    
T  40166941 cactactgatgtgtgtcttctattttatttgggacccctacattctattttttcaattcacacaatactagatcaaagtttaataacttggtgtttaatc 40167040  T
Q  232 ttccaaccttccaatt 247  Q
    ||||||||||||||||    
T  40167041 ttccaaccttccaatt 40167056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 132 - 241
Target Start/End: Original strand, 16036607 - 16036716
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||| |||||||||||||| |||  | | ||||||||||||||||||||||||||||||||||||||||  | |||||||||| ||||    
T  16036607 cactactaatgtgtgtgttctattttatgtgggacctccacactctattttttcaattcacacaacactagatcaaagtttagttacttggtgtttaatc 16036706  T
Q  232 ttccaacctt 241  Q
    ||||||||||    
T  16036707 ttccaacctt 16036716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 132 - 237
Target Start/End: Original strand, 10136326 - 10136431
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||| |||||||||||||| ||| || | |||||||||||||||||||||||||| ||||||||||| | || |||||||||| ||||    
T  10136326 cactactaatgtgtgtgttctattttatgtgggacccccacactctattttttcaattcacacaacattagatcaaagtataattacttggtgtttaatc 10136425  T
Q  232 ttccaa 237  Q
    ||||||    
T  10136426 ttccaa 10136431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 132 - 233
Target Start/End: Original strand, 25844757 - 25844858
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||| |||||||||||| | ||| || | |||||||||||||||||||||||||| ||||||||||| | || |||||||||| ||||    
T  25844757 cactactaatgtgtgtgttctattttatgcgggacccccacactctattttttcaattcacacaacattagatcaaagtataattacttggtgtttaatc 25844856  T
Q  232 tt 233  Q
    ||    
T  25844857 tt 25844858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 132 - 226
Target Start/End: Complemental strand, 51040616 - 51040522
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgtt 226  Q
    ||||||||||| |||| |||||||| ||||| |||||| | ||| |||||||||||||||||||||| ||||||||||| | || ||||||||||    
T  51040616 cactactaatgtgtgtgttctatttcatgtgggactcccacactttattttttcaattcacacaacattagatcaaagtataattacttggtgtt 51040522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 237
Target Start/End: Original strand, 38622190 - 38622295
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||  |||  |||||||||||||| |||||| | |||||||||||||||||||||||||| ||||||||||| | || ||||| | || ||||    
T  38622190 cactactaatatgtgagttctattttatgtgggactcccacactctattttttcaattcacacaacattagatcaaagtataattacttgatttttaatc 38622289  T
Q  232 ttccaa 237  Q
    ||||||    
T  38622290 ttccaa 38622295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 210
Target Start/End: Complemental strand, 16648725 - 16648646
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactcca-atactctattttttcaattcacacaacactagatcaaagt 210  Q
    ||||||||||| |||| |||||||||||||| ||| ||  | ||||||||||||||||| |||||||| |||||||||||    
T  16648725 cactactaatgtgtgtgttctattttatgtgggaccccctacactctattttttcaatttacacaacattagatcaaagt 16648646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 12260977 - 12261055
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagttt 212  Q
    |||||||||||||||| |||||||||||||| ||| || | ||||||||||||  ||| |||||| |||||||||||||||    
T  12260977 cactactaatgagtgtgttctattttatgtgggac-cccacactctatttttt-tattaacacaatactagatcaaagttt 12261055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 135 - 210
Target Start/End: Original strand, 46697319 - 46697392
Alignment:
Q  135 tactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagt 210  Q
    ||||||||  ||| || ||||||||||| ||| |  ||||||||||||||||||||||||||||||| ||||||||    
T  46697319 tactaatgtatgtgttatattttatgtgggaccc--atactctattttttcaattcacacaacactaaatcaaagt 46697392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 8138606 - 8138671
Alignment:
Q  144 gtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagt 210  Q
    |||| |||||||||||||| ||| || |||||||||||||||||||||||||| | || ||||||||    
T  8138606 gtgtgttctattttatgtgtgac-ccgatactctattttttcaattcacacaatattatatcaaagt 8138671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 149 - 247
Target Start/End: Complemental strand, 39586159 - 39586062
Alignment:
Q  149 ttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatcttccaaccttccaatt 247  Q
    |||||||||||||| |||  | | ||||||||||||||||| |||||| |||| |||||||||| |||||||| | || |||||| |||| || |||||    
T  39586159 ttctattttatgtgggacctccacactctattttttcaatt-acacaatactatatcaaagtttaataacttgatctttaatctttcaacatttcaatt 39586062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 16036493 - 16036542
Alignment:
Q  18 tatcacaacaaatgtaacctaaaattatgggaactgatatccatgaataa 67  Q
    ||||||||||||  |||||||||||||||| || |||||| |||||||||    
T  16036493 tatcacaacaaacataacctaaaattatggaaagtgatattcatgaataa 16036542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 40166837 - 40166885
Alignment:
Q  18 tatcacaacaaatgtaacctaaaattatgggaactgatatccatgaataa 67  Q
    ||||||||||||  ||||||||||||| ||||| ||||||||||||||||    
T  40166837 tatcacaacaaacataacctaaaatta-gggaagtgatatccatgaataa 40166885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 132 - 247
Target Start/End: Original strand, 19102967 - 19103082
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||| ||||| |||| |||||||||||||| |||  | | |||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||    
T  19102967 cactattaatgtgtgtgttctattttatgtgggacctccacactctattttttcaattcacacaacactagatcaaagtttaataacttggagtttaatc 19103066  T
Q  232 ttccaaccttccaatt 247  Q
    |||||||| |||||||    
T  19103067 ttccaaccgtccaatt 19103082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 132 - 247
Target Start/End: Original strand, 19107579 - 19107695
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacact-agatcaaagtttcataacttggtgttcaat 230  Q
    ||||||||||| |||| |||||||||||||| |||  | | ||||||| |||||||||||||||| ||| |||||||||||| ||||||||||||| |||    
T  19107579 cactactaatgtgtgtgttctattttatgtgggacctccacactctatattttcaattcacacaatacttagatcaaagtttaataacttggtgtttaat 19107678  T
Q  231 cttccaaccttccaatt 247  Q
    |||||||||||||||||    
T  19107679 cttccaaccttccaatt 19107695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 132 - 237
Target Start/End: Original strand, 8694714 - 8694819
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||| |||||||||||||| ||| || | |||||||||||||||||||||||||| ||||||||||| | || |||||||||| ||||    
T  8694714 cactactaatgtgtgtgttctattttatgtgggacccccacactctattttttcaattcacacaacattagatcaaagtataattacttggtgtttaatc 8694813  T
Q  232 ttccaa 237  Q
    ||||||    
T  8694814 ttccaa 8694819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 132 - 237
Target Start/End: Original strand, 16422047 - 16422152
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||| |||||||||||||| ||| || | |||||||||||||||||||||||||| ||||||||||| | || |||||||||| ||||    
T  16422047 cactactaatgcgtgtgttctattttatgtgggacccccacactctattttttcaattcacacaacattagatcaaagtataattacttggtgtttaatc 16422146  T
Q  232 ttccaa 237  Q
    ||||||    
T  16422147 ttccaa 16422152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 144 - 247
Target Start/End: Complemental strand, 8029418 - 8029315
Alignment:
Q  144 gtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatcttccaaccttcc 243  Q
    |||| |||||||||||||| ||| || | |||||||||||||||||||||||| ||||||||||||||| || |||||||||| ||||||| |||||||     
T  8029418 gtgtgttctattttatgtgggacccccacactctattttttcaattcacacaatactagatcaaagtttaattacttggtgtttaatcttctaaccttct 8029319  T
Q  244 aatt 247  Q
    ||||    
T  8029318 aatt 8029315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 173 - 247
Target Start/End: Complemental strand, 48275893 - 48275819
Alignment:
Q  173 actctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatcttccaaccttccaatt 247  Q
    ||||||||||||||||||||||||||| |||||||||||| |||||||| |||| ||||||||||||||||||||    
T  48275893 actctattttttcaattcacacaacacaagatcaaagtttaataacttgatgtttaatcttccaaccttccaatt 48275819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 132 - 237
Target Start/End: Original strand, 2820793 - 2820897
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||| |||||||||||||| ||| || | |||||| ||||||||||||||||||||||||||||| | | || |||||||||| ||||    
T  2820793 cactactaatgtgtgtgttctattttatgtgggacccccacactctaatttttcaattcacacaacactagatcaaa-tataattacttggtgtttaatc 2820891  T
Q  232 ttccaa 237  Q
    ||||||    
T  2820892 ttccaa 2820897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 132 - 233
Target Start/End: Original strand, 31274515 - 31274616
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||| |||||||||||| | ||| || | |||||||||||||||||||||||||| ||||||||||| | || |||||||||| ||||    
T  31274515 cactactaatgtgtgtgttctattttatgcgggacccccacactctattttttcaattcacacaacattagatcaaagtataattacttggtgtttaatc 31274614  T
Q  232 tt 233  Q
    ||    
T  31274615 tt 31274616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 132 - 237
Target Start/End: Complemental strand, 31728460 - 31728356
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||| |||||||||||||| ||| |||  |||||||||||||||||||||||||| ||||||||| | | || |||||||||| ||||    
T  31728460 cactactaatgtgtgtgttctattttatgtgggaccccac-actctattttttcaattcacacaacattagatcaaattataattacttggtgtttaatc 31728362  T
Q  232 ttccaa 237  Q
    ||||||    
T  31728361 ttccaa 31728356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 132 - 233
Target Start/End: Complemental strand, 37263658 - 37263557
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||| |||||||||||| | ||| || | |||||||||||||||||||||||||| ||||||||||| | || |||||||||| ||||    
T  37263658 cactactaatgtgtgtgttctattttatgcgggacccccacactctattttttcaattcacacaacattagatcaaagtataattacttggtgtttaatc 37263559  T
Q  232 tt 233  Q
    ||    
T  37263558 tt 37263557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 133 - 237
Target Start/End: Complemental strand, 5270516 - 5270413
Alignment:
Q  133 actactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatct 232  Q
    |||||||||| |||| |||||||||||||| ||| |||  | |||||||||||||||||||||||| ||||||||||| | || |||||||||| |||||    
T  5270516 actactaatgtgtgtgttctattttatgtgggaccccac-attctattttttcaattcacacaacattagatcaaagtataattacttggtgtttaatct 5270418  T
Q  233 tccaa 237  Q
    |||||    
T  5270417 tccaa 5270413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 237
Target Start/End: Complemental strand, 12823005 - 12822900
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||  |||||||||||||| ||| || | |||||||||||||||||||||||||| ||||||||||| | || | ||||||||  |||    
T  12823005 cactactaatgtgtgagttctattttatgtgggacccccacactctattttttcaattcacacaacattagatcaaagtataattatttggtgtttgatc 12822906  T
Q  232 ttccaa 237  Q
    ||||||    
T  12822905 ttccaa 12822900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 135 - 247
Target Start/End: Original strand, 12875408 - 12875520
Alignment:
Q  135 tactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatcttc 234  Q
    |||||||| |||  ||||||||||||   ||| || | |||||||||||||||||||||||||||||||| ||||| | || |||||||||| |||||||    
T  12875408 tactaatgtgtgggttctattttatgcaggacccccacactctattttttcaattcacacaacactagatgaaagtctaattacttggtgtttaatcttc 12875507  T
Q  235 caaccttccaatt 247  Q
     ||| ||||||||    
T  12875508 taactttccaatt 12875520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 247
Target Start/End: Original strand, 47245173 - 47245244
Alignment:
Q  176 ctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatcttccaaccttccaatt 247  Q
    ||||||||||||||||||||| ||||||||||| ||| ||||||| ||||| |||||| |||||||||||||    
T  47245173 ctattttttcaattcacacaatactagatcaaactttaataacttagtgtttaatctttcaaccttccaatt 47245244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 132 - 210
Target Start/End: Complemental strand, 37258958 - 37258880
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagt 210  Q
    ||||||||||| |||| |||||||||||| | ||| || | |||||||||||||||||||||||||| |||||||||||    
T  37258958 cactactaatgtgtgtgttctattttatgcgggacccccacactctattttttcaattcacacaacattagatcaaagt 37258880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 132 - 233
Target Start/End: Original strand, 19907290 - 19907390
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    |||| |||||| |||| |||||||||||||| ||| |||  ||| |||||||||||||||||||||||||||||||| | | || |||||||||| ||||    
T  19907290 cactgctaatgtgtgtgttctattttatgtgagaccccac-actttattttttcaattcacacaacactagatcaaaatataattacttggtgtttaatc 19907388  T
Q  232 tt 233  Q
    ||    
T  19907389 tt 19907390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 132 - 233
Target Start/End: Complemental strand, 33468097 - 33467997
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||| |||||||||||||| ||  || | ||||||||||||||||| |||||||| ||||||||||| | || |||||||||| ||||    
T  33468097 cactactaatgtgtgtgttctattttatgtgggaa-cctacactctattttttcaatttacacaacattagatcaaagtataattacttggtgtttaatc 33467999  T
Q  232 tt 233  Q
    ||    
T  33467998 tt 33467997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 132 - 233
Target Start/End: Original strand, 51698930 - 51699031
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||| |||||||||||||| ||| || | |||||||||||||||||||| ||||| ||| ||||||| | || | |||||||| ||||    
T  51698930 cactactaatgtgtgtgttctattttatgtgggacccccacactctattttttcaattcacgcaacattagttcaaagtataattatttggtgtttaatc 51699029  T
Q  232 tt 233  Q
    ||    
T  51699030 tt 51699031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 237
Target Start/End: Original strand, 55252645 - 55252751
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctatttt-ttcaattcacacaacactagatcaaagtttcataacttggtgttcaat 230  Q
    ||||||||||| |||| |||||||||||||| |||  | | |||||||||| |||||||||||||||| || |||||||| | || ||||| |||| | |    
T  55252645 cactactaatgtgtgtgttctattttatgtgggaccaccacactctatttttttcaattcacacaacattaaatcaaagtataattacttgatgtttagt 55252744  T
Q  231 cttccaa 237  Q
    |||||||    
T  55252745 cttccaa 55252751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 173 - 244
Target Start/End: Complemental strand, 8028209 - 8028141
Alignment:
Q  173 actctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatcttccaaccttcca 244  Q
    |||||||||||||||||||||||||| | ||||||||||| || |||   |||| |||||||||||||||||    
T  8028209 actctattttttcaattcacacaacattcgatcaaagtttaattact---tgtttaatcttccaaccttcca 8028141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 210
Target Start/End: Original strand, 12878942 - 12878980
Alignment:
Q  172 tactctattttttcaattcacacaacactagatcaaagt 210  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  12878942 tactctattttttcaattcacacaacactagatgaaagt 12878980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 47245016 - 47245066
Alignment:
Q  17 atatcacaacaaatgtaacctaaaattatgggaactgatatccatgaataa 67  Q
    |||||||||||||  ||||||||||||||||||| ||||||| ||||||||    
T  47245016 atatcacaacaaacataacctaaaattatgggaaatgatatctatgaataa 47245066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 212
Target Start/End: Original strand, 28601631 - 28601699
Alignment:
Q  144 gtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagttt 212  Q
    |||| |||||||||||||| ||| || | | |||||||||| |||||||||  ||||||||||||||||    
T  28601631 gtgtgttctattttatgtgggacccccacattctatttttttaattcacaccgcactagatcaaagttt 28601699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 236
Target Start/End: Complemental strand, 29349300 - 29349198
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    |||| |||||| |||  |||||||||||||| |||  ||  |||||||||||||||||||| |||||||| |||||||| | || |||| ||||| ||||    
T  29349300 cactgctaatgtgtgagttctattttatgtgggacctcac-actctattttttcaattcactcaacacta-atcaaagtataattacttagtgtttaatc 29349203  T
Q  232 ttcca 236  Q
    |||||    
T  29349202 ttcca 29349198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 208
Target Start/End: Complemental strand, 32220659 - 32220583
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaa 208  Q
    ||||| ||||| || | |||||||||||||| ||| || | |||||||||||| ||||||||||| | |||||||||    
T  32220659 cactaataatgtgtatgttctattttatgtgggacccccacactctatttttttaattcacacaatattagatcaaa 32220583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 237
Target Start/End: Complemental strand, 5925853 - 5925794
Alignment:
Q  178 attttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatcttccaa 237  Q
    ||||||||||||||||||||| || |||||||| | || ||||||| || ||||||||||    
T  5925853 attttttcaattcacacaacattatatcaaagtataattacttggtatttaatcttccaa 5925794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 208
Target Start/End: Complemental strand, 33462411 - 33462376
Alignment:
Q  173 actctattttttcaattcacacaacactagatcaaa 208  Q
    |||||||||||||||||||||||||| |||||||||    
T  33462411 actctattttttcaattcacacaacattagatcaaa 33462376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 13060515 - 13060573
Alignment:
Q  179 ttttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatcttccaa 237  Q
    |||||||||||||||||| | ||||||||||| | || |||||| ||| ||||||||||    
T  13060515 ttttttcaattcacacaatattagatcaaagtataattacttggggtttaatcttccaa 13060573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 215
Target Start/End: Complemental strand, 29985035 - 29984993
Alignment:
Q  173 actctattttttcaattcacacaacactagatcaaagtttcat 215  Q
    |||||||||||||||||||||||||||||  ||||||| ||||    
T  29985035 actctattttttcaattcacacaacactacctcaaagtctcat 29984993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 223
Target Start/End: Complemental strand, 13064893 - 13064817
Alignment:
Q  144 gtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggt 223  Q
    |||| |||||||||||||| ||| || | |||||||||||||||||||   |||| ||||||||||| | || |||||||    
T  13064893 gtgtgttctattttatgtgggacccccacactctattttttcaattca---aacattagatcaaagtataattacttggt 13064817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 19102853 - 19102898
Alignment:
Q  18 tatcacaacaaatgtaacctaaaattatgggaactgatatccatga 63  Q
    ||||||||||||  ||||||||||||||| ||| ||||||||||||    
T  19102853 tatcacaacaaacataacctaaaattatgagaagtgatatccatga 19102898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 8029559 - 8029515
Alignment:
Q  23 caacaaatgtaacctaaaattatgggaactgatatccatgaataa 67  Q
    |||||||  |||||||| |||||||||| ||||||||||||||||    
T  8029559 caacaaacataacctaagattatgggaagtgatatccatgaataa 8029515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 132 - 247
Target Start/End: Original strand, 31329063 - 31329178
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||| | || | |||||||||| ||| |||  | | |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  31329063 cactactaacgtgtttgttctattttacgtgggacctccacactctattttttcaattcacacaacactagatcaaagtttaataacttggtgtttaatc 31329162  T
Q  232 ttccaaccttccaatt 247  Q
    ||||||||||||||||    
T  31329163 ttccaaccttccaatt 31329178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 132 - 247
Target Start/End: Original strand, 31335784 - 31335899
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||| | || | |||||||||| ||| |||  | | |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  31335784 cactactaacgtgtttgttctattttacgtgggacctccacactctattttttcaattcacacaacactagatcaaagtttaataacttggtgtttaatc 31335883  T
Q  232 ttccaaccttccaatt 247  Q
    ||||||||||||||||    
T  31335884 ttccaaccttccaatt 31335899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 132 - 247
Target Start/End: Complemental strand, 42925769 - 42925656
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||||  |||||||| ||| |||  | | |||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||    
T  42925769 cactactaatgtgtgtt--ctattttacgtgggacctccacactctattttttcaattcacacaacactagatcaaagtttaattacttggtgtttaatc 42925672  T
Q  232 ttccaaccttccaatt 247  Q
    ||||||||||||||||    
T  42925671 ttccaaccttccaatt 42925656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 150 - 247
Target Start/End: Original strand, 28604105 - 28604201
Alignment:
Q  150 tctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatcttccaaccttccaatt 247  Q
    ||||||||||||| |||  || ||||||||||||||||||||||||||||||||||||| ||| || |||||||||| ||||||||||||||||||||    
T  28604105 tctattttatgtgggaccgca-tactctattttttcaattcacacaacactagatcaaaatttaattacttggtgtttaatcttccaaccttccaatt 28604201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 132 - 237
Target Start/End: Original strand, 18345417 - 18345522
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||| |||||||||||||| ||| || | |||||||||||| ||||||||||||| ||||||||||| | || |||||||||| ||||    
T  18345417 cactactaatgtgtgtgttctattttatgtgggacccccacactctatttttttaattcacacaacattagatcaaagtataattacttggtgtttaatc 18345516  T
Q  232 ttccaa 237  Q
    ||||||    
T  18345517 ttccaa 18345522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 132 - 237
Target Start/End: Original strand, 12797930 - 12798036
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgac-tccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaat 230  Q
    ||||||||||| |||| |||||||||||||| ||| ||| | |||||||||||||||||||||||||| ||||||||||| | || | |||||||| |||    
T  12797930 cactactaatgtgtgtgttctattttatgtgggacctcccacactctattttttcaattcacacaacattagatcaaagtataattatttggtgtttaat 12798029  T
Q  231 cttccaa 237  Q
    |||||||    
T  12798030 cttccaa 12798036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 132 - 233
Target Start/End: Original strand, 30651915 - 30652016
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||| |||||||||||| | ||| || | |||||||||||||||||||||||||| ||||||||||| | || |||||||||| ||||    
T  30651915 cactactaatgtgtgtgttctattttatgcgggacccccacactctattttttcaattcacacaacattagatcaaagtataattacttggtgtttaatc 30652014  T
Q  232 tt 233  Q
    ||    
T  30652015 tt 30652016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 237
Target Start/End: Complemental strand, 9179823 - 9179716
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctatttttt--caattcacacaacactagatcaaagtttcataacttggtgttcaa 229  Q
    ||||||||||| |||| |||||||||||||| ||| || | ||||||||||||  |||||||||||||| ||||||||||| | || |||||||||| ||    
T  9179823 cactactaatgtgtgtgttctattttatgtgggacccccacactctattttttttcaattcacacaacattagatcaaagtataattacttggtgtttaa 9179724  T
Q  230 tcttccaa 237  Q
    ||||||||    
T  9179723 tcttccaa 9179716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 237
Target Start/End: Complemental strand, 9184514 - 9184407
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctatttttt--caattcacacaacactagatcaaagtttcataacttggtgttcaa 229  Q
    ||||||||||| |||| |||||||||||||| ||| || | ||||||||||||  |||||||||||||| ||||||||||||| || | |||||||| ||    
T  9184514 cactactaatgtgtgtgttctattttatgtgggacccccacactctattttttttcaattcacacaacattagatcaaagtttaattatttggtgtttaa 9184415  T
Q  230 tcttccaa 237  Q
    ||||||||    
T  9184414 tcttccaa 9184407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 133 - 237
Target Start/End: Complemental strand, 20101744 - 20101640
Alignment:
Q  133 actactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatct 232  Q
    |||||||||| || | ||||||||||||||  || || | |||||||||||||||||||||||||| ||||||||||| | || |||||||||| |||||    
T  20101744 actactaatgtgtatgttctattttatgtggaaccccgacactctattttttcaattcacacaacattagatcaaagtataattacttggtgtttaatct 20101645  T
Q  233 tccaa 237  Q
    |||||    
T  20101644 tccaa 20101640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 237
Target Start/End: Complemental strand, 17974445 - 17974341
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||| |||||||||||||| ||| |||  |||||||||||||||||||||||||| ||||||||||| | || | ||| |||| ||||    
T  17974445 cactactaatgtgtgtgttctattttatgtgggacaccac-actctattttttcaattcacacaacattagatcaaagtataattatttgatgtttaatc 17974347  T
Q  232 ttccaa 237  Q
    ||||||    
T  17974346 ttccaa 17974341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 237
Target Start/End: Complemental strand, 25496479 - 25496374
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||| |||||||||||||| |||  | | |||||||||||||||||||||||| | ||||||||||| | || | |||||||| ||||    
T  25496479 cactactaatgtgtgtgttctattttatgtgggacctccacactctattttttcaattcacacaatattagatcaaagtataattatttggtgtttaatc 25496380  T
Q  232 ttccaa 237  Q
    ||||||    
T  25496379 ttccaa 25496374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 132 - 237
Target Start/End: Complemental strand, 17968058 - 17967954
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||  |||| |||||||||||||| ||| |||  |||||||||||| ||||||||||||| ||||||||||| | || ||||| |||| ||||    
T  17968058 cactactaatatgtgtgttctattttatgtgggaccccac-actctatttttttaattcacacaacattagatcaaagtataattacttgatgtttaatc 17967960  T
Q  232 ttccaa 237  Q
    ||||||    
T  17967959 ttccaa 17967954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 144 - 237
Target Start/End: Complemental strand, 19891590 - 19891497
Alignment:
Q  144 gtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatcttccaa 237  Q
    |||| |||||||||||||| |||||| | | |||||||||||||||||||||| | ||||||||||| | || || ||||||| ||||||||||    
T  19891590 gtgtgttctattttatgtgggactcccacattctattttttcaattcacacaagattagatcaaagtataattacatggtgtttaatcttccaa 19891497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 29678679 - 29678755
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaa 208  Q
    ||||||||||| |||| |||||||||||||| ||  || | |||||||||||||||||||||||||| |||||||||    
T  29678679 cactactaatgtgtgtgttctattttatgtgggatccctacactctattttttcaattcacacaacattagatcaaa 29678755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 233
Target Start/End: Complemental strand, 1934093 - 1934003
Alignment:
Q  143 agtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatctt 233  Q
    ||||| |||||||||||||| |||  |   |||||||||||||||||||||||||| ||||||||||| | || |||||||||| ||||||    
T  1934093 agtgtgttctattttatgtgggacctccccactctattttttcaattcacacaacattagatcaaagtataattacttggtgtttaatctt 1934003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 144 - 247
Target Start/End: Original strand, 32080390 - 32080494
Alignment:
Q  144 gtgttttctattttatgtgcgac-tccaatactctatttt-ttcaattcacacaacactagatcaaagtttcataacttggtgttcaatcttccaacctt 241  Q
    |||| |||||||||||||| ||| ||||| |||||||||| |||||||||||||| | | | ||||||| |||| ||||||||||  |||||||||||||    
T  32080390 gtgtgttctattttatgtgggacctccaa-actctatttttttcaattcacacaatattggttcaaagtctcatgacttggtgtttgatcttccaacctt 32080488  T
Q  242 ccaatt 247  Q
    ||||||    
T  32080489 ccaatt 32080494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 12361289 - 12361351
Alignment:
Q  175 tctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatcttccaa 237  Q
    |||||||||||||||||||||||| ||||||||||| | || | |||||||| ||||||||||    
T  12361289 tctattttttcaattcacacaacattagatcaaagtataattatttggtgtttaatcttccaa 12361351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 227
Target Start/End: Complemental strand, 44630540 - 44630447
Alignment:
Q  135 tactaatgagtgttttctattttatgtgcga-ctccaa-tactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttc 227  Q
    |||||||| |||| |||||||||||||| || |||||| | || | |||||||||||||||||||||||||||||| ||| |||| |||||||||    
T  44630540 tactaatgtgtgtgttctattttatgtgggacctccaagttctat-ttttttcaattcacacaacactagatcaaaatttaataaattggtgttc 44630447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 243
Target Start/End: Complemental strand, 15446377 - 15446267
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    |||||||||||  ||| |||||||||||||| ||| |||| |||||||||||||||||||||  ||||||  ||||||| | || |||| ||| | |||     
T  15446377 cactactaatgtatgtgttctattttatgtgggac-ccaacactctattttttcaattcacattacactacctcaaagtcttattactttgtgcttaatt 15446279  T
Q  232 ttccaaccttcc 243  Q
    || |||||||||    
T  15446278 tttcaaccttcc 15446267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 198
Target Start/End: Complemental strand, 24537118 - 24537052
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaaca 198  Q
    |||||||||||  ||| || ||||||||||| ||| || | ||||||||||||||||||||||||||    
T  24537118 cactactaatgtatgtgttatattttatgtgggacccccacactctattttttcaattcacacaaca 24537052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 19896951 - 19897025
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaa 208  Q
    ||||||||||| |||||  |||||||||||| ||| || |  ||||||||||||||||||||||||| || ||||||    
T  19896951 cactactaatgtgtgtt--ctattttatgtgggacccccacgctctattttttcaattcacacaacattatatcaaa 19897025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 237
Target Start/End: Complemental strand, 25477384 - 25477279
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||| |||||||||||||  |||  | | |||||||||||| ||||| ||||||| || |||||||| | || | ||| |||| ||||    
T  25477384 cactactaatgtgtgtgttctattttatgtaagaccaccacactctatttttttaattcgcacaacattaaatcaaagtataattatttgatgtttaatc 25477285  T
Q  232 ttccaa 237  Q
    ||||||    
T  25477284 ttccaa 25477279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 44630657 - 44630608
Alignment:
Q  18 tatcacaacaaatgtaacctaaaattatgggaactgatatccatgaataa 67  Q
    ||||||||||||  ||||||||||||||| ||| ||||||||||||||||    
T  44630657 tatcacaacaaacataacctaaaattatgagaagtgatatccatgaataa 44630608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 67
Target Start/End: Original strand, 28603987 - 28604022
Alignment:
Q  32 taacctaaaattatgggaactgatatccatgaataa 67  Q
    ||||||||||||||||||| ||||||||||||||||    
T  28603987 taacctaaaattatgggaagtgatatccatgaataa 28604022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 67
Target Start/End: Complemental strand, 42925869 - 42925834
Alignment:
Q  32 taacctaaaattatgggaactgatatccatgaataa 67  Q
    ||||||||||||||||||| ||||||||||||||||    
T  42925869 taacctaaaattatgggaagtgatatccatgaataa 42925834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 31328949 - 31328998
Alignment:
Q  18 tatcacaacaaatgtaacctaaaattatgggaactgatatccatgaataa 67  Q
    ||||||||||||  |||||||||||| || ||| ||||||||||||||||    
T  31328949 tatcacaacaaacataacctaaaattgtgagaagtgatatccatgaataa 31328998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 31335670 - 31335719
Alignment:
Q  18 tatcacaacaaatgtaacctaaaattatgggaactgatatccatgaataa 67  Q
    ||||||||||||  |||||||||||| || ||| ||||||||||||||||    
T  31335670 tatcacaacaaacataacctaaaattgtgagaagtgatatccatgaataa 31335719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 133 - 247
Target Start/End: Complemental strand, 64988 - 64875
Alignment:
Q  133 actactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatct 232  Q
    |||||||||| |||| |||||||||||||| ||| || | |||||||||||| ||||||||||||||||||||||||||| || |||| ||||| |||||    
T  64988 actactaatgtgtgtgttctattttatgtgggacccctacactctatttttttaattcacacaacactagatcaaagtttaattactt-gtgtttaatct 64890  T
Q  233 tccaaccttccaatt 247  Q
    |||||||||||||||    
T  64889 tccaaccttccaatt 64875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 7e-27; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 132 - 237
Target Start/End: Complemental strand, 757459 - 757354
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||| |||||||||||||| ||| || | |||||||||||||||||||||||||| ||||||||||| | || |||||||||| ||||    
T  757459 cactactaatgtgtgtgttctattttatgtgagacccccacactctattttttcaattcacacaacattagatcaaagtataattacttggtgtttaatc 757360  T
Q  232 ttccaa 237  Q
    ||||||    
T  757359 ttccaa 757354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 132 - 237
Target Start/End: Original strand, 20520962 - 20521067
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||| |||||||||||||| ||| || | |||||||||||||||||||||||||| ||||||||||| | || |||||||||| ||||    
T  20520962 cactactaatgtgtgtattctattttatgtgggacccccacactctattttttcaattcacacaacattagatcaaagtataattacttggtgtttaatc 20521061  T
Q  232 ttccaa 237  Q
    ||||||    
T  20521062 ttccaa 20521067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 132 - 244
Target Start/End: Complemental strand, 3656352 - 3656240
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    |||||||||||   || |||||||||||||| ||| || | | ||||||||||||||||||||||||||| |||||||||| || |||||||||| ||||    
T  3656352 cactactaatgtccgtgttctattttatgtgggacccctacattctattttttcaattcacacaacactaaatcaaagtttaattacttggtgtttaatc 3656253  T
Q  232 ttccaaccttcca 244  Q
    |||||||||||||    
T  3656252 ttccaaccttcca 3656240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 132 - 237
Target Start/End: Original strand, 18473007 - 18473112
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||| |||||||||||||| ||| || | |||||||||||||||||||||||||| ||||||||||| | || |||| ||||| ||||    
T  18473007 cactactaatgtgtgtgttctattttatgtgggacccccacactctattttttcaattcacacaacattagatcaaagtataattactttgtgtttaatc 18473106  T
Q  232 ttccaa 237  Q
    ||||||    
T  18473107 ttccaa 18473112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 179 - 247
Target Start/End: Original strand, 29351276 - 29351344
Alignment:
Q  179 ttttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatcttccaaccttccaatt 247  Q
    |||||||||||||||||||||| ||||||||||| |||| |||||||| ||||||||||||||||||||    
T  29351276 ttttttcaattcacacaacactggatcaaagtttaataaattggtgtttaatcttccaaccttccaatt 29351344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 233
Target Start/End: Complemental strand, 7570310 - 7570209
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||  |||| |||||||||||| | ||| || | |||||||||||||||||||||||||| ||||||||||| | || |||||||||| ||||    
T  7570310 cactactaatatgtgtgttctattttatgcgggacccccacactctattttttcaattcacacaacattagatcaaagtataattacttggtgtttaatc 7570211  T
Q  232 tt 233  Q
    ||    
T  7570210 tt 7570209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 237
Target Start/End: Original strand, 55326778 - 55326882
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||| |||||||||||||| ||| || | ||| |||||||||||||||||||||| ||||||||| | | || |||||||||| ||||    
T  55326778 cactactaatgtgtgtgttctattttatgtgggacccccacactatattttttcaattcacacaacattagatcaaa-tataattacttggtgtttaatc 55326876  T
Q  232 ttccaa 237  Q
    ||||||    
T  55326877 ttccaa 55326882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 132 - 237
Target Start/End: Complemental strand, 14437785 - 14437683
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||| |||||||||||||| |||  | | |||||||||||||||||||||||||   |||||||||| | || |||||||||| ||||    
T  14437785 cactactaatgtgtgtgttctattttatgtgagacctccacactctattttttcaattcacacaac---agatcaaagtataattacttggtgtttaatc 14437689  T
Q  232 ttccaa 237  Q
    ||||||    
T  14437688 ttccaa 14437683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 132 - 233
Target Start/End: Complemental strand, 23660584 - 23660483
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcga-ctccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaat 230  Q
    ||||||||||| |||| || ||||||||||| || |||||  |||||||||||||||||||||||||| ||||||||||| | || |||||||||| |||    
T  23660584 cactactaatgtgtgtgttttattttatgtgggagctccac-actctattttttcaattcacacaacattagatcaaagtataattacttggtgtttaat 23660486  T
Q  231 ctt 233  Q
    |||    
T  23660485 ctt 23660483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 132 - 233
Target Start/End: Complemental strand, 23665216 - 23665115
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcga-ctccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaat 230  Q
    ||||||||||| |||| ||||||||||| || || |||||  |||||||||||||||||||||||||| ||||||||||| | || |||||||||| |||    
T  23665216 cactactaatgtgtgtgttctattttatatgggagctccac-actctattttttcaattcacacaacattagatcaaagtataattacttggtgtttaat 23665118  T
Q  231 ctt 233  Q
    |||    
T  23665117 ctt 23665115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 177 - 247
Target Start/End: Original strand, 38891162 - 38891232
Alignment:
Q  177 tattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatcttccaaccttccaatt 247  Q
    ||||||||||||||||| |||| ||||||||||||| || ||| |||||| ||||||||||||||||||||    
T  38891162 tattttttcaattcacaaaacattagatcaaagtttaattactcggtgtttaatcttccaaccttccaatt 38891232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 46965054 - 46965118
Alignment:
Q  173 actctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatcttccaa 237  Q
    |||||||||||||||||||||||||| ||||||||||| | || | |||||||| ||||||||||    
T  46965054 actctattttttcaattcacacaacattagatcaaagtataattatttggtgtttaatcttccaa 46965118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 247
Target Start/End: Complemental strand, 2206909 - 2206812
Alignment:
Q  149 ttctattttatgtgcgactccaatactctatttttt-caattcacacaacactagatcaaagtttcataacttggtgttcaatcttccaaccttccaatt 247  Q
    |||||||||||||| | | || | |||||||||||| ||||| ||||||||||| |||||| ||| ||||||||||||| || |||||||||||||||||    
T  2206909 ttctattttatgtgggtcccccacactctatttttttcaatttacacaacacta-atcaaaatttaataacttggtgtttaa-cttccaaccttccaatt 2206812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 237
Target Start/End: Original strand, 18468213 - 18468318
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctatttt-ttcaattcacacaacactagatcaaagtttcataacttggtgttcaat 230  Q
    ||||||||||| |||| |||||| ||||||  ||| || | |||||||||| |||||||||||||||| ||||||||| | | || |||||||||| |||    
T  18468213 cactactaatgtgtgtgttctatattatgta-gacccccacactctatttttttcaattcacacaacattagatcaaactataattacttggtgtttaat 18468311  T
Q  231 cttccaa 237  Q
    |||||||    
T  18468312 cttccaa 18468318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 233
Target Start/End: Original strand, 20175404 - 20175492
Alignment:
Q  144 gtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatctt 233  Q
    |||| ||||||||||||||  || |||  ||||||||||||||||| |||||||| ||||||||||| | || |||||||||| ||||||    
T  20175404 gtgtgttctattttatgtggaaccccac-actctattttttcaattaacacaacattagatcaaagtataattacttggtgtttaatctt 20175492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 235
Target Start/End: Complemental strand, 12970903 - 12970800
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||| | |||| |||||||||||||| ||   | | ||| |||||||||||||||||||||| || ||||| || | || |||||||||| ||||    
T  12970903 cactactaaagtgtgtgttctattttatgtgggatcaccacactttattttttcaattcacacaacattaaatcaacgtataattacttggtgtttaatc 12970804  T
Q  232 ttcc 235  Q
    ||||    
T  12970803 ttcc 12970800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 238
Target Start/End: Original strand, 55432228 - 55432331
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||||  ||||||| |||| ||| || | ||| ||||||||||||||||||| || ||||||||| | | || |||||||||| ||||    
T  55432228 cactactaatgtgtgtt--ctattttgtgtgggacccccacactttattttttcaattcacacagcattagatcaaa-tataattacttggtgtttaatc 55432324  T
Q  232 ttccaac 238  Q
    |||||||    
T  55432325 ttccaac 55432331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 237
Target Start/End: Original strand, 27709947 - 27710034
Alignment:
Q  149 ttctattttatgtgcgactccaatactctattttttcaattcacacaacact-agatcaaagtttcataacttggtgttcaatcttccaa 237  Q
    |||||||||||||| ||| |||  |||||||||||||||||||||||||| | | |||||||| | || |||||||||| ||||||||||    
T  27709947 ttctattttatgtgggaccccac-actctattttttcaattcacacaacattaaaatcaaagtataat-acttggtgtttaatcttccaa 27710034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 173 - 226
Target Start/End: Complemental strand, 37834124 - 37834071
Alignment:
Q  173 actctattttttcaattcacacaacactagatcaaagtttcataacttggtgtt 226  Q
    |||||||||||||||||||||| ||||||  ||||||| |||||||||| ||||    
T  37834124 actctattttttcaattcacaccacactaactcaaagtctcataacttgatgtt 37834071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 237
Target Start/End: Complemental strand, 32473185 - 32473134
Alignment:
Q  186 aattcacacaacactagatcaaagtttcataacttggtgttcaatcttccaa 237  Q
    ||||||||||||| ||||||||||| | || |||||||||| ||||||||||    
T  32473185 aattcacacaacattagatcaaagtataattacttggtgtttaatcttccaa 32473134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 67
Target Start/End: Complemental strand, 2207020 - 2206986
Alignment:
Q  33 aacctaaaattatgggaactgatatccatgaataa 67  Q
    |||||||||||||||||| ||||||||||||||||    
T  2207020 aacctaaaattatgggaagtgatatccatgaataa 2206986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 210
Target Start/End: Original strand, 7860709 - 7860787
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagt 210  Q
    ||||| ||||| |||| |||||||||||||| |||  | | ||||||||||||||||||   ||| |||||||||||||    
T  7860709 cactattaatgtgtgtgttctattttatgtgggacctccacactctattttttcaattcgtccaaaactagatcaaagt 7860787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 3656469 - 3656420
Alignment:
Q  18 tatcacaacaaatgtaacctaaaattatgggaactgatatccatgaataa 67  Q
    ||||||||||||  |||| |||||||||| ||| ||||||||||||||||    
T  3656469 tatcacaacaaacataacataaaattatgagaagtgatatccatgaataa 3656420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 29351114 - 29351163
Alignment:
Q  18 tatcacaacaaatgtaacctaaaattatgggaactgatatccatgaataa 67  Q
    ||||||||||||  ||| ||||||||||| ||| ||||||||||||||||    
T  29351114 tatcacaacaaacataatctaaaattatgagaagtgatatccatgaataa 29351163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 132 - 247
Target Start/End: Original strand, 26442 - 26557
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||| |||||||||||||| |||  |   ||||||||||||||||||||||||| |||||| ||||||| || | |||||||| ||||    
T  26442 cactactaatgtgtgtgttctattttatgtgggacctccgcactctattttttcaattcacacaactctagatgaaagtttaattatttggtgtttaatc 26541  T
Q  232 ttccaaccttccaatt 247  Q
    ||||||||||||||||    
T  26542 ttccaaccttccaatt 26557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 132 - 237
Target Start/End: Original strand, 30178 - 30283
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||| |||||||||||||| ||  || | |||||||||||||||||||||||||| ||||||||| | | || |||||||||| ||||    
T  30178 cactactaatgtgtgtgttctattttatgtgggatccctacactctattttttcaattcacacaacattagatcaaaatataattacttggtgtttaatc 30277  T
Q  232 ttccaa 237  Q
    ||||||    
T  30278 ttccaa 30283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 26328 - 26377
Alignment:
Q  18 tatcacaacaaatgtaacctaaaattatgggaactgatatccatgaataa 67  Q
    ||||||||||||  |||||||||||||||| || ||||||||||||||||    
T  26328 tatcacaacaaacataacctaaaattatggaaagtgatatccatgaataa 26377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 132 - 247
Target Start/End: Complemental strand, 26286253 - 26286136
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatac--tctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaa 229  Q
    ||||||||||| |||| |||||||||||||| ||| || | ||  | | ||||||||||| | |||||||||||||||||||| || |||||||||| ||    
T  26286253 cactactaatgtgtgtgttctattttatgtgggacccccacactattttttttttcaatttatacaacactagatcaaagtttaattacttggtgtttaa 26286154  T
Q  230 tcttccaaccttccaatt 247  Q
    ||||||||||||||||||    
T  26286153 tcttccaaccttccaatt 26286136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 133 - 226
Target Start/End: Original strand, 15973725 - 15973818
Alignment:
Q  133 actactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgtt 226  Q
    |||||||||| |||| ||||||||||||||||||  | | ||| ||||||||| |||||||||||||||| |||||||||||| ||||||||||    
T  15973725 actactaatgtgtgtgttctattttatgtgcgacctccacactttattttttcgattcacacaacactagctcaaagtttcatgacttggtgtt 15973818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 132 - 237
Target Start/End: Complemental strand, 42625673 - 42625568
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||  |||||||||||||| ||| || | ||||||||||||||||||||| |||| ||||||||||| | || |||||||||| ||||    
T  42625673 cactactaatgtgtgagttctattttatgtgggacccccacactctattttttcaattcacataacattagatcaaagtataattacttggtgtttaatc 42625574  T
Q  232 ttccaa 237  Q
    ||||||    
T  42625573 ttccaa 42625568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 244
Target Start/End: Complemental strand, 13313409 - 13313297
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||| |||||||||||||| |||  | | |||||||||||||||||||||||| |||| ||||||||||  ||||||  |||| ||||    
T  13313409 cactactaatgtgtgtgttctattttatgtgggacatccacactctattttttcaattcacacaatactaaatcaaagtttagtaacttaatgtttaatc 13313310  T
Q  232 ttccaaccttcca 244  Q
    ||| |||||||||    
T  13313309 ttcaaaccttcca 13313297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 132 - 247
Target Start/End: Original strand, 30259263 - 30259378
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    |||||||||||  |||  |||||||||||||   |||| | ||||||||||||||||| ||| |||||||||||||||||| || ||||||| || ||||    
T  30259263 cactactaatgtatgtgatctattttatgtggatctcccacactctattttttcaatttacaaaacactagatcaaagtttaattacttggtatttaatc 30259362  T
Q  232 ttccaaccttccaatt 247  Q
    |||||||||| |||||    
T  30259363 ttccaacctttcaatt 30259378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 233
Target Start/End: Original strand, 4931224 - 4931325
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||| |||||||||||| | ||| || | |||||||||||||||||||||||||| || |||||||| | || |||||||||| ||||    
T  4931224 cactactaatgtgtgtgttctattttatgcgggacccccacactctattttttcaattcacacaacattatatcaaagtataattacttggtgtttaatc 4931323  T
Q  232 tt 233  Q
    ||    
T  4931324 tt 4931325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 135 - 237
Target Start/End: Original strand, 2595774 - 2595876
Alignment:
Q  135 tactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatcttc 234  Q
    |||||||| |||| |||||||||||||| ||  || | |||||||||||||||||||||||||| ||||| ||||| | || | |||||||| |||||||    
T  2595774 tactaatgtgtgtgttctattttatgtgggatacccacactctattttttcaattcacacaacattagattaaagtgtaattatttggtgtttaatcttc 2595873  T
Q  235 caa 237  Q
    |||    
T  2595874 caa 2595876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 132 - 212
Target Start/End: Original strand, 4580466 - 4580546
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagttt 212  Q
    ||||||||||| |||| ||||||||||| || ||| || | |||||||||||| |||||||||||||||| ||||||||||    
T  4580466 cactactaatgtgtgtgttctattttatatgggacccctacactctatttttttaattcacacaacactaaatcaaagttt 4580546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 149 - 237
Target Start/End: Original strand, 12802301 - 12802388
Alignment:
Q  149 ttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatcttccaa 237  Q
    |||||||||||||| ||| |||  |||||||||||||||||||||||||| ||||| ||||| | || |||||||||| ||||||||||    
T  12802301 ttctattttatgtgggaccccac-actctattttttcaattcacacaacattagattaaagtataattacttggtgtttaatcttccaa 12802388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 132 - 237
Target Start/End: Original strand, 3880969 - 3881077
Alignment:
Q  132 cactactaatga---gtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttca 228  Q
    ||||||||||||   |||| |||||||||||||| ||| || | |||||||||||||||||||| ||| | ||||||||||| | || ||||||| || |    
T  3880969 cactactaatgatgtgtgtgttctattttatgtgagacccccacactctattttttcaattcacgcaatattagatcaaagtataattacttggtattta 3881068  T
Q  229 atcttccaa 237  Q
    |||||||||    
T  3881069 atcttccaa 3881077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 132 - 237
Target Start/End: Original strand, 12257023 - 12257127
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||| |||||||||||||| ||| |||  ||||||||||||||||| |||||||| || |||||||| | || | |||||| | ||||    
T  12257023 cactactaatgcgtgtgttctattttatgtgggaccccac-actctattttttcaatttacacaacattaaatcaaagtataattatttggtgattaatc 12257121  T
Q  232 ttccaa 237  Q
    ||||||    
T  12257122 ttccaa 12257127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 132 - 237
Target Start/End: Complemental strand, 44508391 - 44508286
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||  |||| ||||||||||| || || ||| | |||||||||||||||||||||||| | ||||||||||| | || ||||| | || ||||    
T  44508391 cactactaatatgtgtgttctattttatatgggattcccacactctattttttcaattcacacaatattagatcaaagtataattacttgatatttaatc 44508292  T
Q  232 ttccaa 237  Q
    ||||||    
T  44508291 ttccaa 44508286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 232
Target Start/End: Complemental strand, 23247653 - 23247554
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    |||||||||||  |||||||||||||| ||| ||| |  | ||||||||||||||||||||| |||| ||||||||||| | || |||||||||| ||||    
T  23247653 cactactaatgtttgttttctattttaggtgggac-catacactctattttttcaattcacataacattagatcaaagtataattacttggtgtttaatc 23247555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 233
Target Start/End: Complemental strand, 10392135 - 10392081
Alignment:
Q  179 ttttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatctt 233  Q
    |||||||||||||||||||||||||||||||| | || |||||||||| ||||||    
T  10392135 ttttttcaattcacacaacactagatcaaagtataattacttggtgtttaatctt 10392081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 237
Target Start/End: Original strand, 21672209 - 21672310
Alignment:
Q  135 tactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatcttc 234  Q
    |||||||| ||||  ||||||||||||| || ||| | | |||||||||||||||||||||||  ||||||||||| | || |||||||||| | |||||    
T  21672209 tactaatgtgtgtgctctattttatgtggga-tcccacattctattttttcaattcacacaacgttagatcaaagtataattacttggtgtttattcttc 21672307  T
Q  235 caa 237  Q
    |||    
T  21672308 caa 21672310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 23151769 - 23151703
Alignment:
Q  144 gtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagt 210  Q
    |||| |||||||||||| | |||||| | ||| |||||||||||||||||||||| |||||||||||    
T  23151769 gtgtgttctattttatgcgggactcccacactttattttttcaattcacacaacattagatcaaagt 23151703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 233
Target Start/End: Original strand, 3046575 - 3046675
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||| |||||||||||||| ||| |||  |||  ||||||||||||||||||||  || |||||| | | || |||||||||| ||||    
T  3046575 cactactaatgtgtgtgttctattttatgtgggaccccac-acttaattttttcaattcacacaactttatatcaaattataattacttggtgtttaatc 3046673  T
Q  232 tt 233  Q
    ||    
T  3046674 tt 3046675  T

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Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 30258968 - 30259017
Alignment:
Q  18 tatcacaacaaatgtaacctaaaattatgggaactgatatccatgaataa 67  Q
    ||||||||||||  ||| ||||||||||||||| ||||||||||||||||    
T  30258968 tatcacaacaaacataatctaaaattatgggaagtgatatccatgaataa 30259017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 6590221 - 6590172
Alignment:
Q  18 tatcacaacaaatgtaacctaaaattatgggaactgatatccatgaataa 67  Q
    ||||||||||||| ||| ||||| ||||||||| ||||||||| ||||||    
T  6590221 tatcacaacaaatataaactaaatttatgggaaatgatatccacgaataa 6590172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 10387391 - 10387347
Alignment:
Q  182 tttcaattcacacaacactagatcaaagtttcataacttggtgtt 226  Q
    |||| |||||||||||||||||||||||| | || ||||||||||    
T  10387391 tttctattcacacaacactagatcaaagtataattacttggtgtt 10387347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 132 - 237
Target Start/End: Original strand, 8110 - 8215
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||| |||||| ||||||| ||| || | |||||||||||||||||||||||||| || |||||||| | || |||||||||| ||||    
T  8110 cactactaatgtgtgtgttctatcttatgtgggacccccacactctattttttcaattcacacaacattaaatcaaagtataattacttggtgtttaatc 8209  T
Q  232 ttccaa 237  Q
    ||||||    
T  8210 ttccaa 8215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 233
Target Start/End: Original strand, 5065 - 5166
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| | || |||||||||||| | ||| || | |||||||||||||||||||||||||| ||||||||||| |  |||||||||||| ||||    
T  5065 cactactaatgtgagtgttctattttatgcgggacccccacactctattttttcaattcacacaacattagatcaaagtatattaacttggtgtttaatc 5164  T
Q  232 tt 233  Q
    ||    
T  5165 tt 5166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 210
Target Start/End: Complemental strand, 443030 - 442957
Alignment:
Q  136 actaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagt 210  Q
    ||||||| |||| |||||||||||||| ||| |||  |||||||||||||||||||||||||| |||||||||||    
T  443030 actaatgtgtgtgttctattttatgtgggaccccac-actctattttttcaattcacacaacattagatcaaagt 442957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 233
Target Start/End: Original strand, 7002646 - 7002747
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    |||||||||||  ||| |||||||||||||| ||  || | |||||||||||||||||||||||| ||||||||||||| | || |||||||||| ||||    
T  7002646 cactactaatgtatgtattctattttatgtgagatccccacactctattttttcaattcacacaatactagatcaaagtctaattacttggtgtttaatc 7002745  T
Q  232 tt 233  Q
    ||    
T  7002746 tt 7002747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 237
Target Start/End: Complemental strand, 38181377 - 38181272
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||| |||||||||||||| |||||  | ||| |||||||||||||||||||||| ||||||||||| | || ||||| |||| |||     
T  38181377 cactactaatgtgtgtgttctattttatgtgggactctcacactttattttttcaattcacacaacattagatcaaagtataattacttgatgtttaatg 38181278  T
Q  232 ttccaa 237  Q
    ||||||    
T  38181277 ttccaa 38181272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 233
Target Start/End: Complemental strand, 40124989 - 40124888
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||| |||||||||||| | ||| || | |||||||||||||||||||||||||| ||||||||||| |  | |||||||||| ||||    
T  40124989 cactactaatgtgtgtgttctattttatgcgggacccccacactctattttttcaattcacacaacattagatcaaagtatatttacttggtgtttaatc 40124890  T
Q  232 tt 233  Q
    ||    
T  40124889 tt 40124888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 132 - 210
Target Start/End: Original strand, 17021257 - 17021334
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagt 210  Q
    ||||||||||| |||| |||||||||||||| ||| |||  |||||||||||||||||||||||||| |||||||||||    
T  17021257 cactactaatgtgtgtgttctattttatgtgggaccccac-actctattttttcaattcacacaacattagatcaaagt 17021334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 132 - 210
Target Start/End: Original strand, 17551694 - 17551771
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagt 210  Q
    ||||||||||| |||| |||||||||||||| ||| |||  |||||||||||||||||||||||||| |||||||||||    
T  17551694 cactactaatgtgtgtgttctattttatgtgggaccccac-actctattttttcaattcacacaacattagatcaaagt 17551771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 132 - 237
Target Start/End: Original strand, 1808452 - 1808556
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    |||| |||||| |||| ||||||||||| || ||| |||  ||| |||||||||||||||||||||| ||||||||||| | || |||||||||| ||||    
T  1808452 cacttctaatgtgtgtgttctattttatatgggaccccac-actatattttttcaattcacacaacattagatcaaagtataattacttggtgtttaatc 1808550  T
Q  232 ttccaa 237  Q
    ||||||    
T  1808551 ttccaa 1808556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 132 - 237
Target Start/End: Complemental strand, 1910042 - 1909937
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||   ||||||| ||||| |||  | | |||||||||||||||||||||||||| ||||||||||| | || |||||||||| ||||    
T  1910042 cactactaatgtgtgagctctatttcatgtgggacatccacactctattttttcaattcacacaacattagatcaaagtataattacttggtgtttaatc 1909943  T
Q  232 ttccaa 237  Q
    ||||||    
T  1909942 ttccaa 1909937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 132 - 210
Target Start/End: Complemental strand, 44925016 - 44924938
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgac-tccaatactctattttttcaattcacacaacactagatcaaagt 210  Q
    ||||||||||| ||||||||||||||||||| ||| ||||| |||||| ||||||||||||||||| | |||||||||||    
T  44925016 cactactaatgtgtgttttctattttatgtgggacctccaa-actctaatttttcaattcacacaagattagatcaaagt 44924938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 212
Target Start/End: Complemental strand, 17953241 - 17953162
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagttt 212  Q
    ||||||| ||| |||| ||||||||| ||||  || |||  ||||||||||||||||||||||||||||||||||||||||    
T  17953241 cactactgatgtgtgtgttctattttttgtggtaccccac-actctattttttcaattcacacaacactagatcaaagttt 17953162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 210
Target Start/End: Complemental strand, 15950667 - 15950589
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagt 210  Q
    ||||| ||||| |||| ||||||||||||||  ||  | | |||||||||||||||||||||||||| |||||||||||    
T  15950667 cactattaatgtgtgtgttctattttatgtggcacctccacactctattttttcaattcacacaacattagatcaaagt 15950589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 237
Target Start/End: Complemental strand, 18875480 - 18875375
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||  |||| ||||||| |||||| ||| || | || ||||||||||||||||||||||| ||||||||| ||| || |||  || || ||||    
T  18875480 cactactaatatgtgtgttctattgtatgtgggacccctacacactattttttcaattcacacaacattagatcaaaatttaattactcagtatttaatc 18875381  T
Q  232 ttccaa 237  Q
    ||||||    
T  18875380 ttccaa 18875375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 196
Target Start/End: Original strand, 33417531 - 33417595
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaa 196  Q
    ||||||||||| |||| |||||||||||||| ||| |  | ||||||||||||||||||||||||    
T  33417531 cactactaatgtgtgtgttctattttatgtgagacccatacactctattttttcaattcacacaa 33417595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 237
Target Start/End: Complemental strand, 28559211 - 28559107
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||| |||||||||||||| |||  | | ||||||||||||| ||  |||||||| ||||| ||||| | || | |||||||| ||||    
T  28559211 cactactaatgtgtgtgttctattttatgtgggacctccacactctattttttccatgtacacaacattagattaaagtataat-atttggtgtttaatc 28559113  T
Q  232 ttccaa 237  Q
    ||||||    
T  28559112 ttccaa 28559107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 208
Target Start/End: Original strand, 17798093 - 17798124
Alignment:
Q  177 tattttttcaattcacacaacactagatcaaa 208  Q
    ||||||||||||||||||||||||||||||||    
T  17798093 tattttttcaattcacacaacactagatcaaa 17798124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 198
Target Start/End: Original strand, 26780105 - 26780170
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaaca 198  Q
    ||||||||||| |||| |||||||||||||| ||| || | ||||||  ||||||||||||||||||    
T  26780105 cactactaatgtgtgtgttctattttatgtgggacacccacactcta-gttttcaattcacacaaca 26780170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 237
Target Start/End: Original strand, 2966586 - 2966691
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||| ||||||||||| || ||| |  | |||||||||||||||||| || |||| ||||| ||| | | || | ||| |||| ||||    
T  2966586 cactactaatgtgtgtgttctattttatatgggaccctcacactctattttttcaattcccataacattagataaaaatataattatttgatgtttaatc 2966685  T
Q  232 ttccaa 237  Q
    ||||||    
T  2966686 ttccaa 2966691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 136 - 226
Target Start/End: Original strand, 6237 - 6327
Alignment:
Q  136 actaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgtt 226  Q
    ||||||| |||| |||||| ||||||| |||  ||| ||||||||||||||||||||| |||| |||||| |||| | || ||||||||||    
T  6237 actaatgtgtgtattctatcttatgtgggacctcaacactctattttttcaattcacataacattagatcgaagtataattacttggtgtt 6327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 233
Target Start/End: Original strand, 36123 - 36223
Alignment:
Q  132 cactactaatgagtgttttctattttatgtgcgactccaatactctattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatc 231  Q
    ||||||||||| |||  |||||||||||||| | | |||  ||||||||||||||||||| |||||| ||||||||| | | || | |||||||| ||||    
T  36123 cactactaatgcgtgagttctattttatgtggggccccac-actctattttttcaattcatacaacattagatcaaaatataattatttggtgtttaatc 36221  T
Q  232 tt 233  Q
    ||    
T  36222 tt 36223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 233
Target Start/End: Original strand, 5015 - 5071
Alignment:
Q  177 tattttttcaattcacacaacactagatcaaagtttcataacttggtgttcaatctt 233  Q
    |||||||||||||||||||||| ||||||||||| | || || ||||||| ||||||    
T  5015 tattttttcaattcacacaacattagatcaaagtataattacgtggtgtttaatctt 5071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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