View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2746_low_34 (Length: 250)
Name: NF2746_low_34
Description: NF2746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2746_low_34 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 39228095 - 39227852
Alignment:
| Q |
7 |
tccaagaatatgttcaatggaaatctaagttggaaattctctcatttgaaagagcttgaagttcttgatgcttacaataatgagttcaattgttcactcc |
106 |
Q |
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| T |
39228095 |
tccaacaacatgttcaatggaaatctaagttggaaattctctcatttgaaagagcttgaagttcttgatgcttacaataatgagttcaattgttcactcc |
39227996 |
T |
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| Q |
107 |
ctcttggtgtcactgagttacctaaactcaagtacttgaattttggaggaaattttttctatggagaaattccttcaaaatatggtaacatgttgcagct |
206 |
Q |
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| T |
39227995 |
ctcttggtgtcactgagttacctaaactcaagtacttgaattttggaggaaattttttctatggagaaattccttcaaaatatggtaacatgttgcagct |
39227896 |
T |
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| Q |
207 |
taactatttgtctcttgcaggtaatgatttgagaggtttcatac |
250 |
Q |
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| T |
39227895 |
taactatttgtctcttgcaggtaatgatttgagaggtttcatac |
39227852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 25547294 - 25547051
Alignment:
| Q |
7 |
tccaagaatatgttcaatggaaatctaagttggaaattctctcatttgaaagagcttgaagttcttgatgcttacaataatgagttcaattgttcactcc |
106 |
Q |
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| T |
25547294 |
tccaacaacatgttcaatggaaatctaagttggaaattctctcatttgaaagagcttgaagttcttgatgcttacaacaatgagttcaattgttcactac |
25547195 |
T |
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| Q |
107 |
ctcttggtgtcactgagttacctaaactcaagtacttgaattttggaggaaattttttctatggagaaattccttcaaaatatggtaacatgttgcagct |
206 |
Q |
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| T |
25547194 |
ctcttggtgtcactgagttacctaaactcaagtacttgaattttggaggaaattttttctatggagaaattccttcaaaatatggtaacatgttgcagct |
25547095 |
T |
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| Q |
207 |
taactatttgtctcttgcaggtaatgatttgagaggtttcatac |
250 |
Q |
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| T |
25547094 |
taactatttgtctcttgcaggtaatgatttgagaggtttcatac |
25547051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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