View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2746_low_36 (Length: 248)
Name: NF2746_low_36
Description: NF2746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2746_low_36 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 248
Target Start/End: Original strand, 39227634 - 39227865
Alignment:
| Q |
17 |
aattgaaccattaagttgattggtttgcaagaaaagtgtgtctagtttgtaaagttttcctagctcatgtggaattgaacctttcaaaccacagtttgca |
116 |
Q |
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| T |
39227634 |
aattgaaccattaagttgattggtttgcaagaaaagtgtgtctagtttgtaaagttttcctagctcatgtggaattgaacctttcaaaccacagtttgca |
39227733 |
T |
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| Q |
117 |
agatcaagatgaactaaattaacaaggttaccaaaatgaggtggaatttcaccatcaaactcattgtaataacctaacaaaaggtgtgtaagattagtaa |
216 |
Q |
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| T |
39227734 |
agatcaagatgaactaaattaacaaggttaccaaaatgaggtggaatttcaccatcaaactcattgtaataacctaacaaaaggtgtgtaagattagtaa |
39227833 |
T |
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| Q |
217 |
gatttccaagctcaaaaggtatgaaacctctc |
248 |
Q |
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| T |
39227834 |
gatttccaagctcaaaaggtatgaaacctctc |
39227865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 17 - 248
Target Start/End: Original strand, 25546833 - 25547064
Alignment:
| Q |
17 |
aattgaaccattaagttgattggtttgcaagaaaagtgtgtctagtttgtaaagttttcctagctcatgtggaattgaacctttcaaaccacagtttgca |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
25546833 |
aattgaaccattaagttgattggtttgcaagaaaagtgtgtctagtttgtaaagttttcgtagctcatgtggaattgaacctttcaaaccacagtttgca |
25546932 |
T |
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| Q |
117 |
agatcaagatgaactaaattaacaaggttaccaaaatgaggtggaatttcaccatcaaactcattgtaataacctaacaaaaggtgtgtaagattagtaa |
216 |
Q |
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| T |
25546933 |
agatcaagatgaagtaaattaacaaggttaccaaaatgaggtggaatttcaccatcaaactcattgtaataacctaacaaaaggtgtgtaagattagtaa |
25547032 |
T |
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| Q |
217 |
gatttccaagctcaaaaggtatgaaacctctc |
248 |
Q |
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| T |
25547033 |
gatttccaagctcaaaaggtatgaaacctctc |
25547064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 103
Target Start/End: Complemental strand, 16733563 - 16733490
Alignment:
| Q |
30 |
agttgattggtttgcaagaaaagtgtgtctagtttgtaaagttttcctagctcatgtggaattgaacctttcaa |
103 |
Q |
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| T |
16733563 |
agttgatttttttgcaagaaaagtgtatctagcttgttaagttgacctaactcaagtggaattgaacctttcaa |
16733490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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