View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2746_low_39 (Length: 245)

Name: NF2746_low_39
Description: NF2746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2746_low_39
NF2746_low_39
[»] chr5 (2 HSPs)
chr5 (13-245)||(20334010-20334244)
chr5 (13-245)||(17793414-17793648)
[»] chr4 (5 HSPs)
chr4 (13-245)||(25428542-25428776)
chr4 (13-245)||(1541292-1541526)
chr4 (72-230)||(16937850-16938007)
chr4 (72-243)||(15537490-15537660)
chr4 (111-172)||(56360994-56361055)
[»] chr1 (2 HSPs)
chr1 (13-245)||(49211101-49211335)
chr1 (13-245)||(26400925-26401159)
[»] chr6 (2 HSPs)
chr6 (13-245)||(7033994-7034228)
chr6 (72-243)||(26254043-26254213)
[»] chr8 (2 HSPs)
chr8 (72-245)||(18011216-18011388)
chr8 (72-243)||(43441676-43441846)
[»] chr7 (4 HSPs)
chr7 (72-243)||(8986010-8986180)
chr7 (72-243)||(35973027-35973197)
chr7 (72-243)||(35994439-35994609)
chr7 (72-243)||(43582891-43583061)
[»] scaffold0012 (1 HSPs)
scaffold0012 (100-192)||(154287-154379)


Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 245
Target Start/End: Original strand, 20334010 - 20334244
Alignment:
Q  13 attctagtgaaaactgtttctgaaacaccagcaaagagacatgattttgctttcacctt---agtttttctctcctttgtgatatttcaactgagccatg 109  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||   ||||||||||||||| |||||||||||||||||||||     
T  20334010 attctagtgaaaactgtttctaaaacaccagcaaagagacatgattttgctttcgccttcttagtttttctctcctt-gtgatatttcaactgagccata 20334108  T
Q  110 gttggattattcggcagtggaggaacttcataatcctcttctatggcttcccaaacatccaaagcttctaggtaagcctccattttgactgcccaaagtt 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  20334109 gttggattattcggcagtggaggaacttcataatcctcttctatggcttcccaaacatccaaagcttctaggtaagcctcaatttttactgcccaaagtt 20334208  T
Q  210 catagttgttcccatcaaagagaggaggggcaactt 245  Q
    ||||||||||||||||||||||||||||||||||||    
T  20334209 catagttgttcccatcaaagagaggaggggcaactt 20334244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 13 - 245
Target Start/End: Complemental strand, 17793648 - 17793414
Alignment:
Q  13 attctagtgaaaactgtttctgaaacaccagcaaagagacatgattttgctttcacctta---gtttttctctcctttgtgatatttcaactgagccatg 109  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||| ||  ||||    |||||| ||||||| |||| | ||||| ||||||||     
T  17793648 attctagtgaaaactgtttctgaaacaccagcaaaaagacaagattttgcctttgccttctttgtttttttctcctt-gtgaaacttcaattgagccata 17793550  T
Q  110 gttggattattcggcagtggaggaacttcataatcctcttctatggcttcccaaacatccaaagcttctaggtaagcctccattttgactgcccaaagtt 209  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||  |    
T  17793549 gttggattatttggcagcggaggaacttcataatcctcttctatggcttcccaaacgtccaaagcttctaggtaagcttccattttgacagcccaaatgt 17793450  T
Q  210 catagttgttcccatcaaagagaggaggggcaactt 245  Q
    |||| ||||||||||||||||||||||| |||||||    
T  17793449 cataattgttcccatcaaagagaggaggagcaactt 17793414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 245
Target Start/End: Complemental strand, 25428776 - 25428542
Alignment:
Q  13 attctagtgaaaactgtttctgaaacaccagcaaagagacatgattttgctttcacctt---agtttttctctcctttgtgatatttcaactgagccatg 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||   ||||||||||||||| ||||||||||||||||| |||     
T  25428776 attctagtgaaaactgtttctgaaacaccagcaaagagacatgattttgctttcgccttcttagtttttctctcctt-gtgatatttcaactgagtcata 25428678  T
Q  110 gttggattattcggcagtggaggaacttcataatcctcttctatggcttcccaaacatccaaagcttctaggtaagcctccattttgactgcccaaagtt 209  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  25428677 gttggattattcggcagtggaggaacttcataatcttcttctatggcttcccaaacttccaaagcttctaggtaagcctccatttttactgcccaaagtt 25428578  T
Q  210 catagttgttcccatcaaagagaggaggggcaactt 245  Q
    |||||||||||||||||||||||||||| |||||||    
T  25428577 catagttgttcccatcaaagagaggaggagcaactt 25428542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 13 - 245
Target Start/End: Complemental strand, 1541526 - 1541292
Alignment:
Q  13 attctagtgaaaactgtttctgaaacaccagcaaagagacatgattttgctttcacctta---gtttttctctcctttgtgatatttcaactgagccatg 109  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| ||  ||||    |||||| ||||||| |||| | ||||||||||||||     
T  1541526 attctagtgaaaactgtttctgaaacaccagcaaaaagacatgattttgcctttgccttctttgtttttttctcctt-gtgaaacttcaactgagccata 1541428  T
Q  110 gttggattattcggcagtggaggaacttcataatcctcttctatggcttcccaaacatccaaagcttctaggtaagcctccattttgactgcccaaagtt 209  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||  |    
T  1541427 gttggattatttggcagcggaggaacttcataatcctcttctatggcttcccaaacgtccaaagcttctaggtaagcctccattttgacagcccaaatgt 1541328  T
Q  210 catagttgttcccatcaaagagaggaggggcaactt 245  Q
    |||||||||||||||||||||||||||| |||||||    
T  1541327 catagttgttcccatcaaagagaggaggagcaactt 1541292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 72 - 230
Target Start/End: Complemental strand, 16938007 - 16937850
Alignment:
Q  72 agtttttctctcctttgtgatatttcaactgagccatggttggattattcggcagtggaggaacttcataatcctcttctatggcttcccaaacatccaa 171  Q
    ||||||||||||||| ||||||||| |||||||||||||| |||||||||||||| |||||||| | |||||||||||| ||||| ||||||||||||||    
T  16938007 agtttttctctcctt-gtgatattttaactgagccatggtaggattattcggcagcggaggaacattataatcctcttcaatggcctcccaaacatccaa 16937909  T
Q  172 agcttctaggtaagcctccattttgactgcccaaagttcatagttgttcccatcaaaga 230  Q
    ||| |||||||||| ||||||| | ||| |||| |  |||||||| | |||||||||||    
T  16937908 agcctctaggtaagactccattcttacttcccacatgtcatagttctccccatcaaaga 16937850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 72 - 243
Target Start/End: Complemental strand, 15537660 - 15537490
Alignment:
Q  72 agtttttctctcctttgtgatatttcaactgagccatggttggattattcggcagtggaggaacttcataatcctcttctatggcttcccaaacatccaa 171  Q
    ||||||||||||||| ||||||||| |||||||||||||| ||||||||| |||| ||||||||||||||||||||||| |   | ||||||||||||||    
T  15537660 agtttttctctcctt-gtgatattttaactgagccatggtaggattattctgcagcggaggaacttcataatcctcttcaacaacctcccaaacatccaa 15537562  T
Q  172 agcttctaggtaagcctccattttgactgcccaaagttcatagttgttcccatcaaagagaggaggggcaac 243  Q
    ||| || | ||| | ||||||| | ||||||||||| |||||||| | ||||||||||| |||||| |||||    
T  15537561 agcctccaagtatggctccattcttactgcccaaaggtcatagttctccccatcaaagacaggaggagcaac 15537490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 172
Target Start/End: Original strand, 56360994 - 56361055
Alignment:
Q  111 ttggattattcggcagtggaggaacttcataatcctcttctatggcttcccaaacatccaaa 172  Q
    |||||||||||| || ||||||||  | |||||| |||| ||||||||||||||| ||||||    
T  56360994 ttggattattcgacaatggaggaatctgataatcttcttttatggcttcccaaacgtccaaa 56361055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 13 - 245
Target Start/End: Complemental strand, 49211335 - 49211101
Alignment:
Q  13 attctagtgaaaactgtttctgaaacaccagcaaagagacatgattttgctttcacctt---agtttttctctcctttgtgatatttcaactgagccatg 109  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||   ||||||| ||||||| |||||||||||||||||||||     
T  49211335 attctagtgaaaattgtttctgaaacaccagcaaagagacatgattttgttttcgccttcttagtttttttctcctt-gtgatatttcaactgagccata 49211237  T
Q  110 gttggattattcggcagtggaggaacttcataatcctcttctatggcttcccaaacatccaaagcttctaggtaagcctccattttgactgcccaaagtt 209  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||    
T  49211236 gttggattattcggcagtggaggaactttataatcctcttctatggcttcccaaacttccaaagcttctaggtaagcctccatttttactgctcaaagtt 49211137  T
Q  210 catagttgttcccatcaaagagaggaggggcaactt 245  Q
    ||||||||||| ||||||||||||||||||||||||    
T  49211136 catagttgttctcatcaaagagaggaggggcaactt 49211101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 13 - 245
Target Start/End: Complemental strand, 26401159 - 26400925
Alignment:
Q  13 attctagtgaaaactgtttctgaaacaccagcaaagagacatgattttgctttcacctta---gtttttctctcctttgtgatatttcaactgagccatg 109  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| ||  ||||    |||||| ||||||| |||| | ||||||||||||||     
T  26401159 attctagtgaaaactgtttctgaaacaccagcaaaaagacatgattttgcctttgccttctttgtttttttctcctt-gtgaaacttcaactgagccata 26401061  T
Q  110 gttggattattcggcagtggaggaacttcataatcctcttctatggcttcccaaacatccaaagcttctaggtaagcctccattttgactgcccaaagtt 209  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||  |    
T  26401060 gttggattatttggcagcggaggaacttcataatcctcttctatggcttcccaaacgtccaaagcttctaggtaagcctccattttgacagcccaaatgt 26400961  T
Q  210 catagttgttcccatcaaagagaggaggggcaactt 245  Q
    |||||||||||||||||||||||||||| |||||||    
T  26400960 catagttgttcccatcaaagagaggaggagcaactt 26400925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 13 - 245
Target Start/End: Complemental strand, 7034228 - 7033994
Alignment:
Q  13 attctagtgaaaactgtttctgaaacaccagcaaagagacatgattttgctttcacctta---gtttttctctcctttgtgatatttcaactgagccatg 109  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| ||  ||||    |||||| ||||||| |||| | ||||||||||||||     
T  7034228 attctagtgaaaactgtttctgaaacaccagcaaaaagacatgattttgcctttgccttctttgtttttttctcctt-gtgaaacttcaactgagccata 7034130  T
Q  110 gttggattattcggcagtggaggaacttcataatcctcttctatggcttcccaaacatccaaagcttctaggtaagcctccattttgactgcccaaagtt 209  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||  |    
T  7034129 gttggattatttggcagcggaggaacttcataatcctcttctatggcttcccaaacgtccaaagcttctaggtaagcctccattttgacagcccaaatgt 7034030  T
Q  210 catagttgttcccatcaaagagaggaggggcaactt 245  Q
    |||||||||||||||||||||||||||| |||||||    
T  7034029 catagttgttcccatcaaagagaggaggagcaactt 7033994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 72 - 243
Target Start/End: Complemental strand, 26254213 - 26254043
Alignment:
Q  72 agtttttctctcctttgtgatatttcaactgagccatggttggattattcggcagtggaggaacttcataatcctcttctatggcttcccaaacatccaa 171  Q
    ||||||||||||||| ||||||||| || ||||||||||| |||||||||||||| ||| ||||||||||||||||||| | ||| ||||||||||||||    
T  26254213 agtttttctctcctt-gtgatattttaattgagccatggtaggattattcggcagcggaagaacttcataatcctcttcaacggcctcccaaacatccaa 26254115  T
Q  172 agcttctaggtaagcctccattttgactgcccaaagttcatagttgttcccatcaaagagaggaggggcaac 243  Q
    ||| |||||||||| ||||||| | ||||||||||| |||||||| | |||||||||||  ||||| |||||    
T  26254114 agcctctaggtaagactccattcttactgcccaaaggtcatagttctccccatcaaagacgggaggagcaac 26254043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 72 - 245
Target Start/End: Complemental strand, 18011388 - 18011216
Alignment:
Q  72 agtttttctctcctttgtgatatttcaactgagccatggttggattattcggcagtggaggaacttcataatcctcttctatggcttcccaaacatccaa 171  Q
    ||||||||||||||| ||||||||| |||||||||||||| ||||||||| |||| ||||||||||||||||||||||| |  || ||||||||||||||    
T  18011388 agtttttctctcctt-gtgatattttaactgagccatggtaggattattctgcagcggaggaacttcataatcctcttcaacagcctcccaaacatccaa 18011290  T
Q  172 agcttctaggtaagcctccattttgactgcccaaagttcatagttgttcccatcaaagagaggaggggcaactt 245  Q
    ||| || ||||||| ||||||| | ||||||||||| | |||||| | ||||||||||| |||||| |||||||    
T  18011289 agcctccaggtaagactccattcttactgcccaaaggttatagttctccccatcaaagacaggaggagcaactt 18011216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 72 - 243
Target Start/End: Complemental strand, 43441846 - 43441676
Alignment:
Q  72 agtttttctctcctttgtgatatttcaactgagccatggttggattattcggcagtggaggaacttcataatcctcttctatggcttcccaaacatccaa 171  Q
    ||||||||||||||| ||||||||| || ||||||||||| |||||||||||||| ||| |||||||| |||||||||| | ||| ||||||||||||||    
T  43441846 agtttttctctcctt-gtgatattttaattgagccatggtaggattattcggcagcggaagaacttcaaaatcctcttcaacggcctcccaaacatccaa 43441748  T
Q  172 agcttctaggtaagcctccattttgactgcccaaagttcatagttgttcccatcaaagagaggaggggcaac 243  Q
    ||| |||||||||| ||||||| | ||||||||||| |||||||| | |||||||||||  ||||| |||||    
T  43441747 agcctctaggtaagactccattcttactgcccaaaggtcatagttctccccatcaaagacgggaggagcaac 43441676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 72 - 243
Target Start/End: Complemental strand, 8986180 - 8986010
Alignment:
Q  72 agtttttctctcctttgtgatatttcaactgagccatggttggattattcggcagtggaggaacttcataatcctcttctatggcttcccaaacatccaa 171  Q
    ||||||||||||||| ||||||||| || ||||||||||| |||||||||||||| ||| ||||||||||||| ||||| | ||| ||||||||||||||    
T  8986180 agtttttctctcctt-gtgatattttaattgagccatggtaggattattcggcagcggaagaacttcataatcatcttcaacggcctcccaaacatccaa 8986082  T
Q  172 agcttctaggtaagcctccattttgactgcccaaagttcatagttgttcccatcaaagagaggaggggcaac 243  Q
    ||| |||||||||| ||||||| | ||||||||||| |||||||| | |||||||||||  ||||| |||||    
T  8986081 agcctctaggtaagactccattcttactgcccaaaggtcatagttctccccatcaaagacgggaggagcaac 8986010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 72 - 243
Target Start/End: Original strand, 35973027 - 35973197
Alignment:
Q  72 agtttttctctcctttgtgatatttcaactgagccatggttggattattcggcagtggaggaacttcataatcctcttctatggcttcccaaacatccaa 171  Q
    ||||||||||||||| ||||||||| || ||||||||||| |||||||||||||| ||| |||||||| |||||||||| | ||| ||||||||||||||    
T  35973027 agtttttctctcctt-gtgatattttaattgagccatggtaggattattcggcagcggaagaacttcacaatcctcttcaacggcctcccaaacatccaa 35973125  T
Q  172 agcttctaggtaagcctccattttgactgcccaaagttcatagttgttcccatcaaagagaggaggggcaac 243  Q
    ||| |||||||||| ||||||| | ||||||||||| |||||||| | |||||||||||  ||||| |||||    
T  35973126 agcctctaggtaagactccattcttactgcccaaaggtcatagttctccccatcaaagacgggaggagcaac 35973197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 72 - 243
Target Start/End: Original strand, 35994439 - 35994609
Alignment:
Q  72 agtttttctctcctttgtgatatttcaactgagccatggttggattattcggcagtggaggaacttcataatcctcttctatggcttcccaaacatccaa 171  Q
    ||||||||||||||| ||||||||| || ||||||||||| |||||||||||||| ||| |||||||| |||||||||| | ||| ||||||||||||||    
T  35994439 agtttttctctcctt-gtgatattttaattgagccatggtaggattattcggcagcggaagaacttcacaatcctcttcaacggcctcccaaacatccaa 35994537  T
Q  172 agcttctaggtaagcctccattttgactgcccaaagttcatagttgttcccatcaaagagaggaggggcaac 243  Q
    ||| |||||||||| ||||||| | ||||||||||| |||||||| | |||||||||||  ||||| |||||    
T  35994538 agcctctaggtaagactccattcttactgcccaaaggtcatagttctccccatcaaagacgggaggagcaac 35994609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 72 - 243
Target Start/End: Complemental strand, 43583061 - 43582891
Alignment:
Q  72 agtttttctctcctttgtgatatttcaactgagccatggttggattattcggcagtggaggaacttcataatcctcttctatggcttcccaaacatccaa 171  Q
    ||||||||||||||| ||||||||| || ||||||||||| |||||||||||||| ||| ||||||||||||||||||| | | | ||||||||||||||    
T  43583061 agtttttctctcctt-gtgatattttaattgagccatggtaggattattcggcagcggaagaacttcataatcctcttcaacgacctcccaaacatccaa 43582963  T
Q  172 agcttctaggtaagcctccattttgactgcccaaagttcatagttgttcccatcaaagagaggaggggcaac 243  Q
    ||| |||||||||| ||||||| | |||||| |||| |||||||| | |||||||||||  ||||| |||||    
T  43582962 agcctctaggtaagactccattcttactgcctaaaggtcatagttctccccatcaaagacgggaggagcaac 43582891  T

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Target: scaffold0012 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 192
Target Start/End: Original strand, 154287 - 154379
Alignment:
Q  100 ctgagccatggttggattattcggcagtggaggaacttcataatcctcttctatggcttcccaaacatccaaagcttctaggtaagcctccat 192  Q
    |||||||||||| ||||| || || || |||||||| |||||||| ||||| |   ||||||||| ||| ||||| |||||||| || |||||    
T  154287 ctgagccatggtgggattctttggaagcggaggaacatcataatcttcttccacatcttcccaaagatctaaagcatctaggtaggcttccat 154379  T

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