View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2746_low_4 (Length: 586)
Name: NF2746_low_4
Description: NF2746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2746_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 56172950 - 56173372
Alignment:
| Q |
1 |
aaagattgtagcttttgttatacgatgaagctcatggttcgtgtgattgaagcaaaaaacttggtaggtttggattccaatgggttaagtgaattgtatg |
100 |
Q |
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| T |
56172950 |
aaagatcgtagcttttgttatacgatgaagctcgtggttcgtgtgattgaagcaaaaaacttggtaggtttggattccaatgggttaagtgaattgtatg |
56173049 |
T |
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| Q |
101 |
tgcgattaaagttgggaaaacagaagttcaggacaaaggtgataaagaagaatatgaatccaaattgggatgaacaattttgcttttgggttgatgatct |
200 |
Q |
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| T |
56173050 |
tgcgattaaagttgggaaaacagaagttcaggacaaaggtgataaagaagaatatgaatccaaattgggatgaacaattttgcttttgggttgatgatct |
56173149 |
T |
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| Q |
201 |
taaagaatcacttattatttctgtcaaggatgaagataagtttattaataatcatttggttggaagacttaaacttccaatttcacttgtttttgaggaa |
300 |
Q |
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| T |
56173150 |
taaagaatcacttattatttctgtcaaggatgaagataagtttattaataatcatttggttggaagacttaaacttccaatttcacttgtttttgaggaa |
56173249 |
T |
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| Q |
301 |
gacattaaatcccttggcaatgcttggtacattttgaagccaaaaaagaagaagtcaaagaataaggaatgtggtatattttctcatacccttatccaac |
400 |
Q |
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| T |
56173250 |
gacattaaatcccttggcaatgcttggtacattttgaagccaaaaaagaagaagtcaaagaataaggaatgtggtatattttctcatacccttatccaac |
56173349 |
T |
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| Q |
401 |
aattattttatatggcatggcaa |
423 |
Q |
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| T |
56173350 |
aattattttatatggcatggcaa |
56173372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 462 - 552
Target Start/End: Original strand, 56173371 - 56173458
Alignment:
| Q |
462 |
aaaaaactttgattcacaaatgttagtaaattagtagttatgtctctcagcttaccaacctaactatctgctagctgcttgagtctctcta |
552 |
Q |
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| T |
56173371 |
aaaaaactttgatagacaaatgtta---aattagtagttatgtctctcagcttaccaacctaactatctgctagctgcttgagtctctcta |
56173458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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