View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2746_low_43 (Length: 238)
Name: NF2746_low_43
Description: NF2746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2746_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 8 - 222
Target Start/End: Complemental strand, 26122511 - 26122296
Alignment:
| Q |
8 |
tgcatttcatatcgatcactttt-caacttttatgttcttgtagaacatatgcttgccgctgctgatttgagaaggtagaagattctttgttgtttacca |
106 |
Q |
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| T |
26122511 |
tgcatttcatatcgatcactttttcaacttttatgttcttgtagaacatatgctggacgctgctgatttgagaagggagaagattctttgttgtgtacca |
26122412 |
T |
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| Q |
107 |
gaagcgaggtaatcaagcaatcatatttcatgttgaagtaataagtaatacttgatactcgataacttacacaagtaatctatctatctatatataatag |
206 |
Q |
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| T |
26122411 |
gaagcgaggtaatcaagcaatcatatttcatgttgaagtaataagtaatacttgatactcgataacttacacaagaaatctatctatctatatataatag |
26122312 |
T |
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| Q |
207 |
gaatctatgtgataga |
222 |
Q |
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|||||||| ||||||| |
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| T |
26122311 |
gaatctatatgataga |
26122296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 49 - 126
Target Start/End: Complemental strand, 26246441 - 26246364
Alignment:
| Q |
49 |
agaacatatgcttgccgctgctgatttgagaaggtagaagattctttgttgtttaccagaagcgaggtaatcaagcaa |
126 |
Q |
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| T |
26246441 |
agaacatatgctggccgctgctgatttgagaagggataagattctttgttgtgtaccagaagcgaggtaatcaagcaa |
26246364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 118 - 176
Target Start/End: Complemental strand, 26245269 - 26245211
Alignment:
| Q |
118 |
atcaagcaatcatatttcatgttgaagtaataagtaatacttgatactcgataacttac |
176 |
Q |
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| T |
26245269 |
atcaagcaatcatatttcatgttgaagtaataagtaatacttgatactcgataacttac |
26245211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 57 - 134
Target Start/End: Complemental strand, 26222543 - 26222466
Alignment:
| Q |
57 |
tgcttgccgctgctgatttgagaaggtagaagattctttgttgtttaccagaagcgaggtaatcaagcaatcatattt |
134 |
Q |
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| T |
26222543 |
tgctggccgctgctgatttgagaaaggggaagattctttcttgtgtacaagaagcgaggtaatcaagatatcatattt |
26222466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 26123786 - 26123731
Alignment:
| Q |
1 |
aagtagttgcatttcatatcgatcac-ttttcaacttttatgttcttgtagaacat |
55 |
Q |
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| T |
26123786 |
aagtagttgcatttcatttcgatcacattttcaacttttgtgttcttgtagaacat |
26123731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 26168303 - 26168248
Alignment:
| Q |
1 |
aagtagttgcatttcatatcgatcac-ttttcaacttttatgttcttgtagaacat |
55 |
Q |
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||||||||| ||||||| |||||||| |||||||||||| |||||||||||||||| |
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| T |
26168303 |
aagtagttgtatttcatttcgatcacattttcaacttttctgttcttgtagaacat |
26168248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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