View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2746_low_46 (Length: 236)

Name: NF2746_low_46
Description: NF2746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2746_low_46
NF2746_low_46
[»] chr1 (1 HSPs)
chr1 (71-155)||(52512818-52512901)
[»] chr7 (3 HSPs)
chr7 (22-75)||(31711839-31711892)
chr7 (18-48)||(3239533-3239563)
chr7 (22-59)||(10578183-10578220)
[»] chr5 (2 HSPs)
chr5 (18-53)||(3109396-3109431)
chr5 (22-75)||(15884653-15884706)
[»] chr3 (1 HSPs)
chr3 (24-75)||(33374611-33374662)
[»] chr8 (1 HSPs)
chr8 (18-75)||(40528860-40528917)
[»] chr2 (3 HSPs)
chr2 (22-75)||(33045659-33045712)
chr2 (22-59)||(40443165-40443202)
chr2 (22-59)||(40504342-40504379)
[»] chr4 (1 HSPs)
chr4 (18-58)||(4915006-4915046)


Alignment Details
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 71 - 155
Target Start/End: Complemental strand, 52512901 - 52512818
Alignment:
Q  71 ttgttaatcgttagattttgtgacatgttcttaaaaaatctattataccagtaaattagcggcattcattcataattttaaaggt 155  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  52512901 ttgttaat-gttagattttgtgacatgttcttaaaaaatctattatactagtaaattagcggcattcattcataattttaaaggt 52512818  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 31711892 - 31711839
Alignment:
Q  22 acattcctttatatattttggttgtcccacaaattatcgtataaagtggttgtt 75  Q
    ||||| |||| ||||||||||||||||||||||||||| || ||| ||||||||    
T  31711892 acatttctttctatattttggttgtcccacaaattatcctacaaaatggttgtt 31711839  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 3239533 - 3239563
Alignment:
Q  18 acctacattcctttatatattttggttgtcc 48  Q
    |||||||||||||||||||||||||||||||    
T  3239533 acctacattcctttatatattttggttgtcc 3239563  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 10578183 - 10578220
Alignment:
Q  22 acattcctttatatattttggttgtcccacaaattatc 59  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  10578183 acatttctttctatattttggttgtcccacaaattatc 10578220  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 53
Target Start/End: Complemental strand, 3109431 - 3109396
Alignment:
Q  18 acctacattcctttatatattttggttgtcccacaa 53  Q
    ||||||||| ||||||||||||||||||||||||||    
T  3109431 acctacatttctttatatattttggttgtcccacaa 3109396  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 15884706 - 15884653
Alignment:
Q  22 acattcctttatatattttggttgtcccacaaattatcgtataaagtggttgtt 75  Q
    ||||| |||| ||||||||||||||||||||| ||||| || ||| ||||||||    
T  15884706 acatttctttctatattttggttgtcccacaagttatcttacaaaatggttgtt 15884653  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 33374611 - 33374662
Alignment:
Q  24 attcctttatatattttggttgtcccacaaattatcgtataaagtggttgtt 75  Q
    |||||||||||||||||||||||  |||||||| || |||||| ||||||||    
T  33374611 attcctttatatattttggttgtttcacaaattgtcatataaaatggttgtt 33374662  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 40528860 - 40528917
Alignment:
Q  18 acctacattcctttatatattttggttgtcccacaaattatcgtataaagtggttgtt 75  Q
    ||||||||| | || ||||||||||||||||| ||||||||| ||| || ||||||||    
T  40528860 acctacatttccttgtatattttggttgtcccccaaattatcttatgaaatggttgtt 40528917  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 75
Target Start/End: Original strand, 33045659 - 33045712
Alignment:
Q  22 acattcctttatatattttggttgtcccacaaattatcgtataaagtggttgtt 75  Q
    ||||| |||| |||||||||||||||||||||||| || || ||| ||||||||    
T  33045659 acatttctttctatattttggttgtcccacaaattgtcatacaaaatggttgtt 33045712  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 40443165 - 40443202
Alignment:
Q  22 acattcctttatatattttggttgtcccacaaattatc 59  Q
    ||||| |||||||||||||||||||||||||| |||||    
T  40443165 acatttctttatatattttggttgtcccacaagttatc 40443202  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 40504342 - 40504379
Alignment:
Q  22 acattcctttatatattttggttgtcccacaaattatc 59  Q
    ||||| |||||||||||||||||||||||||| |||||    
T  40504342 acatttctttatatattttggttgtcccacaagttatc 40504379  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 4915006 - 4915046
Alignment:
Q  18 acctacattcctttatatattttggttgtcccacaaattat 58  Q
    ||||||||| ||||||||||||| ||||||| |||||||||    
T  4915006 acctacatttctttatatattttagttgtcctacaaattat 4915046  T

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