View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2746_low_48 (Length: 235)
Name: NF2746_low_48
Description: NF2746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2746_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 2920121 - 2920323
Alignment:
| Q |
1 |
accatattgtaccaaaatcaagtggagggtttagaggtgatgaccaaagatggacaatggataagctacaagccttcttcttcaggcagttttgtagcta |
100 |
Q |
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| T |
2920121 |
accatattgtaccaaaatcaagtggagggtttagaggtgatgaccaaagatggacaatggataagctacaagccttcttcttcaggcagttttgtagcta |
2920220 |
T |
|
| Q |
101 |
tgattggtgactctattcatgtaaattccattaaccattccttattaagaacaaattattattaaggttttaattcattgttaattgcgattgcatcagg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || || | |||| |||||||||||||||||||| ||| | || |||||||| |
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| T |
2920221 |
tgattggtgactctattcatgtaaattccattaaccattccttatcaattac---taattaataaggttttaattcattgttgattactatcgcatcagg |
2920317 |
T |
|
| Q |
201 |
atcctt |
206 |
Q |
| |
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|||||| |
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| T |
2920318 |
atcctt |
2920323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 2934938 - 2935066
Alignment:
| Q |
1 |
accatattgtaccaaaatcaagtggagggtttagaggtgatgaccaaagatggacaatggataagctacaagccttcttcttcaggcagttttgtagcta |
100 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| | |
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| T |
2934938 |
accatattgtaccaaaatcaagtggaaggtttagagatgatgaccaaagatggacaatggataagctacaagc---cttcttcaggaagttttgtagttg |
2935034 |
T |
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| Q |
101 |
tgattggtgactctattcatgtaaattccatt |
132 |
Q |
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|| ||||||| |||||||||||||||| |||| |
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| T |
2935035 |
tgcttggtgattctattcatgtaaatttcatt |
2935066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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