View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2746_low_49 (Length: 234)
Name: NF2746_low_49
Description: NF2746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2746_low_49 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 11 - 221
Target Start/End: Original strand, 54474563 - 54474773
Alignment:
| Q |
11 |
atgaactgcaaggtaacgatcaatttgaaaccattgagacccttttctccattgtgaaagttcaatcaatggcctcattctgtagttgtatcttccacgt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
54474563 |
atgaactgcaaggtaacgatcaatttgaaaccattgagacccttttctccattgtgaaagttcaatcaatggcctcattcggtagttgtatcttccacgt |
54474662 |
T |
|
| Q |
111 |
ccttgtgcacctcggatatcattagcttccacaaatgatagtcttgagttcattagataagtgtatattgtggagaaattgaacaatggtatgcatgatt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54474663 |
ccttgtgcacctcggatatcattagcttccacaaatgatagtcttgagttcattagataagtgtatattgtggagaaattgaacaatggtatgcatgatt |
54474762 |
T |
|
| Q |
211 |
ctgaaagtagt |
221 |
Q |
| |
|
||||||||||| |
|
|
| T |
54474763 |
ctgaaagtagt |
54474773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 5e-52; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 1140999 - 1140796
Alignment:
| Q |
18 |
gcaaggtaacgatcaatttgaaaccattgagacccttttctccattgtgaaagttcaatcaatggcctcattctgtagttgtatcttccacgtccttgtg |
117 |
Q |
| |
|
||||| |||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||| |||||||| ||| ||||||||||||||| |
|
|
| T |
1140999 |
gcaagataacgatcaatttggaaccattgagccccttttctccattgtgaaagttgaatcaatggtctcattctacggttatatcttccacgtcctacat |
1140900 |
T |
|
| Q |
118 |
cacctcggatatcattagcttccacaaatgatagtcttgagttcattagataagtgtatattgtggagaaattgaacaatggtatgcatgattctgaaag |
217 |
Q |
| |
|
||| | | |||||| | ||||||||||||| | || |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1140899 |
cacttggtatatcaattgcttccacaaatgtttgttttgagttcattagataagtgtagattgtggagaaattgaacaatggtatgcaatgttctgaaag |
1140800 |
T |
|
| Q |
218 |
tagt |
221 |
Q |
| |
|
|||| |
|
|
| T |
1140799 |
tagt |
1140796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 13 - 220
Target Start/End: Complemental strand, 1137543 - 1137336
Alignment:
| Q |
13 |
gaactgcaaggtaacgatcaatttgaaaccattgagacccttttctccattgtgaaagttcaatcaatggcctcattctgtagttgtatcttccacgtcc |
112 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||| | |||||| ||| |||||| ||||||| |
|
|
| T |
1137543 |
gaactgcaagataacgatcaatttggaaccattgagccccttttctccattgtgaaagttgaatcaatggacacattctacggttatatcttacacgtcc |
1137444 |
T |
|
| Q |
113 |
ttgtgcacctcggatatcattagcttccacaaatgatagtcttgagttcattagataagtgtatattgtggagaaattgaacaatggtatgcatgattct |
212 |
Q |
| |
|
| |||| | |||||||||||||||||||||| | || |||| ||||||||||||||||| |||||| |||||||||||||||||||||| |||| |
|
|
| T |
1137443 |
tacacgacctggaatatcattagcttccacaaatgtttgttttgatttcattagataagtgtagattgtgaagaaattgaacaatggtatgcaatgttct |
1137344 |
T |
|
| Q |
213 |
gaaagtag |
220 |
Q |
| |
|
|||||||| |
|
|
| T |
1137343 |
gaaagtag |
1137336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 22841664 - 22841722
Alignment:
| Q |
156 |
gagttcattagataagtgtatattgtggagaaattgaacaatggtatgcatgattctga |
214 |
Q |
| |
|
|||||||||||||||| ||| | ||| ||||| ||||| | |||||||||||||||||| |
|
|
| T |
22841664 |
gagttcattagataagagtagactgttgagaagttgaagagtggtatgcatgattctga |
22841722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 11 - 221
Target Start/End: Original strand, 31266614 - 31266824
Alignment:
| Q |
11 |
atgaactgcaaggtaacgatcaatttgaaaccattgagacccttttctccattgtgaaagttcaatcaatggcctcattctgtagttgtatcttccacgt |
110 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||| | ||||||||||| |||||| |
|
|
| T |
31266614 |
atgaagtgcaagggaacgatcaatttgaaaccattgtgacccttttctccattgtgaaagtttaatcaatggactcattttatagttgtatctaccacgt |
31266713 |
T |
|
| Q |
111 |
ccttgtgcacctcggatatcattagcttccacaaatgatagtct-tgagttcattagataagtgtatattgtggagaaattgaacaatggtatgcatgat |
209 |
Q |
| |
|
|| |||||| | |||| ||||||||||| | | ||| |||||||||||| |||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
31266714 |
ccaacggcaccttctaggtcataggcttccacaaa-ggttttctctgagttcattaggtaagtgtagattgtagagaaattgaacaatggtatgcatgat |
31266812 |
T |
|
| Q |
210 |
tctgaaagtagt |
221 |
Q |
| |
|
|||||||||||| |
|
|
| T |
31266813 |
tctgaaagtagt |
31266824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 154 - 221
Target Start/End: Original strand, 48323561 - 48323628
Alignment:
| Q |
154 |
ttgagttcattagataagtgtatattgtggagaaattgaacaatggtatgcatgattctgaaagtagt |
221 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
48323561 |
ttgagttcattagataagtataaattgtggagaaattgaacaatggtatacatgattctgaaagtagt |
48323628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 48323477 - 48323526
Alignment:
| Q |
19 |
caaggtaacgatcaatttgaaaccattgagacccttttctccattgtgaa |
68 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
48323477 |
caaggtaacggtcaatttgaaaccattgagacccttttttccattgtgaa |
48323526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University