View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2746_low_6 (Length: 521)
Name: NF2746_low_6
Description: NF2746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2746_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 15 - 500
Target Start/End: Complemental strand, 12813741 - 12813261
Alignment:
| Q |
15 |
aaaatattttatgtttagaagatagggttaaaatggaatgtnnnnnnntatatatgtggcggcagtcaattgtgtatttgttggatcgtggtgtgtttcg |
114 |
Q |
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| T |
12813741 |
aaaatattttatgtttagaagatagggttaaaatggaatgtaaaaaaatatatatgtggcgg---tcaattgtgtatttgttggatcgtggtgtgtttcg |
12813645 |
T |
|
| Q |
115 |
tgggtggcttactggtgatggcctacaagaagagttgaggaagttggctcttcaggaggttattggaatgtatgatcattctcttactggtgttagaaaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12813644 |
tgggtggcttactggtgatggcctacaagaagagttgaggaagttggctcttcaggaggttattggaatgtatgatcattctcttactggtgttagaaaa |
12813545 |
T |
|
| Q |
215 |
ccacttttgcaatcatctgtcaaaccctcaaacgaaactaatcaccaatcttactcttcctctttcnnnnnnnnncaattcaaacaatgatagagatgat |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
12813544 |
ccacttttgcaatcatctgtcaaaccctcaaacgaaactaatcaccaatcttactcttcctctttc--tttgtttcaattcaaacagtgatagagatgat |
12813447 |
T |
|
| Q |
315 |
ttatgggtttcaaagaaagagataatgatatttgaagcttttcaatttcgtcgatgcaggagaatgattggaaagaaacattgtatcttttgaagctatt |
414 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12813446 |
ttatgggtttcaaagaaagagataatgatatttgaaacttttcaatttcgtcgatgcaggagaatgattggaaagaaacattgtatcttttgaagctatt |
12813347 |
T |
|
| Q |
415 |
cattttcttcaatccttctctaatttgaagacctaataatgtttaaatgcatatggttattaattttgaagaggcacataggatga |
500 |
Q |
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| T |
12813346 |
cattttcttcaattcttctctaatttgaagacctagtaatgtttaaatgcatatggttcttaattttgaagaggcacataggatga |
12813261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 193; Significance: 1e-104; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 296 - 504
Target Start/End: Complemental strand, 22418305 - 22418097
Alignment:
| Q |
296 |
aaacaatgatagagatgatttatgggtttcaaagaaagagataatgatatttgaagcttttcaatttcgtcgatgcaggagaatgattggaaagaaacat |
395 |
Q |
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| T |
22418305 |
aaacaatgatagagatgatatatgggtttcaaagaaagagataatgatatttgaagcttttcaatttcgtcgatgcaggagaatgattggaaagaaacat |
22418206 |
T |
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| Q |
396 |
tgtatcttttgaagctattcattttcttcaatccttctctaatttgaagacctaataatgtttaaatgcatatggttattaattttgaagaggcacatag |
495 |
Q |
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| T |
22418205 |
tgtatcttttgaagctattcattttcttcaatcctactctaatttgaagacctagtaatgtttaaatgcatatggttcttaattttgaagaggcacatag |
22418106 |
T |
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| Q |
496 |
gatgatttt |
504 |
Q |
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||||||||| |
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| T |
22418105 |
gatgatttt |
22418097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 82 - 156
Target Start/End: Complemental strand, 22418378 - 22418304
Alignment:
| Q |
82 |
aattgtgtatttgttggatcgtggtgtgtttcgtgggtggcttactggtgatggcctacaagaagagttgaggaa |
156 |
Q |
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| T |
22418378 |
aattgcgtatttgttggatcgtggtgtgtttcgtgggtggcttactagtgatggcctacaagaagagttgaggaa |
22418304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 82 - 199
Target Start/End: Complemental strand, 30622111 - 30621994
Alignment:
| Q |
82 |
aattgtgtatttgttggatcgtggtgtgtttcgtgggtggcttactggtgatggcctacaagaagagttgaggaagttggctcttcaggaggttattgga |
181 |
Q |
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||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
30622111 |
aattgcgtatttgttggatcgtggtgtttttcgtgggtggcttactggtgatggcccacaagaggagttgaggaagttggctcttcacgaggttattgga |
30622012 |
T |
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| Q |
182 |
atgtatgatcattctctt |
199 |
Q |
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||||| |||||||||||| |
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| T |
30622011 |
atgtacgatcattctctt |
30621994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 290 - 391
Target Start/End: Complemental strand, 14998449 - 14998348
Alignment:
| Q |
290 |
caattcaaacaatgatagagatgatttatgggtttcaaagaaagagataatgatatttgaagcttttcaatttcgtcgatgcaggagaatgattggaaag |
389 |
Q |
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||||||||||| ||||| ||||||||| ||||||| |||||||||||||||||||||| |||||||||||||| || ||| || ||||| |||| ||||| |
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| T |
14998449 |
caattcaaacagtgataaagatgatttctgggtttgaaagaaagagataatgatattttaagcttttcaattttgtagatacatgagaaagatttgaaag |
14998350 |
T |
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| Q |
390 |
aa |
391 |
Q |
| |
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|| |
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|
| T |
14998349 |
aa |
14998348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 272
Target Start/End: Original strand, 48292638 - 48292701
Alignment:
| Q |
209 |
agaaaaccacttttgcaatcatctgtcaaaccctcaaacgaaactaatcaccaatcttactctt |
272 |
Q |
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||||| |||||||||| |||||||||||||||||||||| |||||||||||| ||| |||||| |
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| T |
48292638 |
agaaagccacttttgctctcatctgtcaaaccctcaaacgtaactaatcaccattctcactctt |
48292701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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