View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2746_low_7 (Length: 500)

Name: NF2746_low_7
Description: NF2746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2746_low_7
NF2746_low_7
[»] chr3 (17 HSPs)
chr3 (18-489)||(4129672-4130143)
chr3 (18-489)||(4092193-4092664)
chr3 (91-489)||(4060529-4060930)
chr3 (100-489)||(4115016-4115408)
chr3 (91-489)||(4080138-4080538)
chr3 (28-186)||(2919554-2919712)
chr3 (23-172)||(11497525-11497674)
chr3 (18-150)||(5051962-5052094)
chr3 (418-489)||(3885137-3885208)
chr3 (23-237)||(911564-911778)
chr3 (47-171)||(3913407-3913531)
chr3 (33-155)||(11491068-11491190)
chr3 (418-490)||(3913778-3913850)
chr3 (33-125)||(5965912-5966004)
chr3 (33-231)||(3885395-3885593)
chr3 (103-178)||(5965838-5965913)
chr3 (124-180)||(7492316-7492372)
[»] chr1 (5 HSPs)
chr1 (100-489)||(13933096-13933488)
chr1 (34-154)||(17311809-17311929)
chr1 (418-489)||(14005488-14005559)
chr1 (121-231)||(14005191-14005301)
chr1 (33-69)||(14005103-14005139)
[»] scaffold0267 (2 HSPs)
scaffold0267 (19-244)||(18665-18890)
scaffold0267 (318-489)||(18366-18537)
[»] chr4 (1 HSPs)
chr4 (33-208)||(5988530-5988705)
[»] chr8 (1 HSPs)
chr8 (34-154)||(18388082-18388208)
[»] scaffold0603 (1 HSPs)
scaffold0603 (22-114)||(4740-4832)
[»] chr5 (1 HSPs)
chr5 (18-69)||(16446955-16447006)


Alignment Details
Target: chr3 (Bit Score: 456; Significance: 0; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 18 - 489
Target Start/End: Complemental strand, 4130143 - 4129672
Alignment:
Q  18 ggtagttacttgctacaaatgcatgtctggcaagtaaagaccaacaatcttccttttccaaagatcttaaacggtggacagaaagaaaggtttgcattgg 117  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4130143 ggtagttacttgttacaaatgcatgtctggcaagtaaagaccaacaatcttccttttccaaagatcttaaacggtggacagaaagaaaggtttgcattgg 4130044  T
Q  118 taatgcaactctttcatctcgtgttgtgatgatgatcttactccccatttccccaacattaaagatgtcattcagattattccaaccaacatatcttcca 217  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4130043 taatgcaactctttcatctcgtgttgtgataatgatcttactccccatttccccaacattaaagatgtcattcagattattccaaccaacatatcttcca 4129944  T
Q  218 taccatatatcatccaatactagcaaatactttttgtctcgcaaactttgctgcaattgaacttgcaaaccgttcaaatcattagtcgtggttttttcag 317  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4129943 taccatatatcatccaatactagcaaaaactttttgtctcgcaaactttgctgcaattgaacttgcaaaccgttcaaatcattagtcgtggttttttcag 4129844  T
Q  318 aagtaacagattcaagaagggttttagtgatagtacaaacatcaaaatcttttgagacatgtgcccatcctctcgcctcaaatttccgcttcacatcgga 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  4129843 aagtaacagattcaagaagggttttagtgatagtacaaacatcaaaatcttttgagacatgtgcccatcctctcgcctcaaatttccgcttcacattgga 4129744  T
Q  418 atcattgtaaaggattttagctaatgttgttttccctagccctcccatacctacaatggaaatcactcctat 489  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4129743 atcattgtaaaggattttagctaatgttgttttccctagccctcccatacctacaatggaaatcactcctat 4129672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 489
Target Start/End: Original strand, 4092193 - 4092664
Alignment:
Q  18 ggtagttacttgctacaaatgcatgtctggcaagtaaagaccaacaatcttccttttccaaagatcttaaacggtggacagaaagaaaggtttgcattgg 117  Q
    ||||||| ||| ||||||||||||| || ||||||| |  ||| ||||||||  ||||||||||||||| | |||| ||| |||||||||||||||| ||    
T  4092193 ggtagtttctttctacaaatgcatgacttgcaagtatattccagcaatcttcagtttccaaagatcttacatggtgaacataaagaaaggtttgcatggg 4092292  T
Q  118 taatgcaactctttcatctcgtgttgtgatgatgatcttactccccatttccccaacattaaagatgtcattcagattattccaaccaacatatcttcca 217  Q
    || ||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||| | |||||||||||||||||||||||    
T  4092293 tagtgcaactctttcatctcgtgttgtgataatgatcttactccctattgccccaacattaaagatgtcattcatactattccaaccaacatatcttcca 4092392  T
Q  218 taccatatatcatccaatactagcaaatactttttgtctcgcaaactttgctgcaattgaacttgcaaaccgttcaaatcattagtcgtggttttttcag 317  Q
    ||||||||||||||||||||||||||| |  ||||||  |  |||||||||||||| |  ||||| | |   ||||| |||||||  ||||||||||| |    
T  4092393 taccatatatcatccaatactagcaaaaaacttttgttccttaaactttgctgcaacttcacttgtagaatattcaattcattagcggtggttttttctg 4092492  T
Q  318 aagtaacagattcaagaagggttttagtgatagtacaaacatcaaaatcttttgagacatgtgcccatcctctcgcctcaaatttccgcttcacatcgga 417  Q
    |||| |||||||||||||| |||||||||| |||   ||||| || |||||| |||||||||||||| |||||  ||||||||||| ||||||||||       
T  4092493 aagttacagattcaagaagagttttagtgacagtgacaacattaagatctttggagacatgtgcccaccctcttacctcaaatttctgcttcacatcatg 4092592  T
Q  418 atcattgtaaaggattttagctaatgttgttttccctagccctcccatacctacaatggaaatcactcctat 489  Q
     ||||||||||||| ||||||||  |||||||| |||||||||||||| || ||||||||||||||||||||    
T  4092593 gtcattgtaaaggagtttagctagcgttgtttttcctagccctcccatccccacaatggaaatcactcctat 4092664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 91 - 489
Target Start/End: Original strand, 4060529 - 4060930
Alignment:
Q  91 gtggacagaaagaaaggtttgcattggtaatgcaactctttcatctcgtgttgtgatgatgatcttactccccatttccccaacattaaagatgtcattc 190  Q
    |||||| | ||||||||||||||| | |  |||||| ||||||  || |||||||||||||||| |||| ||||||||||||||| ||||||||||  ||    
T  4060529 gtggactggaagaaaggtttgcatggttgctgcaacgctttcaaatcttgttgtgatgatgatcctacttcccatttccccaacactaaagatgtcgatc 4060628  T
Q  191 agattattccaac---caacatatcttccataccatatatcatccaatactagcaaatactttttgtctcgcaaactttgctgcaattgaacttgcaaac 287  Q
    | ||||||||| |   |||||||  ||||||||||||| ||||| | ||| |||||| |||||||   ||| |||||||| |||||||| || || | |     
T  4060629 aaattattccagcagtcaacatactttccataccatatgtcatcgagtacaagcaaaaactttttacttcgtaaactttgttgcaattgcacctgtagaa 4060728  T
Q  288 cgttcaaatcattagtcgtggttt-tttcagaagtaacagattcaagaagggttttagtgatagtacaaacatcaaaatcttttgagacatgtgcccatc 386  Q
      ||||| |||| ||| ||  ||| |||  ||||| ||||||| ||||| |||||||||||  ||   |||||||||||||||||||| ||||||||| |    
T  4060729 tattcaagtcatcagt-gtcatttctttttgaagtgacagattgaagaatggttttagtgacggtgacaacatcaaaatcttttgagatatgtgcccacc 4060827  T
Q  387 ctctcgcctcaaatttccgcttcacatcggaatcattgtaaaggattttagctaatgttgttttccctagccctcccatacctacaatggaaatcactcc 486  Q
    ||||    |||||||||  |||||| ||    ||||||||||||| |||||| | ||||||||| |||||||||||||| || |||||||||||||||||    
T  4060828 ctcttaaatcaaatttctccttcacttcatggtcattgtaaaggagtttagcaagtgttgtttttcctagccctcccatccccacaatggaaatcactcc 4060927  T
Q  487 tat 489  Q
    |||    
T  4060928 tat 4060930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 100 - 489
Target Start/End: Original strand, 4115016 - 4115408
Alignment:
Q  100 aagaaaggtttgcattggtaatgcaactctttcatctcgtgttgtgatgatgatcttactccccatttccccaacattaaagatgtcattcagattattc 199  Q
    |||||| |||||||| | |  ||| |||||||||| || |||||||||||||||| ||||||| |||||||||||| ||||||||||   || |||||||    
T  4115016 aagaaatgtttgcatggttgctgctactctttcatttcttgttgtgatgatgatcctactccctatttccccaacactaaagatgtcggccaaattattc 4115115  T
Q  200 caac---caacatatcttccataccatatatcatccaatactagcaaatactttttgtctcgcaaactttgctgcaattgaacttgcaaaccgttcaaat 296  Q
    || |   |||||||  ||||||||||||| ||||||| ||| |||||| ||||| | |  |  |||| ||| |||||||  ||||| | |   ||||  |    
T  4115116 cagcagtcaacatagtttccataccatatgtcatccagtacaagcaaaaactttgtattgcttaaacattgttgcaatttcacttgtagaatattcaggt 4115215  T
Q  297 cattagtcgtggttt-tttcagaagtaacagattcaagaagggttttagtgatagtacaaacatcaaaatcttttgagacatgtgcccatcctctcgcct 395  Q
    ||| ||| ||  ||| |||  ||||| || |||||||||| |||||||||||   |   |||||||||||| ||||||| ||||||||| |||||  |||    
T  4115216 catcagt-gtcatttctttttgaagtgacggattcaagaatggttttagtgacgatgacaacatcaaaatcctttgagatatgtgcccaccctcttacct 4115314  T
Q  396 caaatttccgcttcacatcggaatcattgtaaaggattttagctaatgttgttttccctagccctcccatacctacaatggaaatcactcctat 489  Q
    |||||||| ||||||||||    |||||||||||||||||||||| ||||||||| |||||||||||||| || ||||||||||||||||||||    
T  4115315 caaatttctgcttcacatcatggtcattgtaaaggattttagctagtgttgtttttcctagccctcccatccccacaatggaaatcactcctat 4115408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 91 - 489
Target Start/End: Original strand, 4080138 - 4080538
Alignment:
Q  91 gtggacagaaagaaaggtttgcattggtaatgcaactctttcatctcgtgttgtgatgatgatcttactccccatttccccaacattaaagatgtcattc 190  Q
    |||||| | ||||||||||||||| |||  |||||| ||||||  || |||||||||||||||| |||| ||||||||||||||| ||||||||||  ||    
T  4080138 gtggactggaagaaaggtttgcat-ggttgtgcaacgctttcaaatcttgttgtgatgatgatcctacttcccatttccccaacactaaagatgtcgatc 4080236  T
Q  191 agattattccaac---caacatatcttccataccatatatcatccaatactagcaaatactttttgtctcgcaaactttgctgcaattgaacttgcaaac 287  Q
    | ||||||||| |   |||||||  ||||||||||||| ||||| | ||  |||||| |||||||   ||  |||||||| |||||||| ||||| | |     
T  4080237 aaattattccagcactcaacatactttccataccatatgtcatcgagtaaaagcaaaaactttttacttcttaaactttgttgcaattgcacttgtagaa 4080336  T
Q  288 cgttcaaatcattagtcgtggttttt-tcagaagtaacagattcaagaagggttttagtgatagtacaaacatcaaaatcttttgagacatgtgcccatc 386  Q
      |||||  ||| ||| ||  ||| | |  ||||| ||||||||||| | |||||||||||  ||   |||||||||||||||||||| ||||||||| |    
T  4080337 tattcaaggcatcagt-gtcatttctctttgaagtgacagattcaaggatggttttagtgacggtgacaacatcaaaatcttttgagatatgtgcccacc 4080435  T
Q  387 ctctcgcctcaaatttccgcttcacatcggaatcattgtaaaggattttagctaatgttgttttccctagccctcccatacctacaatggaaatcactcc 486  Q
    ||||| |||||||||||  |||||| ||    || ||||| |||| |||||||| ||||||||| |||||||||||||| || |||||||||||||||||    
T  4080436 ctctcacctcaaatttctccttcacttcacggtcgttgtagaggagtttagctagtgttgtttttcctagccctcccatccccacaatggaaatcactcc 4080535  T
Q  487 tat 489  Q
    |||    
T  4080536 tat 4080538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 28 - 186
Target Start/End: Complemental strand, 2919712 - 2919554
Alignment:
Q  28 tgctacaaatgcatgtctggcaagtaaagaccaacaatcttccttttccaaagatcttaaacggtggacagaaagaaaggtttgcattggtaatgcaact 127  Q
    |||| |||||||||||||||||| ||||||||| ||||||||  |||||| |  ||| | |  ||||||| ||| |||||||||||| | || || ||||    
T  2919712 tgctccaaatgcatgtctggcaactaaagaccagcaatcttctgtttccagatgtctcatatagtggacataaaaaaaggtttgcatggatattggaact 2919613  T
Q  128 ctttcatctcgtgttgtgatgatgatcttactccccatttccccaacattaaagatgtc 186  Q
    |||||||||||||| |||||||||||| |||| ||  ||||| | ||||||||||||||    
T  2919612 ctttcatctcgtgtagtgatgatgatcctacttccagtttccaccacattaaagatgtc 2919554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 23 - 172
Target Start/End: Original strand, 11497525 - 11497674
Alignment:
Q  23 ttacttgctacaaatgcatgtctggcaagtaaagaccaacaatcttccttttccaaagatcttaaacggtggacagaaagaaaggtttgcattggtaatg 122  Q
    |||| |||| |||||||||| ||||||| ||||||||||||||||||  |||||| || | | |||  ||||||| ||| |||||||||||| | |  ||    
T  11497525 ttacatgctccaaatgcatgcctggcaactaaagaccaacaatcttcgctttccagaggtttcaaatagtggacataaaaaaaggtttgcatggattttg 11497624  T
Q  123 caactctttcatctcgtgttgtgatgatgatcttactccccatttcccca 172  Q
     ||||||||||||||||||||||||||||||| |||| ||| ||| ||||    
T  11497625 gaactctttcatctcgtgttgtgatgatgatcctacttccctttttccca 11497674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 5052094 - 5051962
Alignment:
Q  18 ggtagttacttgctacaaatgcatgtctggcaagtaaagaccaacaatcttccttttccaaagatcttaaacggtggacagaaagaaaggtttgcattgg 117  Q
    ||||||||| || | |||||||||||||||||| || |||||| ||||||||  ||||||||| ||| |||  ||||||| ||| |||| ||| ||| |     
T  5052094 ggtagttacgtggtccaaatgcatgtctggcaactatagaccagcaatcttcgctttccaaaggtctcaaatagtggacataaaaaaagctttccatgga 5051995  T
Q  118 taatgcaactctttcatctcgtgttgtgatgat 150  Q
    |  || |||||||||||||||||||||||||||    
T  5051994 ttttggaactctttcatctcgtgttgtgatgat 5051962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 418 - 489
Target Start/End: Complemental strand, 3885208 - 3885137
Alignment:
Q  418 atcattgtaaaggattttagctaatgttgttttccctagccctcccatacctacaatggaaatcactcctat 489  Q
    ||||||| |||||| |||||||| ||||||||| || ||||||||||| |||||||||||||||||||||||    
T  3885208 atcattgaaaaggagtttagctagtgttgtttttccaagccctcccatgcctacaatggaaatcactcctat 3885137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 237
Target Start/End: Original strand, 911564 - 911778
Alignment:
Q  23 ttacttgctacaaatgcatgtctggcaagtaaagaccaacaatcttccttttccaaagatcttaaacggtggacagaaagaaaggtttgcattggtaatg 122  Q
    |||| |||| ||||||||||| ||||||||||||||||||| || ||  || | | || | | |||  |||||  | ||||||||||||||  | || ||    
T  911564 ttacatgctccaaatgcatgtttggcaagtaaagaccaacactcgtcacttcctataggtgtcaaatagtggattggaagaaaggtttgcacggctagtg 911663  T
Q  123 caactctttcatctcgtgttgtgatgatgatcttactccccatttccccaacattaaagatgtcattcagattattccaaccaacatatcttccatacca 222  Q
    ||||||| |||||||||||||||| |||||  ||||| || |||| |||  ||||||||||||| || ||||| |||||| ||| |||   || || |||    
T  911664 caactctctcatctcgtgttgtgacgatgagtttacttcctattttcccggcattaaagatgtcctttagattgttccaatcaatatagtgtcgatccca 911763  T
Q  223 tatatcatccaatac 237  Q
    ||| |||||||||||    
T  911764 tatgtcatccaatac 911778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 47 - 171
Target Start/End: Original strand, 3913407 - 3913531
Alignment:
Q  47 gcaagtaaagaccaacaatcttccttttccaaagatcttaaacggtggacagaaagaaaggtttgcattggtaatgcaactctttcatctcgtgttgtga 146  Q
    |||||||||||||||||||||||  |    | |||||| |||  |||||||| ||||   |||||||||| ||||||||| |||||||| ||||||||||    
T  3913407 gcaagtaaagaccaacaatcttcactacgaagagatctcaaatagtggacaggaagatgagtttgcattgctaatgcaacactttcatcccgtgttgtga 3913506  T
Q  147 tgatgatcttactccccatttcccc 171  Q
    ||| ||||||||| |||| ||||||    
T  3913507 tgacgatcttacttcccacttcccc 3913531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 33 - 155
Target Start/End: Original strand, 11491068 - 11491190
Alignment:
Q  33 caaatgcatgtctggcaagtaaagaccaacaatcttccttttccaaagatcttaaacggtggacagaaagaaaggtttgcattggtaatgcaactctttc 132  Q
    |||||||||||||||||| ||||||||||||||||||  |||| | || ||| |||  ||||||| ||  ||| |||||||| | |  ||  | ||||||    
T  11491068 caaatgcatgtctggcaactaaagaccaacaatcttcgctttctagaggtctcaaatagtggacataagaaaaagtttgcatggattttggtagtctttc 11491167  T
Q  133 atctcgtgttgtgatgatgatct 155  Q
    |||||||||||||||||||||||    
T  11491168 atctcgtgttgtgatgatgatct 11491190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 418 - 490
Target Start/End: Original strand, 3913778 - 3913850
Alignment:
Q  418 atcattgtaaaggattttagctaatgttgttttccctagccctcccatacctacaatggaaatcactcctatg 490  Q
    |||||||||||| | |||||||| ||||||||| || | |||||||||||| ||||| || ||||||||||||    
T  3913778 atcattgtaaagtagtttagctagtgttgtttttccaatccctcccataccaacaatagatatcactcctatg 3913850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 125
Target Start/End: Complemental strand, 5966004 - 5965912
Alignment:
Q  33 caaatgcatgtctggcaagtaaagaccaacaatcttccttttccaaagatcttaaacggtggacagaaagaaaggtttgcattggtaatgcaa 125  Q
    |||||||||| | ||||||||||||||| ||||||||  ||||||||| | | ||   ||||||||||||||||||| |||| |||| |||||    
T  5966004 caaatgcatgcccggcaagtaaagaccagcaatcttcactttccaaaggtgtcaagtagtggacagaaagaaaggttcgcatgggtagtgcaa 5965912  T

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Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 231
Target Start/End: Complemental strand, 3885593 - 3885395
Alignment:
Q  33 caaatgcatgtctggcaagtaaagaccaacaatcttccttttccaaagatcttaaacggtggacagaaagaaaggtttgcattggtaatgcaactctttc 132  Q
    ||||||||||| |||||||||||||||| ||||||||  |  ||||||     ||| ||| || || || | |||||||||| |    |||||| |||||    
T  3885593 caaatgcatgtttggcaagtaaagaccagcaatcttcgctcgccaaaggcagcaaatggtagataggaaaagaggtttgcatagaccttgcaacactttc 3885494  T
Q  133 atctcgtgttgtgatgatgatcttactccccatttccccaacattaaagatgtcattcagattattccaaccaacatatcttccataccatatatcatc 231  Q
    ||||||||| ||||  |||||  |||| ||| |||| ||| || |||| |||||  | |||||||||||| ||||||| ||||||| ||| ||||||||    
T  3885493 atctcgtgtcgtgacaatgattctacttcccttttcaccagcactaaaaatgtccattagattattccaatcaacatagcttccatcccaaatatcatc 3885395  T

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Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 178
Target Start/End: Complemental strand, 5965913 - 5965838
Alignment:
Q  103 aaaggtttgcattggtaatgcaactctttcatctcgtgttgtgatgatgatcttactccccatttccccaacatta 178  Q
    ||||||||| |||| || ||||||| |||||||  ||||||||||||||||| |||| ||  |||| |||||||||    
T  5965913 aaaggtttgtattgatagtgcaactttttcatcctgtgttgtgatgatgatcctacttcctgtttcaccaacatta 5965838  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 180
Target Start/End: Original strand, 7492316 - 7492372
Alignment:
Q  124 aactctttcatctcgtgttgtgatgatgatcttactccccatttccccaacattaaa 180  Q
    |||| |||||||||||||||||||||||||| ||||  || ||| |||| |||||||    
T  7492316 aactttttcatctcgtgttgtgatgatgatcctactttccgttttcccagcattaaa 7492372  T

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Target: chr1 (Bit Score: 96; Significance: 7e-47; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 100 - 489
Target Start/End: Complemental strand, 13933488 - 13933096
Alignment:
Q  100 aagaaaggtttgcattggtaatgcaactctttcatctcgtgttgtgatgatgatcttactccccatttccccaacattaaagatgtcattcagattattc 199  Q
    ||||||||||||||| | |  |||||||||||||| || |||||||||||||| ||||||| || ||  |||||||||||| |||||| ||| | |||||    
T  13933488 aagaaaggtttgcatggttgctgcaactctttcatttcttgttgtgatgatgaccttactctcccttaacccaacattaaatatgtcaatcaaactattc 13933389  T
Q  200 caac---caacatatcttccataccatatatcatccaatactagcaaatactttttgtctcgcaaactttgctgcaattgaacttgcaaaccgttcaaat 296  Q
    || |   |||||||| |||||| |||||| ||||| | ||| |||||| |||||||   ||  |||||||| |||||||| ||||| |||   |||||      
T  13933388 cagcagtcaacatattttccatgccatatgtcatcgagtacaagcaaaaactttttacttcttaaactttgttgcaattgcacttgtaaaatattcaagg 13933289  T
Q  297 cattagtcgtggttttt-tcagaagtaacagattcaagaagggttttagtgatagtacaaacatcaaaatcttttgagacatgtgcccatcctctcgcct 395  Q
    ||| ||| ||  ||| | |  ||||| ||||||||||| | |||||||||||  ||   |||||||||||||||||||| ||||||||| |||||| |||    
T  13933288 catcagt-gtcatttctctttgaagtgacagattcaaggatggttttagtgacggtgacaacatcaaaatcttttgagatatgtgcccaccctctcacct 13933190  T
Q  396 caaatttccgcttcacatcggaatcattgtaaaggattttagctaatgttgttttccctagccctcccatacctacaatggaaatcactcctat 489  Q
    ||||||||  |||||| ||    || ||||| |||| |||||||| ||||||||| |||||||||||||| || ||||||||||||||||||||    
T  13933189 caaatttctccttcacttcacggtcgttgtagaggagtttagctagtgttgtttttcctagccctcccatccccacaatggaaatcactcctat 13933096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 34 - 154
Target Start/End: Complemental strand, 17311929 - 17311809
Alignment:
Q  34 aaatgcatgtctggcaagtaaagaccaacaatcttccttttccaaagatcttaaacggtggacagaaagaaaggtttgcattggtaatgcaactctttca 133  Q
    ||||||||||||||||| ||||||||||||||||||  |||| | || ||| |||  ||||||| ||| |||||||||||| | |  || ||||||||||    
T  17311929 aaatgcatgtctggcaactaaagaccaacaatcttcgctttctagaggtctcaaatagtggacataaaaaaaggtttgcatggattttggaactctttca 17311830  T
Q  134 tctcgtgttgtgatgatgatc 154  Q
    |||||||||||||| ||||||    
T  17311829 tctcgtgttgtgataatgatc 17311809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 418 - 489
Target Start/End: Original strand, 14005488 - 14005559
Alignment:
Q  418 atcattgtaaaggattttagctaatgttgttttccctagccctcccatacctacaatggaaatcactcctat 489  Q
    ||||||| |||||| |||||||| ||||||||| || ||||||||||| |||||||||||||||||||||||    
T  14005488 atcattgaaaaggagtttagctagtgttgtttttccaagccctcccatgcctacaatggaaatcactcctat 14005559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 121 - 231
Target Start/End: Original strand, 14005191 - 14005301
Alignment:
Q  121 tgcaactctttcatctcgtgttgtgatgatgatcttactccccatttccccaacattaaagatgtcattcagattattccaaccaacatatcttccatac 220  Q
    |||||| |||||||||||||| ||||  |||||  |||| ||| |||| ||| || |||| |||||  | |||||||||||| ||||||| ||||||| |    
T  14005191 tgcaacactttcatctcgtgtcgtgacaatgattctacttcccttttcaccagcactaaaaatgtccattagattattccaatcaacatagcttccatcc 14005290  T
Q  221 catatatcatc 231  Q
    || ||||||||    
T  14005291 caaatatcatc 14005301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 14005103 - 14005139
Alignment:
Q  33 caaatgcatgtctggcaagtaaagaccaacaatcttc 69  Q
    ||||||||||| |||||||||||||||| ||||||||    
T  14005103 caaatgcatgtttggcaagtaaagaccagcaatcttc 14005139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0267 (Bit Score: 86; Significance: 7e-41; HSPs: 2)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 19 - 244
Target Start/End: Complemental strand, 18890 - 18665
Alignment:
Q  19 gtagttacttgctacaaatgcatgtctggcaagtaaagaccaacaatcttccttttccaaagatcttaaacggtggacagaaagaaaggtttgcattggt 118  Q
    ||||||||||||| ||||||||||| | | ||||||||||||||| || ||  ||| ||  | |   |||  ||||| || ||||||||||||| |   |    
T  18890 gtagttacttgctccaaatgcatgttttgaaagtaaagaccaacattcatcactttgcatgggtgccaaatagtggataggaagaaaggtttgcgtgact 18791  T
Q  119 aatgcaactctttcatctcgtgttgtgatgatgatcttactccccatttccccaacattaaagatgtcattcagattattccaaccaacatatcttccat 218  Q
    | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||| |||||| | ||||| |||||||    
T  18790 agtgcaactctttcatctcgtgttgtgatgatgatcttacttcccatttccccaacattaaagatgtctttgagattgttccaatccacataacttccat 18691  T
Q  219 accatatatcatccaatactagcaaa 244  Q
     ||| || ||||||| ||||||||||    
T  18690 cccacatgtcatccagtactagcaaa 18665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0267; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 318 - 489
Target Start/End: Complemental strand, 18537 - 18366
Alignment:
Q  318 aagtaacagattcaagaagggttttagtgata-gtacaaacatcaaaatcttttgagacatgtgcccatcctctcgcctcaaatttccgcttcacatcgg 416  Q
    ||||||||||||||||||||||||||||||   | ||||  ||||||||||||||||| || |||||| ||| ||   |||||||||  ||| || || |    
T  18537 aagtaacagattcaagaagggttttagtgacccggacaat-atcaaaatcttttgagatatatgcccaccctttcaaatcaaatttctcctttacttccg 18439  T
Q  417 aatcattgtaaaggattttagctaatgttgttttccctagccctcccatacctacaatggaaatcactcctat 489  Q
     ||| |||||||| | |||||| |  |||||||| || |  |||||||| || ||||||||||||||||||||    
T  18438 gatcgttgtaaagaagtttagcaagagttgttttacccaagcctcccattcccacaatggaaatcactcctat 18366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 33 - 208
Target Start/End: Complemental strand, 5988705 - 5988530
Alignment:
Q  33 caaatgcatgtctggcaagtaaagaccaacaatcttccttttccaaagatcttaaacggtggacagaaagaaaggtttgcattggtaatgcaactctttc 132  Q
    ||||||||||||| |||| ||||||||||||||||||  |||||| || ||| |||  ||||||||| |||||| ||||||| | |  ||||||||||||    
T  5988705 caaatgcatgtctagcaactaaagaccaacaatcttcactttccagaggtctcaaatagtggacagagagaaagatttgcatggatcttgcaactctttc 5988606  T
Q  133 atctcgtgttgtgatgatgatcttactccccatttccccaacattaaagatgtcattcagattattccaaccaaca 208  Q
    ||| | |||||||||||||||| |||| |||||||  ||| ||||||||| |||  |||||| | ||||| |||||    
T  5988605 atcccttgttgtgatgatgatcctacttcccattttaccagcattaaagacgtccatcagataaatccaatcaaca 5988530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 34 - 154
Target Start/End: Complemental strand, 18388208 - 18388082
Alignment:
Q  34 aaatgcatgtctggcaagtaaagaccaacaatcttccttttccaaagatcttaaacggtggacagaaagaaaggtttgcat------tggtaatgcaact 127  Q
    ||||||||||||||||| ||||||||| ||||||||  | |||| || ||| |||  |||||| ||| |||||||||||||      ||||  |||||||    
T  18388208 aaatgcatgtctggcaactaaagaccagcaatcttcactctccagaggtctcaaatagtggaccgaatgaaaggtttgcatggatggtggtggtgcaact 18388109  T
Q  128 ctttcatctcgtgttgtgatgatgatc 154  Q
    ||||| ||| ||| |||||||||||||    
T  18388108 ctttcgtcttgtgatgtgatgatgatc 18388082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 114
Target Start/End: Original strand, 4740 - 4832
Alignment:
Q  22 gttacttgctacaaatgcatgtctggcaagtaaagaccaacaatcttccttttccaaagatcttaaacggtggacagaaagaaaggtttgcat 114  Q
    ||||| |||| |||||||| |||  |||||||||||||| ||||||||  |||||| || | | ||   ||||||||||||||||||||||||    
T  4740 gttacatgctccaaatgcaagtccagcaagtaaagaccagcaatcttcactttccagaggtgtcaagtagtggacagaaagaaaggtttgcat 4832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 16447006 - 16446955
Alignment:
Q  18 ggtagttacttgctacaaatgcatgtctggcaagtaaagaccaacaatcttc 69  Q
    ||||||||| || | |||||||||||||||||| ||||||||| ||||||||    
T  16447006 ggtagttacatggtccaaatgcatgtctggcaattaaagaccagcaatcttc 16446955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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