View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2746_low_9 (Length: 413)
Name: NF2746_low_9
Description: NF2746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2746_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 3645795 - 3646190
Alignment:
| Q |
1 |
ctgacactttataaaatatatttacacgataagatacaagggtaaaaagtgttaccgaaactgtttgctgtgcggtaacctctgcttcttgatccttggt |
100 |
Q |
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| T |
3645795 |
ctgacactttataaaatatatttacacgataagatacaagggtaaaaagtgttaccgaaactgtttgctgtgcggtaacctctgcttcttgatccttggt |
3645894 |
T |
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| Q |
101 |
ggttcatgtaagatggcatcgtcgttaaagagcaatgcggaatcagaaggcaattgcaagtgcctcttcctccaagcggccacaaacaccaccgcaatct |
200 |
Q |
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| T |
3645895 |
ggttcatgtaagatggcatcgtcgttaaagagcaatgcggaatcagaaggcaattgcaagtgcctcttcctccaagcggccacaaacactaccgcaatct |
3645994 |
T |
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| Q |
201 |
gagtcaagggactacctaccggtttcttgtaccgatacttacaggttccaaacaaaaacacaacaagtgctagcacaatagaacaagcacatataccata |
300 |
Q |
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| T |
3645995 |
gagtcaagggactacctaccggtttcttgtaccgatacttacaggttccaaacaaaaacacaacaagtgctagcacaatagaacaagcacatataccata |
3646094 |
T |
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| Q |
301 |
accccaatctctaccctgatgatcttgtatgtaaacaaggaccgtcactgccataagagatcctagggttacgatgaagtaataccaattgagaaa |
396 |
Q |
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| T |
3646095 |
accccaatctctaccctgatgatcttgtatgtaaacaaggaccgtcaccgccataagagatcctaggtttacgatgaagtaataccaattgagaaa |
3646190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 52 - 216
Target Start/End: Original strand, 3658279 - 3658443
Alignment:
| Q |
52 |
ttaccgaaactgtttgctgtgcggtaacctctgcttcttgatccttggtggttcatgtaagatggcatcgtcgttaaagagcaatgcggaatcagaaggc |
151 |
Q |
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| T |
3658279 |
ttaccggaactgtttgctatgtggcatcctttgcttcttggtcttaggtgtttcacataggatatcatcctcttcatagagcaatgaagaatcagagggc |
3658378 |
T |
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| Q |
152 |
aattgcaagtgcctcttcctccaagcggccacaaacaccaccgcaatctgagtcaagggactacc |
216 |
Q |
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| T |
3658379 |
aattgcatgtgtctcttcctccaagcagccacaaacacgaccgcaatctgagtcaaaggactacc |
3658443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 40 - 157
Target Start/End: Original strand, 3641607 - 3641718
Alignment:
| Q |
40 |
gggtaaaaagtgttaccgaaactgtttgctgtgcggtaacctctgcttcttgatccttggtggttcatgtaagatggcatcgtcgttaaagagcaatgcg |
139 |
Q |
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| T |
3641607 |
gggtaaaaaatgttaccgaaactgcttgctgtgcagtaacttctgctttttgatccttagtggtttatcttaga------cgtcgttaaagagcaatgca |
3641700 |
T |
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| Q |
140 |
gaatcagaaggcaattgc |
157 |
Q |
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| T |
3641701 |
gaatcagagggcagttgc |
3641718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 351
Target Start/End: Original strand, 3658514 - 3658578
Alignment:
| Q |
287 |
gcacatataccataaccccaatctctaccctgatgatcttgtatgtaaacaaggaccgtcactgc |
351 |
Q |
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| T |
3658514 |
gcacaaataccgtaaccccaacctctaccttggttatcttgtatgtacacaagaacagtcactgc |
3658578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 163 - 339
Target Start/End: Complemental strand, 41873098 - 41872922
Alignment:
| Q |
163 |
cctcttcctccaagcggccacaaacaccaccgcaatctgagtcaagggactacctaccggtttcttgtaccgatacttacaggttccaaacaaaaacaca |
262 |
Q |
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| T |
41873098 |
cctcttcctccaagcagccacataaaccactgcaatctgagtcaaaggactaccagcaagtttcttaaaccgatacctctttgttccatataagaacaca |
41872999 |
T |
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| Q |
263 |
acaagtgctagcacaatagaacaagcacatataccataaccccaatctctaccctgatgatcttgtatgtaaacaag |
339 |
Q |
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| T |
41872998 |
caaagagcaacaacaatagcacaaacacacattccataaccccaatctcttccaacatgatcttgaatgtaaacaag |
41872922 |
T |
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