View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2747_high_1 (Length: 774)
Name: NF2747_high_1
Description: NF2747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2747_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 616; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 11 - 758
Target Start/End: Original strand, 3740403 - 3741151
Alignment:
| Q |
11 |
cagagagaataactctaagttgcttagttagtttgtacctgatgcagaaataaggagaacgacaagacaaatgaacatgaagacagtgtggaatttacta |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3740403 |
cagagagaataactctaagttgcttagttagtttgtacctgatgcagaaataaggagaacgacaagacaaatgaacatgaagacagtgtagaatttacta |
3740502 |
T |
|
| Q |
111 |
gtcgaggaaatcatgatttctaaatctaaatattggtctatnnnnnnn-tgttagcaacactatgtttgtgtctatatgtatatattagaactaatatag |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3740503 |
gtcgaggaaatcatgatttctaaatctaaatattggtctataaaaaaaatgttagcaacactatgtttgtgtctatatgtatatattagaactaatatag |
3740602 |
T |
|
| Q |
210 |
gtagacatgacaaaacaggttgaatatttttaaaatgatatgtcgatatggtctctctaagagccaactgcgaaaagtgtattgagctgaaaatcaannn |
309 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3740603 |
gtagacatgacaaaacaagttgaatatttttaaaatgatatgtcgatatagtctctctaagagccaactgtgaaaagtgtattgagctgaaaatcaattt |
3740702 |
T |
|
| Q |
310 |
nnnnatttatattatcaatttgttttaacctgtccatatagtctctttaggagccaac---atttgacaaagtttatggggctggaaatcaaacttttaa |
406 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3740703 |
ttttatttatattatcaatttgttttaatctgtccatatagtctctctaggagccaacaacatttgacaaagtttatggggctggaaatcaaacttttaa |
3740802 |
T |
|
| Q |
407 |
tttattattatcaatttcttttaatttgtacatatagtctatctaggaggtaaaacatgacaaaacttattgaacaagaaatcaaataatttgaaggtta |
506 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3740803 |
tttattattatcaatttcttttaatttgtacatatagtctatctaggaggtaaaccatgacaaaacttattgaacaagaaatcaaataatttgaaggtta |
3740902 |
T |
|
| Q |
507 |
tatgtaagggtgataatagaccagatcggcagttgtctgcgacctatcatacgacatgtctagcctagggaaactctatcattgtgacttcttcccacaa |
606 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3740903 |
tatgtaagggtgataatagaccaaatcgacagttgtttgcgacctatcatacgacatgtctagcctagggaaagtctatcattgtgacttcttcccacaa |
3741002 |
T |
|
| Q |
607 |
cctcaatatcaagggagtctgctcacaaaagttcattgtaataagaaagcaagaagtaaagaaacaaaactgt-ttgaaactgcaaataagacacaagag |
705 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3741003 |
cctcaatatcaagggagtctgctcacaaaagttcattgtaataaaaaagcaagaagtaaagaaacaaaactgtattgaaactgcaaataagacacaagag |
3741102 |
T |
|
| Q |
706 |
tttctatatatgtgtaatggatgatgagaaaagtttagattacaagcaaatat |
758 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3741103 |
tttc----tatgtgtaatggatgatgagaaaagtttagattacaagcaaatat |
3741151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 11 - 142
Target Start/End: Original strand, 3729290 - 3729420
Alignment:
| Q |
11 |
cagagagaataactctaagttgcttagttagtttgtacctgatgcagaaataaggagaacgacaagacaaatgaacatgaagacagtgtggaatttacta |
110 |
Q |
| |
|
||||| |||||| ||||||||||||| |||||||||||||||| ||||||||| |||||||| ||||| |||||||||||||||||| ||||||||| |
|
|
| T |
3729290 |
cagagtgaataagtctaagttgcttaaatagtttgtacctgatgtagaaataagaagaacgacgagacagatgaacatgaagacagtgcataatttacta |
3729389 |
T |
|
| Q |
111 |
gtcgaggaaatcatgatttctaaatctaaata |
142 |
Q |
| |
|
|| |||||||||||||||||| |||||||||| |
|
|
| T |
3729390 |
gttgaggaaatcatgatttct-aatctaaata |
3729420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 337 - 572
Target Start/End: Original strand, 3737264 - 3737503
Alignment:
| Q |
337 |
acctgtccatatagtctctttaggagccaacatttgacaaagtttatggggctggaaatcaaacttttaatttattattatcaatttcttttaatttgta |
436 |
Q |
| |
|
||||| ||||||||||||| |||||||||| || |||||| | |||| || || |||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3737264 |
acctgcccatatagtctctctaggagccaagatgtgacaacgcttattggtctaaaaatcaaaattttaatttattattatcaattt-ttttaatttgtg |
3737362 |
T |
|
| Q |
437 |
catatagtctatctaggaggtaaaacatgaca-aaacttattgaacaagaaatcaaataatttgaaggttatatgtaagggtgataatagaccag----a |
531 |
Q |
| |
|
| ||||| | | ||||| ||||| |||||| || ||||| ||||||||||||||| |||||||||| ||||||||||||| |||||||||| | |
|
|
| T |
3737363 |
ccaatagtttctttaggatctaaaagatgacagaagtttatttgacaagaaatcaaatagtttgaaggttgtatgtaagggtgagaatagaccagaccaa |
3737462 |
T |
|
| Q |
532 |
tcggcagttgtctgcgacctatcatacgacatgtctagcct |
572 |
Q |
| |
|
|| || |||||||| ||||||||||||||||||||||| |
|
|
| T |
3737463 |
ccgacatgagtctgcgatctatcatacgacatgtctagcct |
3737503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 343 - 529
Target Start/End: Original strand, 3729507 - 3729693
Alignment:
| Q |
343 |
ccatatagtctctttaggagccaacatttgacaaagtttatggggctggaaatcaaacttttaatttattattatcaatttcttttaatttgtacatata |
442 |
Q |
| |
|
|||||||||||||| || ||||||||| ||||| ||||||||| |||| |||||||| |||||||||| ||||| |||||| ||||||||||| |||||| |
|
|
| T |
3729507 |
ccatatagtctcttcagaagccaacatgtgacagagtttatggagctgaaaatcaaaattttaatttactattagcaatttgttttaatttgtccatata |
3729606 |
T |
|
| Q |
443 |
gtctatctaggaggtaaaacatgacaaaacttattgaacaagaaatcaaataatttgaaggttatatgtaagggtgataatagacca |
529 |
Q |
| |
|
| | ||||| | |||||||||||||| ||||||||| |||||||||||||| ||||| | | |||| ||||| ||||||||| |
|
|
| T |
3729607 |
ggttgtctagaaactaaaacatgacaaagtttattgaaccgtaaatcaaataatttaaaggtgacacgtaaaggtgagaatagacca |
3729693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 28 - 276
Target Start/End: Original strand, 3737047 - 3737293
Alignment:
| Q |
28 |
agttgcttagttagtttgtacctgatgcagaaataaggagaacgacaagacaaatgaacatgaagacagtgtggaatttactagtcgaggaaatcatgat |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| ||| || || |||| ||||||| ||| ||||| |||| || ||||||||||| |
|
|
| T |
3737047 |
agttgcttagttagtttgtacctgatgcagaaattaggagaacggaaaggcatataaacaagaagacaatgtataatttgctagcagaagaaatcatgat |
3737146 |
T |
|
| Q |
128 |
ttctaaatctaaatattggtctatnnnnnnntgttagcaacactatgtttgtgtctatatgtatatattagaactaatataggtagacatgacaaaacag |
227 |
Q |
| |
|
||||||||| ||||| || ||||| || | |||||| ||||||||||||||||||||||||| ||| | |||| ||||| |||||||||| |
|
|
| T |
3737147 |
ttctaaatccaaataatgttctataaagaagtg--accaacacaatgtttgtgtctatatgtatatattgaaaccagtataagtagatatgacaaaacta |
3737244 |
T |
|
| Q |
228 |
gttgaatatttttaaaatgatatgtcgatatggtctctctaagagccaa |
276 |
Q |
| |
|
||| || |||||| |||||| || | |||| ||||||||| ||||||| |
|
|
| T |
3737245 |
gtttaacatttttgaaatgacctgcccatatagtctctctaggagccaa |
3737293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 181 - 265
Target Start/End: Original strand, 3729435 - 3729519
Alignment:
| Q |
181 |
tctatatgtatatattagaactaatataggtagacatgacaaaacaggttgaatatttttaaaatgatatgtcgatatggtctct |
265 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||| ||| ||||| |||| | |||| |||||| |
|
|
| T |
3729435 |
tctatatgtatatattggaacttatataggtagacatgacaaaacaagttgaatatatttgaaatggtatgcccatatagtctct |
3729519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 322 - 429
Target Start/End: Original strand, 3755215 - 3755322
Alignment:
| Q |
322 |
tatcaatttgttttaacctgtccatatagtctctttaggagccaacatttgacaaagtttatggggctggaaatcaaacttttaatttattattatcaat |
421 |
Q |
| |
|
||||||| | |||||| |||||||||||||| |||||||||||| | ||||||||||||| |||| | ||||| || ||| ||||||||||||||||| |
|
|
| T |
3755215 |
tatcaatatattttaatttgtccatatagtctatttaggagccaagacatgacaaagtttattgggccgaaaatctaaatttcaatttattattatcaat |
3755314 |
T |
|
| Q |
422 |
ttctttta |
429 |
Q |
| |
|
|| ||||| |
|
|
| T |
3755315 |
ttgtttta |
3755322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 407 - 470
Target Start/End: Original strand, 3755207 - 3755270
Alignment:
| Q |
407 |
tttattattatcaatttcttttaatttgtacatatagtctatctaggaggtaaaacatgacaaa |
470 |
Q |
| |
|
||||||| ||||||| | ||||||||||| |||||||||||| |||||| || |||||||||| |
|
|
| T |
3755207 |
tttattactatcaatatattttaatttgtccatatagtctatttaggagccaagacatgacaaa |
3755270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 141
Target Start/End: Complemental strand, 38483029 - 38482946
Alignment:
| Q |
58 |
aaataaggagaacgacaagacaaatgaacatgaagacagtgtggaatttactagtcgaggaaatcatgatttctaaatctaaat |
141 |
Q |
| |
|
||||||||| || ||||||||| | |||||||||||| | || |||||||||| | | ||| ||||||||||||||| ||||| |
|
|
| T |
38483029 |
aaataaggaaaatgacaagacagaggaacatgaagacggggtagaatttactaataaaagaagtcatgatttctaaatgtaaat |
38482946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 581 - 645
Target Start/End: Original strand, 26269841 - 26269906
Alignment:
| Q |
581 |
tctatcattgtgacttcttc-ccacaacctcaatatcaagggagtctgctcacaaaagttcattgt |
645 |
Q |
| |
|
|||||||||||||||| || |||||| ||||| ||||||||||||| ||||||| | |||||||| |
|
|
| T |
26269841 |
tctatcattgtgacttattttccacaatctcaagatcaagggagtctactcacaagaattcattgt |
26269906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University