View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2747_high_11 (Length: 485)

Name: NF2747_high_11
Description: NF2747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2747_high_11
NF2747_high_11
[»] chr5 (2 HSPs)
chr5 (40-485)||(10357935-10358380)
chr5 (220-252)||(645344-645376)
[»] chr7 (4 HSPs)
chr7 (220-261)||(10893875-10893916)
chr7 (220-251)||(30737168-30737199)
chr7 (220-257)||(18750888-18750925)
chr7 (227-259)||(37610057-37610089)
[»] chr3 (1 HSPs)
chr3 (220-257)||(30367629-30367666)
[»] chr8 (2 HSPs)
chr8 (220-259)||(32691755-32691794)
chr8 (221-259)||(8917544-8917582)
[»] chr6 (1 HSPs)
chr6 (226-271)||(10031588-10031633)
[»] chr4 (3 HSPs)
chr4 (220-265)||(683064-683109)
chr4 (220-260)||(41989576-41989616)
chr4 (228-264)||(45267889-45267925)


Alignment Details
Target: chr5 (Bit Score: 418; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 40 - 485
Target Start/End: Original strand, 10357935 - 10358380
Alignment:
Q  40 aacctgtgacctccaaaaatcagacaacagcaactctagccatcacatcaagactccgatttcaaactatcattacatcacagaatgcatagtaaatatc 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  10357935 aacctgtgacctccaaaaatcagacaacagcaactctagccatcacatcaagactccgatttcaaactatcattacatcacagaatgcatactaaatatc 10358034  T
Q  140 tcacagcaatgtagcaacacattttctttcttttaaataaactttagcaatgacctatgaagcaccgacacaaccagtaaaatttaagaaaatgacataa 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10358035 tcacagcaatgtagcaacacattttctttcttttaaataaactttagcaatgacctatgaagcaccgacacaaccagtaaaatttaagaaaatgacataa 10358134  T
Q  240 ctgaatgtaatcaaatgtgttgtgtcagtgtcagacacgtgccgaatgccggacacacctccaatcagaagtgtcaagtgttatcgaggcaacgactaca 339  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  10358135 ctgaatgtaatcaaatgtgttgtgtcagtgtcagacacgtgccgaatgccggacacaccttcaatcagaagtgtcaagtgttattgaggcaacgactaca 10358234  T
Q  340 ttaactacattgtttcttaatgattctatactttccagacgcaacatcacaatgaaacagataaactcaatacaaattacaattcatttttaatttcaaa 439  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10358235 ttaactacattgtttcttaatgattctatactttccagacgcaacatcacaatgaaacagataagctcaatacaaattacaattcatttttaatttcaaa 10358334  T
Q  440 aatcacacgaaacaggacgcagcaacaatatcaaatcacaacattc 485  Q
    ||||| ||||||||||||||| ||||||||||||||||||| ||||    
T  10358335 aatcatacgaaacaggacgcaacaacaatatcaaatcacaagattc 10358380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 252
Target Start/End: Original strand, 645344 - 645376
Alignment:
Q  220 aatttaagaaaatgacataactgaatgtaatca 252  Q
    |||||||||||||||||||| ||||||||||||    
T  645344 aatttaagaaaatgacataattgaatgtaatca 645376  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 220 - 261
Target Start/End: Complemental strand, 10893916 - 10893875
Alignment:
Q  220 aatttaagaaaatgacataactgaatgtaatcaaatgtgttg 261  Q
    |||||||||||||||||||| |||||||||||| ||||||||    
T  10893916 aatttaagaaaatgacataattgaatgtaatcacatgtgttg 10893875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 251
Target Start/End: Complemental strand, 30737199 - 30737168
Alignment:
Q  220 aatttaagaaaatgacataactgaatgtaatc 251  Q
    ||||||||||||||||||||||||||||||||    
T  30737199 aatttaagaaaatgacataactgaatgtaatc 30737168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 257
Target Start/End: Original strand, 18750888 - 18750925
Alignment:
Q  220 aatttaagaaaatgacataactgaatgtaatcaaatgt 257  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  18750888 aatttaagaaaatgacataattgaatgtaatcacatgt 18750925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 227 - 259
Target Start/End: Complemental strand, 37610089 - 37610057
Alignment:
Q  227 gaaaatgacataactgaatgtaatcaaatgtgt 259  Q
    |||||||||||||||||||||||||| ||||||    
T  37610089 gaaaatgacataactgaatgtaatcacatgtgt 37610057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 220 - 257
Target Start/End: Complemental strand, 30367666 - 30367629
Alignment:
Q  220 aatttaagaaaatgacataactgaatgtaatcaaatgt 257  Q
    |||||||||||||||||||| |||||||||||||||||    
T  30367666 aatttaagaaaatgacataattgaatgtaatcaaatgt 30367629  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 259
Target Start/End: Original strand, 32691755 - 32691794
Alignment:
Q  220 aatttaagaaaatgacataactgaatgtaatcaaatgtgt 259  Q
    |||||||||||||||||||| |||||||||||| ||||||    
T  32691755 aatttaagaaaatgacataattgaatgtaatcacatgtgt 32691794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 221 - 259
Target Start/End: Complemental strand, 8917582 - 8917544
Alignment:
Q  221 atttaagaaaatgacataactgaatgtaatcaaatgtgt 259  Q
    ||||||||||||||||||| |||||||||||| ||||||    
T  8917582 atttaagaaaatgacataattgaatgtaatcagatgtgt 8917544  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 10031588 - 10031633
Alignment:
Q  226 agaaaatgacataactgaatgtaatcaaatgtgttgtgtcagtgtc 271  Q
    |||||||||||||| | |||||||||| | ||||||||||||||||    
T  10031588 agaaaatgacataattcaatgtaatcacaagtgttgtgtcagtgtc 10031633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 265
Target Start/End: Original strand, 683064 - 683109
Alignment:
Q  220 aatttaagaaaatgacataactgaatgtaatcaaatgtgttgtgtc 265  Q
    ||||| |||||||||||||| |||||||||||| |||||| |||||    
T  683064 aatttgagaaaatgacataattgaatgtaatcacatgtgtcgtgtc 683109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 260
Target Start/End: Original strand, 41989576 - 41989616
Alignment:
Q  220 aatttaagaaaatgacataactgaatgtaatcaaatgtgtt 260  Q
    |||||||||||||||||||| |||||||||| || ||||||    
T  41989576 aatttaagaaaatgacataattgaatgtaattaactgtgtt 41989616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 228 - 264
Target Start/End: Original strand, 45267889 - 45267925
Alignment:
Q  228 aaaatgacataactgaatgtaatcaaatgtgttgtgt 264  Q
    |||||||||||| |||||||||||| |||||||||||    
T  45267889 aaaatgacataattgaatgtaatcatatgtgttgtgt 45267925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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