View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2747_high_12 (Length: 462)

Name: NF2747_high_12
Description: NF2747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2747_high_12
NF2747_high_12
[»] chr1 (8 HSPs)
chr1 (82-443)||(27877811-27878172)
chr1 (388-443)||(10395304-10395359)
chr1 (388-443)||(12539226-12539281)
chr1 (388-443)||(40610037-40610092)
chr1 (388-443)||(3601164-3601219)
chr1 (388-433)||(9782430-9782475)
chr1 (388-435)||(2114474-2114521)
chr1 (390-435)||(32544292-32544337)
[»] chr8 (6 HSPs)
chr8 (390-442)||(26951388-26951440)
chr8 (392-439)||(21276375-21276422)
chr8 (390-439)||(18150955-18151004)
chr8 (388-436)||(11911332-11911380)
chr8 (396-434)||(34618975-34619013)
chr8 (399-443)||(33324815-33324859)
[»] chr7 (6 HSPs)
chr7 (390-443)||(17852454-17852507)
chr7 (390-443)||(12129601-12129654)
chr7 (399-439)||(34881082-34881122)
chr7 (388-443)||(9451570-9451625)
chr7 (399-436)||(31956950-31956987)
chr7 (388-436)||(36677734-36677782)
[»] chr6 (5 HSPs)
chr6 (390-443)||(11657744-11657797)
chr6 (388-441)||(32900015-32900068)
chr6 (388-443)||(29021912-29021967)
chr6 (406-443)||(27862053-27862090)
chr6 (396-443)||(13104324-13104370)
[»] scaffold0010 (1 HSPs)
scaffold0010 (390-442)||(255314-255366)
[»] chr3 (7 HSPs)
chr3 (390-442)||(26730819-26730871)
chr3 (390-443)||(1017574-1017627)
chr3 (399-443)||(4525394-4525438)
chr3 (390-442)||(47703683-47703735)
chr3 (390-435)||(7579623-7579668)
chr3 (388-436)||(10346430-10346478)
chr3 (408-443)||(20223261-20223296)
[»] chr2 (3 HSPs)
chr2 (390-442)||(41315813-41315865)
chr2 (401-442)||(10977868-10977909)
chr2 (393-442)||(28589903-28589952)
[»] chr5 (4 HSPs)
chr5 (392-442)||(30304932-30304982)
chr5 (389-443)||(24870540-24870594)
chr5 (390-443)||(24275352-24275405)
chr5 (390-443)||(24386808-24386861)
[»] chr4 (5 HSPs)
chr4 (390-443)||(16889251-16889304)
chr4 (391-443)||(35097018-35097071)
chr4 (390-429)||(32881904-32881943)
chr4 (399-442)||(37856927-37856970)
chr4 (399-442)||(46078569-46078612)
[»] scaffold0445 (1 HSPs)
scaffold0445 (390-435)||(12650-12695)
[»] scaffold0151 (1 HSPs)
scaffold0151 (399-443)||(21308-21352)


Alignment Details
Target: chr1 (Bit Score: 178; Significance: 8e-96; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 82 - 443
Target Start/End: Complemental strand, 27878172 - 27877811
Alignment:
Q  82 agtgaaatggcacatagttttttggtagtcatccttgacagcccttgtaaatttacaccttnnnnnnnnccttgtaattttagtattggacactatgtat 181  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||| |||||||||||    
T  27878172 agtgaaatggcacatagttttgtggtagtcatccttgacagcccttgtaaatttacaccttaaaaaaaaccttgtaattttagtattgtacactatgtat 27878073  T
Q  182 attttaaagttgtgtctaatagtatgatatattctctcgtgttcttaacaacatcaaacaaattcgtagtacatacaacaccttctctcaactatttttt 281  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  27878072 attttaaagttgtgtctaatagtatgatat--tctctcgtgttcttaacaacatcaaacaaattcatagtacatacaacaccttctctcaactatttttc 27877975  T
Q  282 aaatatgtataggagcgnnnnnnnactcttgaaa-nnnnnnngataaaaaattaattaaggactatgtttttatgaaacaactttaa-nnnnnnnnnnnn 379  Q
    |||||||||||||||||       ||||||||||        |||||||||| ||||||||||||||||||||||||||| ||| ||                 
T  27877974 aaatatgtataggagcgtttttttactcttgaaattttttttgataaaaaatgaattaaggactatgtttttatgaaacagcttcaattttgagtttttg 27877875  T
Q  380 nnnnnnncaaggaaggaaatcattgcatttcattagctaaaatatgccaaatacatgtaggtac 443  Q
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27877874 tttttttgaaggaaggaaatcattgcatttcattagctaaaatatgtcaaatacatgtaggtac 27877811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 388 - 443
Target Start/End: Original strand, 10395304 - 10395359
Alignment:
Q  388 aaggaaggaaatcattgcatttcattagctaaaatatgccaaatacatgtaggtac 443  Q
    ||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  10395304 aaggaagaaaatcattgtatttcattaactaaaatatgccaaatacatgtaggtac 10395359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 388 - 443
Target Start/End: Complemental strand, 12539281 - 12539226
Alignment:
Q  388 aaggaaggaaatcattgcatttcattagctaaaatatgccaaatacatgtaggtac 443  Q
    ||||||| || ||||||||||||||||||||||||||| |||||| ||||||||||    
T  12539281 aaggaagaaattcattgcatttcattagctaaaatatgtcaaataaatgtaggtac 12539226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 388 - 443
Target Start/End: Complemental strand, 40610092 - 40610037
Alignment:
Q  388 aaggaaggaaatcattgcatttcattagctaaaatatgccaaatacatgtaggtac 443  Q
    ||||||| |||||||| ||||||||||||||||||||| |||||||||||| ||||    
T  40610092 aaggaagaaaatcattacatttcattagctaaaatatgtcaaatacatgtatgtac 40610037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 388 - 443
Target Start/End: Original strand, 3601164 - 3601219
Alignment:
Q  388 aaggaaggaaatcattgcatttcattagctaaaatatgccaaatacatgtaggtac 443  Q
    ||||||| || |||||||||| |||||||||||||||| |||||||||| ||||||    
T  3601164 aaggaagaaattcattgcattccattagctaaaatatgtcaaatacatgaaggtac 3601219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 388 - 433
Target Start/End: Original strand, 9782430 - 9782475
Alignment:
Q  388 aaggaaggaaatcattgcatttcattagctaaaatatgccaaatac 433  Q
    ||||||| ||||| ||| ||||||||||||||||||||||||||||    
T  9782430 aaggaagcaaatcgttggatttcattagctaaaatatgccaaatac 9782475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 435
Target Start/End: Complemental strand, 2114521 - 2114474
Alignment:
Q  388 aaggaaggaaatcattgcatttcattagctaaaatatgccaaatacat 435  Q
    ||||||| || ||||||||||||||||| |||||| ||||||||||||    
T  2114521 aaggaagaaattcattgcatttcattagttaaaatgtgccaaatacat 2114474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 435
Target Start/End: Original strand, 32544292 - 32544337
Alignment:
Q  390 ggaaggaaatcattgcatttcattagctaaaatatgccaaatacat 435  Q
    ||||| || ||||||||||||||||| |||||| ||||||||||||    
T  32544292 ggaagaaattcattgcatttcattagttaaaatgtgccaaatacat 32544337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 7e-19; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 390 - 442
Target Start/End: Original strand, 26951388 - 26951440
Alignment:
Q  390 ggaaggaaatcattgcatttcattagctaaaatatgccaaatacatgtaggta 442  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  26951388 ggaaggaaatcattgcatttcattagataaaatatgccaaatacatgtaggta 26951440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 392 - 439
Target Start/End: Original strand, 21276375 - 21276422
Alignment:
Q  392 aaggaaatcattgcatttcattagctaaaatatgccaaatacatgtag 439  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  21276375 aaggaaatcattgcatttcattagctaaaatatgccaaatacgtgtag 21276422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 390 - 439
Target Start/End: Original strand, 18150955 - 18151004
Alignment:
Q  390 ggaaggaaatcattgcatttcattagctaaaatatgccaaatacatgtag 439  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  18150955 ggaaggaaatcattgcatttcattagataaaatatgctaaatacatgtag 18151004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 436
Target Start/End: Original strand, 11911332 - 11911380
Alignment:
Q  388 aaggaaggaaatcattgcatttcattagctaaaatatgccaaatacatg 436  Q
    ||||||| || |||||||||||||||||||||||| | |||||||||||    
T  11911332 aaggaagaaattcattgcatttcattagctaaaatgtaccaaatacatg 11911380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 396 - 434
Target Start/End: Original strand, 34618975 - 34619013
Alignment:
Q  396 aaatcattgcatttcattagctaaaatatgccaaataca 434  Q
    ||||||||||||||||||| |||||||||| ||||||||    
T  34618975 aaatcattgcatttcattaactaaaatatgtcaaataca 34619013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 399 - 443
Target Start/End: Complemental strand, 33324859 - 33324815
Alignment:
Q  399 tcattgcatttcattagctaaaatatgccaaatacatgtaggtac 443  Q
    ||||||||||| |||| |||||||||| ||||||||| |||||||    
T  33324859 tcattgcattttattaactaaaatatgtcaaatacatataggtac 33324815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 390 - 443
Target Start/End: Complemental strand, 17852507 - 17852454
Alignment:
Q  390 ggaaggaaatcattgcatttcattagctaaaatatgccaaatacatgtaggtac 443  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||||||||||    
T  17852507 ggaagaaaatcattgcatttcattagataaaatatgccaaatacatgtaggtac 17852454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 390 - 443
Target Start/End: Complemental strand, 12129654 - 12129601
Alignment:
Q  390 ggaaggaaatcattgcatttcattagctaaaatatgccaaatacatgtaggtac 443  Q
    ||||| |||||||||||||||||||| ||||||||| |||||||||||||||||    
T  12129654 ggaagaaaatcattgcatttcattagataaaatatgtcaaatacatgtaggtac 12129601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 399 - 439
Target Start/End: Complemental strand, 34881122 - 34881082
Alignment:
Q  399 tcattgcatttcattagctaaaatatgccaaatacatgtag 439  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  34881122 tcattgcatttcattagcaaaaatatgccaaatacatgtag 34881082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 388 - 443
Target Start/End: Complemental strand, 9451625 - 9451570
Alignment:
Q  388 aaggaaggaaatcattgcatttcattagctaaaatatgccaaatacatgtaggtac 443  Q
    ||||||| || | ||||||||||||||| ||||||||| |||||||||||||||||    
T  9451625 aaggaagaaattaattgcatttcattaggtaaaatatgtcaaatacatgtaggtac 9451570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 436
Target Start/End: Original strand, 31956950 - 31956987
Alignment:
Q  399 tcattgcatttcattagctaaaatatgccaaatacatg 436  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  31956950 tcattgcatttcattagttaaaatgtgccaaatacatg 31956987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 388 - 436
Target Start/End: Complemental strand, 36677782 - 36677734
Alignment:
Q  388 aaggaaggaaatcattgcatttcattagctaaaatatgccaaatacatg 436  Q
    ||||||| || | |||||||||||||||||||||| || ||||||||||    
T  36677782 aaggaagaaatttattgcatttcattagctaaaatgtgtcaaatacatg 36677734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 390 - 443
Target Start/End: Complemental strand, 11657797 - 11657744
Alignment:
Q  390 ggaaggaaatcattgcatttcattagctaaaatatgccaaatacatgtaggtac 443  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  11657797 ggaagaaaatcattgcatttcattagctaaaatatgccaaatatatgtaggtac 11657744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 388 - 441
Target Start/End: Complemental strand, 32900068 - 32900015
Alignment:
Q  388 aaggaaggaaatcattgcatttcattagctaaaatatgccaaatacatgtaggt 441  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  32900068 aaggaaggaaatcattgcatttcattagctaaaatatgtcaaatacatataggt 32900015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 388 - 443
Target Start/End: Complemental strand, 29021967 - 29021912
Alignment:
Q  388 aaggaaggaaatcattgcatttcattagctaaaatatgccaaatacatgtaggtac 443  Q
    ||||||| || ||||||||||| ||||||||||||||| |||||| ||||||||||    
T  29021967 aaggaagaaattcattgcatttaattagctaaaatatgtcaaatatatgtaggtac 29021912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 406 - 443
Target Start/End: Original strand, 27862053 - 27862090
Alignment:
Q  406 atttcattagctaaaatatgccaaatacatgtaggtac 443  Q
    |||||||||||||||||||| |||||||||||||||||    
T  27862053 atttcattagctaaaatatgtcaaatacatgtaggtac 27862090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 443
Target Start/End: Original strand, 13104324 - 13104370
Alignment:
Q  396 aaatcattgcatttcattagctaaaatatgccaaatacatgtaggtac 443  Q
    |||||||||||||||||||| | ||||||||||||||||| |||||||    
T  13104324 aaatcattgcatttcattag-ttaaatatgccaaatacatataggtac 13104370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 390 - 442
Target Start/End: Original strand, 255314 - 255366
Alignment:
Q  390 ggaaggaaatcattgcatttcattagctaaaatatgccaaatacatgtaggta 442  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  255314 ggaaggaaatcattgcatttcattagataaagtatgccaaatacatgtaggta 255366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 390 - 442
Target Start/End: Original strand, 26730819 - 26730871
Alignment:
Q  390 ggaaggaaatcattgcatttcattagctaaaatatgccaaatacatgtaggta 442  Q
    ||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  26730819 ggaagaaaatcattgcatttcattagataaaatatgccaaatacatgtaggta 26730871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 390 - 443
Target Start/End: Original strand, 1017574 - 1017627
Alignment:
Q  390 ggaaggaaatcattgcatttcattagctaaaatatgccaaatacatgtaggtac 443  Q
    ||||| |||| ||||||||||||||| |||||||||||||||||||||||||||    
T  1017574 ggaagaaaattattgcatttcattagataaaatatgccaaatacatgtaggtac 1017627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 399 - 443
Target Start/End: Original strand, 4525394 - 4525438
Alignment:
Q  399 tcattgcatttcattagctaaaatatgccaaatacatgtaggtac 443  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  4525394 tcattgcatttcattagctaaaatatgccaaatacatgtacgtac 4525438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 390 - 442
Target Start/End: Original strand, 47703683 - 47703735
Alignment:
Q  390 ggaaggaaatcattgcatttcattagctaaaatatgccaaatacatgtaggta 442  Q
    ||||||||| || ||||||||||||| ||||||||||||||||||||||||||    
T  47703683 ggaaggaaaacagtgcatttcattagataaaatatgccaaatacatgtaggta 47703735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 390 - 435
Target Start/End: Complemental strand, 7579668 - 7579623
Alignment:
Q  390 ggaaggaaatcattgcatttcattagctaaaatatgccaaatacat 435  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||    
T  7579668 ggaagaaaatcattgcatttcattagataaaatatgccaaatacat 7579623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 436
Target Start/End: Original strand, 10346430 - 10346478
Alignment:
Q  388 aaggaaggaaatcattgcatttcattagctaaaatatgccaaatacatg 436  Q
    ||||||| || |||||||||||||||||||||||| || ||||||||||    
T  10346430 aaggaagaaattcattgcatttcattagctaaaatgtgtcaaatacatg 10346478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 443
Target Start/End: Complemental strand, 20223296 - 20223261
Alignment:
Q  408 ttcattagctaaaatatgccaaatacatgtaggtac 443  Q
    ||||||| ||||||||||||||||||||||||||||    
T  20223296 ttcattaactaaaatatgccaaatacatgtaggtac 20223261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 390 - 442
Target Start/End: Original strand, 41315813 - 41315865
Alignment:
Q  390 ggaaggaaatcattgcatttcattagctaaaatatgccaaatacatgtaggta 442  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  41315813 ggaaggaaatcattgcatttcattagataaaatatgccaaatatatgtaggta 41315865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 401 - 442
Target Start/End: Complemental strand, 10977909 - 10977868
Alignment:
Q  401 attgcatttcattagctaaaatatgccaaatacatgtaggta 442  Q
    |||| |||||||||||||||||||| ||||||||||||||||    
T  10977909 attgtatttcattagctaaaatatgtcaaatacatgtaggta 10977868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 393 - 442
Target Start/End: Original strand, 28589903 - 28589952
Alignment:
Q  393 aggaaatcattgcatttcattagctaaaatatgccaaatacatgtaggta 442  Q
    ||||||| | ||||||||||||| ||||||||||||||||||| ||||||    
T  28589903 aggaaataagtgcatttcattagataaaatatgccaaatacatttaggta 28589952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 392 - 442
Target Start/End: Complemental strand, 30304982 - 30304932
Alignment:
Q  392 aaggaaatcattgcatttcattagctaaaatatgccaaatacatgtaggta 442  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  30304982 aaggaaatcattgcacttcattagataaaatatgccaaatacatgtaggta 30304932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 389 - 443
Target Start/End: Complemental strand, 24870594 - 24870540
Alignment:
Q  389 aggaaggaaatcattgcatttcattagctaaaatatgccaaatacatgtaggtac 443  Q
    |||||| |||||||||||||||||||||||||||||  |||||| ||||||||||    
T  24870594 aggaagaaaatcattgcatttcattagctaaaatatatcaaatatatgtaggtac 24870540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 390 - 443
Target Start/End: Complemental strand, 24275405 - 24275352
Alignment:
Q  390 ggaaggaaatcattgcatttcattagctaaaatatgccaaatacatgtaggtac 443  Q
    ||||| ||||||||| |||||||||| |||||||||||||||||||||| ||||    
T  24275405 ggaagaaaatcattgtatttcattagttaaaatatgccaaatacatgtaagtac 24275352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 390 - 443
Target Start/End: Original strand, 24386808 - 24386861
Alignment:
Q  390 ggaaggaaatcattgcatttcattagctaaaatatgccaaatacatgtaggtac 443  Q
    ||||| ||||||||| |||||||||| |||||||||||||||||||||| ||||    
T  24386808 ggaagaaaatcattgtatttcattagttaaaatatgccaaatacatgtaagtac 24386861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 390 - 443
Target Start/End: Complemental strand, 16889304 - 16889251
Alignment:
Q  390 ggaaggaaatcattgcatttcattagctaaaatatgccaaatacatgtaggtac 443  Q
    ||||| ||||||||||||||| |||| |||||||||||||||||||||||||||    
T  16889304 ggaagaaaatcattgcatttcgttagataaaatatgccaaatacatgtaggtac 16889251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 391 - 443
Target Start/End: Complemental strand, 35097071 - 35097018
Alignment:
Q  391 gaaggaaat-cattgcatttcattagctaaaatatgccaaatacatgtaggtac 443  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||    
T  35097071 gaaggaaattcattgcatttcattagctaaaatgtgccaaatacatgaaggtac 35097018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 429
Target Start/End: Complemental strand, 32881943 - 32881904
Alignment:
Q  390 ggaaggaaatcattgcatttcattagctaaaatatgccaa 429  Q
    ||||| |||||||||||||||||||| |||||||||||||    
T  32881943 ggaagaaaatcattgcatttcattagataaaatatgccaa 32881904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 442
Target Start/End: Original strand, 37856927 - 37856970
Alignment:
Q  399 tcattgcatttcattagctaaaatatgccaaatacatgtaggta 442  Q
    ||||||||||||||||| ||||||||  ||||||||||||||||    
T  37856927 tcattgcatttcattaggtaaaatatttcaaatacatgtaggta 37856970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 442
Target Start/End: Complemental strand, 46078612 - 46078569
Alignment:
Q  399 tcattgcatttcattagctaaaatatgccaaatacatgtaggta 442  Q
    |||||||||||||||||||||||| || |||||||||| |||||    
T  46078612 tcattgcatttcattagctaaaatgtgtcaaatacatgaaggta 46078569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 390 - 435
Target Start/End: Complemental strand, 12695 - 12650
Alignment:
Q  390 ggaaggaaatcattgcatttcattagctaaaatatgccaaatacat 435  Q
    ||||| |||||||||||||||||||| |||||||||||||||||||    
T  12695 ggaagaaaatcattgcatttcattagataaaatatgccaaatacat 12650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0151 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0151
Description:

Target: scaffold0151; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 399 - 443
Target Start/End: Original strand, 21308 - 21352
Alignment:
Q  399 tcattgcatttcattagctaaaatatgccaaatacatgtaggtac 443  Q
    |||||||||||||||||||||||| || ||||||||||| |||||    
T  21308 tcattgcatttcattagctaaaatgtgtcaaatacatgtgggtac 21352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University