View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2747_high_13 (Length: 431)
Name: NF2747_high_13
Description: NF2747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2747_high_13 |
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| [»] scaffold1519 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 11 - 245
Target Start/End: Original strand, 10844232 - 10844465
Alignment:
| Q |
11 |
cacagacacatattctcttctgtctattggagaaatagtctcaattcgagaacaactagatgttattcttgatggccttccgattgagtatgaat-cctg |
109 |
Q |
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| T |
10844232 |
cacagacacatattctcttatgtctattggagaaatagtctcaattcgagaacaactagatgttattcttgatggccttccgattgagtatgaatccctg |
10844331 |
T |
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| Q |
110 |
gttactctagtttctagcaaatctgagtaactagagtatgaatctccggttactcttaagttcaaaggcactctggatcttggtttggtcctgaaacccg |
209 |
Q |
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| T |
10844332 |
gttactctagtttctagcaaatctgagtaactagagtatgaatctctggttactct--agttcaaaggcactctggatcttggtttggtcctgaaatctg |
10844429 |
T |
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| Q |
210 |
cctctgcctttctccctcttaatttacaagccttgt |
245 |
Q |
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| T |
10844430 |
cctctgcctatctccctcttaatttacaagccttgt |
10844465 |
T |
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Target: scaffold1519 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: scaffold1519
Description:
Target: scaffold1519; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 241 - 414
Target Start/End: Complemental strand, 1551 - 1376
Alignment:
| Q |
241 |
cttgtgatggtgattgggcttat-atgcttacagc-gacattcaacctcaggcacttctttattccttggtccaaatctcatctcttggtgatctaagaa |
338 |
Q |
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| T |
1551 |
cttgtgatggtgattaggcttattatgcttacgactgacattcaacctcaggcacttctttattcctgggtccaaatctcatctcttggtgatctaagaa |
1452 |
T |
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| Q |
339 |
gaaaacacttgtggccaactcaagtgctgaagcaaagtacaggagtttagacatgccatttccatgtctacatact |
414 |
Q |
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| T |
1451 |
gaaaacacttgtggccaagtcaagttctgaagcaaagtacaagagtttagacatgccatttccatgtctacatact |
1376 |
T |
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