View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2747_high_22 (Length: 363)
Name: NF2747_high_22
Description: NF2747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2747_high_22 |
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Alignment Details
Target: chr6 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 4 - 206
Target Start/End: Complemental strand, 26298981 - 26298776
Alignment:
| Q |
4 |
ataagtgtaatttgcatttaattttattttagaaaaaagaagaatatatggnnnnnnn-taatagcataaaatttataaaagttgatattttttgcttat |
102 |
Q |
| |
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|||| ||||||||||||||||||| ||||||||||||| | |||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
26298981 |
ataaatgtaatttgcatttaatttaattttagaaaaaaaaggaatatatggaaaaaaaataatagcataaaagttataaaagttgatattttttgcttat |
26298882 |
T |
|
| Q |
103 |
attataggatcagaga--attttattattagaagttttttatgcaaagaataataactggagtactttttgttccgaaaagaataatgggtgactttaaa |
200 |
Q |
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|||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26298881 |
attataggatcagagagtatattattattagaagttttttatgcaaagaataataattggagtactttttgttccgaaaataataatgggtgactttaaa |
26298782 |
T |
|
| Q |
201 |
taacga |
206 |
Q |
| |
|
|||||| |
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|
| T |
26298781 |
taacga |
26298776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 268 - 363
Target Start/End: Complemental strand, 26298714 - 26298618
Alignment:
| Q |
268 |
gtttgaatacaagaagaataatgtcagtaattcacatttaccatgaatagc-nnnnnnnncttggtcgagtaccatgaactgcttgaactgagatct |
363 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||| |
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| T |
26298714 |
gtttgaatacaagaagaataatgtcaataattcacatttaccatgaacaactttttttttcttggtcgagtaccatgaactgcttgaactgagatct |
26298618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 9e-58; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 4 - 206
Target Start/End: Complemental strand, 45806330 - 45806125
Alignment:
| Q |
4 |
ataagtgtaatttgcatttaattttattttagaaaaaagaagaatatatggnnnnnnntaa-tagcataaaatttataaaagttgatattttttgcttat |
102 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||| |||| |||| || |||||||||| ||||||||||||||||||||||||| | |
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| T |
45806330 |
ataaatgtaatttgtatttaattttattttagaaaaaagaggaatttatgaaagaaaaaaaatagcataaaagttataaaagttgatattttttgcttgt |
45806231 |
T |
|
| Q |
103 |
attataggatcagaga--attttattattagaagttttttatgcaaagaataataactggagtactttttgttccgaaaagaataatgggtgactttaaa |
200 |
Q |
| |
|
||||||||||||| || |||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
45806230 |
attataggatcagggagtattttagtattagaagttttttatgcaaagaataataattggagtactttttgttccgaaaagaataattggtgagtttaaa |
45806131 |
T |
|
| Q |
201 |
taacga |
206 |
Q |
| |
|
|||||| |
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|
| T |
45806130 |
taacga |
45806125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 268 - 314
Target Start/End: Complemental strand, 45806063 - 45806017
Alignment:
| Q |
268 |
gtttgaatacaagaagaataatgtcagtaattcacatttaccatgaa |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45806063 |
gtttgaatacaagaagaataatgtcagtaattcacatttaccatgaa |
45806017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 41
Target Start/End: Original strand, 17236356 - 17236385
Alignment:
| Q |
12 |
aatttgcatttaattttattttagaaaaaa |
41 |
Q |
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|||||||||||||||||||||||||||||| |
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|
| T |
17236356 |
aatttgcatttaattttattttagaaaaaa |
17236385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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